Wall clock time and date at job start Mon Mar 30 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 N 1.31126 * 126.55273 * 239.99770 * 12 2 1 14 14 C 1.34500 * 105.61958 * 180.02562 * 13 12 2 15 15 C 1.50696 * 126.28929 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47472 * 89.99411 * 15 14 13 17 17 C 1.52998 * 109.47530 * 295.00016 * 16 15 14 18 18 C 1.52996 * 109.47530 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.46971 * 59.99733 * 18 17 16 20 20 C 1.52998 * 109.47441 * 299.99819 * 19 18 17 21 21 C 1.52999 * 109.46739 * 60.00472 * 20 19 18 22 22 N 1.29940 * 107.41992 * 359.97438 * 14 13 12 23 23 O 1.21304 * 110.25582 * 359.70962 * 22 14 13 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46877 * 209.99816 * 15 14 13 29 29 H 1.08998 * 109.47255 * 329.99387 * 15 14 13 30 30 H 1.09000 * 109.46801 * 55.00279 * 16 15 14 31 31 H 1.09000 * 109.46861 * 300.00280 * 17 16 15 32 32 H 1.08998 * 109.46793 * 59.99386 * 17 16 15 33 33 H 1.09000 * 109.46577 * 299.99761 * 18 17 16 34 34 H 1.08997 * 109.47280 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47081 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47448 * 60.00561 * 19 18 17 37 37 H 1.09000 * 109.47703 * 300.00311 * 20 19 18 38 38 H 1.09001 * 109.47248 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47129 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47630 * 59.99741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 6 2.0322 -0.7103 1.2305 13 7 2.7891 -0.2007 2.1723 14 6 2.9816 -1.1934 3.0590 15 6 3.7882 -1.1107 4.3293 16 6 2.8832 -0.6670 5.4802 17 6 2.3895 0.7578 5.2208 18 6 1.4850 1.2017 6.3721 19 6 2.2731 1.1658 7.6829 20 6 2.7667 -0.2590 7.9424 21 6 3.6713 -0.7029 6.7912 22 7 2.3435 -2.2366 2.6198 23 8 1.7864 -1.9784 1.5736 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7043 1.1577 -3.4845 28 1 4.2106 -2.0897 4.5558 29 1 4.5942 -0.3881 4.2015 30 1 2.0289 -1.3403 5.5510 31 1 3.2438 1.4310 5.1501 32 1 1.8285 0.7834 4.2867 33 1 0.6307 0.5285 6.4432 34 1 1.1337 2.2169 6.1875 35 1 1.6286 1.4817 8.5032 36 1 3.1275 1.8390 7.6118 37 1 1.9124 -0.9322 8.0136 38 1 3.3286 -0.2844 8.8761 39 1 4.0226 -1.7180 6.9758 40 1 4.5257 -0.0297 6.7199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596585478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:37 Heat of formation + Delta-G solvation = 22.147111 kcal Electronic energy + Delta-G solvation = -20126.119353 eV Core-core repulsion = 17135.406185 eV Total energy + Delta-G solvation = -2990.713168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.68788 -38.82830 -35.37010 -34.89641 -32.80377 -31.53356 -30.77037 -29.63782 -26.97994 -25.38362 -23.41400 -22.87298 -22.46815 -21.38631 -19.88284 -19.48980 -17.34092 -16.63161 -16.02765 -15.47968 -15.04718 -14.55106 -14.37645 -14.15877 -13.85733 -13.52346 -12.93077 -12.64952 -12.31099 -12.22598 -11.86641 -11.75101 -11.54436 -11.19530 -11.16704 -11.03889 -10.98827 -10.75266 -10.63570 -10.45101 -10.36734 -10.26422 -10.22938 -10.01924 -9.98886 -9.42353 -8.83291 -8.57068 -6.21861 -4.31055 2.04500 3.02771 3.24011 3.30562 3.35132 3.89498 4.21612 4.32899 4.57877 4.68455 4.73744 4.83343 5.09663 5.15190 5.21258 5.31071 5.42307 5.43916 5.47363 5.58706 5.67132 5.80991 5.85663 5.95709 6.03479 6.09348 6.11248 6.18453 6.26291 6.41015 6.48376 6.57541 6.61232 6.72384 6.86966 6.89052 7.39204 7.62675 7.80899 8.01218 8.68207 9.03753 9.35125 10.84266 