Wall clock time and date at job start Mon Mar 30 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 N 1.31126 * 126.55273 * 239.99770 * 12 2 1 14 14 C 1.34500 * 105.61958 * 180.02562 * 13 12 2 15 15 C 1.50696 * 126.28929 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47472 * 89.99411 * 15 14 13 17 17 C 1.52998 * 109.47530 * 295.00016 * 16 15 14 18 18 C 1.52996 * 109.47530 * 180.02562 * 17 16 15 19 19 C 1.52993 * 109.46971 * 59.99733 * 18 17 16 20 20 C 1.52998 * 109.47441 * 299.99819 * 19 18 17 21 21 C 1.52999 * 109.46739 * 60.00472 * 20 19 18 22 22 N 1.29940 * 107.41992 * 359.97438 * 14 13 12 23 23 O 1.21304 * 110.25582 * 359.70962 * 22 14 13 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46877 * 209.99816 * 15 14 13 29 29 H 1.08998 * 109.47255 * 329.99387 * 15 14 13 30 30 H 1.09000 * 109.46801 * 55.00279 * 16 15 14 31 31 H 1.09000 * 109.46861 * 300.00280 * 17 16 15 32 32 H 1.08998 * 109.46793 * 59.99386 * 17 16 15 33 33 H 1.09000 * 109.46577 * 299.99761 * 18 17 16 34 34 H 1.08997 * 109.47280 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47081 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47448 * 60.00561 * 19 18 17 37 37 H 1.09000 * 109.47703 * 300.00311 * 20 19 18 38 38 H 1.09001 * 109.47248 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47129 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47630 * 59.99741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 6 2.0322 -0.7103 1.2305 13 7 2.7891 -0.2007 2.1723 14 6 2.9816 -1.1934 3.0590 15 6 3.7882 -1.1107 4.3293 16 6 2.8832 -0.6670 5.4802 17 6 2.3895 0.7578 5.2208 18 6 1.4850 1.2017 6.3721 19 6 2.2731 1.1658 7.6829 20 6 2.7667 -0.2590 7.9424 21 6 3.6713 -0.7029 6.7912 22 7 2.3435 -2.2366 2.6198 23 8 1.7864 -1.9784 1.5736 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7043 1.1577 -3.4845 28 1 4.2106 -2.0897 4.5558 29 1 4.5942 -0.3881 4.2015 30 1 2.0289 -1.3403 5.5510 31 1 3.2438 1.4310 5.1501 32 1 1.8285 0.7834 4.2867 33 1 0.6307 0.5285 6.4432 34 1 1.1337 2.2169 6.1875 35 1 1.6286 1.4817 8.5032 36 1 3.1275 1.8390 7.6118 37 1 1.9124 -0.9322 8.0136 38 1 3.3286 -0.2844 8.8761 39 1 4.0226 -1.7180 6.9758 40 1 4.5257 -0.0297 6.7199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596585478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:36 Heat of formation + Delta-G solvation = 7.988719 kcal Electronic energy + Delta-G solvation = -20126.733307 eV Core-core repulsion = 17135.406185 eV Total energy + Delta-G solvation = -2991.327122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.37296 -39.76573 -37.06373 -36.62872 -34.29721 -33.08409 -31.62450 -31.39278 -28.12966 -27.38405 -25.21395 -24.25393 -23.47974 -22.61645 -21.21706 -20.60986 -19.08924 -18.38800 -17.91468 -16.89686 -16.37644 -15.74099 -15.69104 -15.25304 -15.01544 -14.85514 -14.62036 -13.78461 -13.74176 -13.49021 -13.15300 -13.06457 -13.03349 -12.87210 -12.72026 -12.50239 -12.32892 -12.17798 -12.09291 -12.00404 -11.88603 -11.80623 -11.42406 -11.32797 -11.07090 -10.90652 -10.61077 -10.53325 -8.22506 -6.39223 0.30635 1.37311 1.44684 1.46652 1.56129 2.10444 2.39684 2.82404 3.07328 3.23366 3.70219 3.80008 3.85126 4.12300 4.27831 4.35031 4.44492 4.49461 4.53252 4.63694 4.66864 4.70099 4.78085 4.80992 4.89183 4.91021 5.01122 5.06092 5.10737 5.18488 5.25358 5.27097 5.30882 5.39231 5.40560 5.46655 5.58574 5.63899 5.82396 6.03672 6.62405 7.29998 7.31324 8.83209 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.004133 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.957696 B = 6773.261611 C = 7138.210872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.127 3.873 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.231 3.769 13 N -0.520 5.520 14 C 0.173 3.827 15 C -0.021 4.021 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.106 4.106 22 N -0.423 5.423 23 O 0.048 5.952 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -0.507 17.666 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.071 0.929 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.199 1.199 12 C 0.012 3.988 13 N -0.255 5.255 14 C -0.101 4.101 15 C -0.060 4.060 16 C -0.093 4.093 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.144 4.144 22 N -0.139 5.139 23 O -0.001 6.001 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.523 -0.834 18.124 18.482 hybrid contribution -0.027 -0.293 -1.438 1.468 sum 3.495 -1.127 16.686 17.086 Atomic orbital electron populations 1.21692 0.94639 1.00615 1.01556 1.17603 0.94608 0.94123 0.83015 0.92867 1.21042 1.33313 1.13433 0.90511 0.93105 1.25579 0.94562 0.95391 1.01462 1.69937 1.35899 1.23210 1.25077 0.85466 0.78752 0.78458 0.78496 1.19544 1.20076 1.19942 1.29851 0.90548 0.81465 0.96934 1.71983 1.19204 1.30320 1.03952 1.26490 0.99124 0.84630 0.99814 1.20271 0.96132 1.04733 0.84870 1.21086 0.97541 0.96579 0.94069 1.21557 0.99775 0.96214 0.97531 1.21524 0.98001 1.00881 0.95194 1.21530 0.99979 0.97459 0.96329 1.21531 0.99384 0.96289 0.98266 1.21548 0.98175 1.02527 0.92139 1.74498 1.15114 1.25018 0.99290 1.85224 1.54849 1.30621 1.29428 0.94112 0.94805 0.89635 0.91954 0.87781 0.87890 0.92549 0.91383 0.95004 0.92997 0.92047 0.91133 0.91411 0.92481 0.90144 0.90616 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.95 71.98 0.64 -5.25 16 2 C 0.13 6.39 2.77 -12.29 -0.03 6.35 16 3 H 0.05 2.86 8.14 -2.39 -0.02 2.84 16 4 C -0.54 -29.36 8.55 25.60 0.22 -29.14 16 