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.004133 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.957696 B = 6773.261611 C = 7138.210872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.074 0.926 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.241 3.759 13 N -0.513 5.513 14 C 0.161 3.839 15 C -0.019 4.019 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.112 4.112 22 N -0.412 5.412 23 O 0.066 5.934 24 H 0.038 0.962 25 H 0.016 0.984 26 H 0.101 0.899 27 H 0.267 0.733 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -0.173 16.201 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.092 0.908 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.023 3.977 13 N -0.247 5.247 14 C -0.112 4.112 15 C -0.058 4.058 16 C -0.099 4.099 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.150 4.150 22 N -0.126 5.126 23 O 0.012 5.988 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.545 -0.497 16.671 16.871 hybrid contribution 0.271 -0.434 -1.043 1.162 sum 2.816 -0.931 15.627 15.906 Atomic orbital electron populations 1.21853 0.95633 1.00603 1.01572 1.17807 0.93792 0.95244 0.82686 0.90791 1.20879 1.32735 1.13315 0.89241 0.92001 1.24877 0.94563 0.94811 0.99049 1.69853 1.35598 1.22504 1.24217 0.86387 0.79429 0.79310 0.81767 1.20276 1.20919 1.19747 1.30149 0.89713 0.81024 0.96797 1.71963 1.19437 1.29554 1.03709 1.25614 1.00326 0.86014 0.99283 1.19921 0.96161 1.03027 0.86729 1.21123 0.97945 0.97697 0.93157 1.21590 0.99772 0.95359 0.98432 1.21536 0.98292 1.01168 0.94707 1.21541 0.99855 0.96863 0.97386 1.21516 0.99415 0.96840 0.97793 1.21565 0.98227 1.01304 0.93878 1.74508 1.14181 1.24388 0.99483 1.85245 1.54092 1.30847 1.28578 0.94237 0.96489 0.88072 0.92350 0.89812 0.89187 0.91121 0.91691 0.91244 0.92321 0.92037 0.92392 0.92014 0.92104 0.92161 0.91933 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.95 37.16 0.33 -2.82 16 2 C 0.13 3.06 2.77 -92.92 -0.26 2.80 16 3 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 4 C -0.52 -13.83 8.55 -34.44 -0.29 -14.13 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.83 5.31 -17.82 -0.09 1.74 16 7 N -0.88 -23.56 11.31 55.43 0.63 -22.94 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.24 5.55 6.96 -13.06 -0.09 5.46 16 13 N -0.51 -11.08 10.88 -9.87 -0.11 -11.18 16 14 C 0.16 3.10 6.66 -156.37 -1.04 2.05 16 15 C -0.02 -0.28 5.32 -27.89 -0.15 -0.43 16 16 C -0.08 -1.00 2.18 -90.62 -0.20 -1.19 16 17 C -0.11 -1.50 5.02 -26.73 -0.13 -1.64 16 18 C -0.12 -1.33 5.92 -26.74 -0.16 -1.49 16 19 C -0.12 -1.11 5.92 -26.74 -0.16 -1.26 16 20 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 21 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 22 N -0.41 -8.67 12.16 30.90 0.38 -8.29 16 23 O 0.07 1.50 11.31 18.09 0.20 1.71 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.10 2.47 6.06 -51.93 -0.31 2.16 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.13 6.84 -51.93 -0.36 0.77 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -27.12 322.27 -8.16 -35.27 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.55 Total: -1.50 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.54 Total: -13.36 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.90 Total: -42.41 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.12 -8.16 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.422 kcal (2) G-P(sol) polarization free energy of solvation -27.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds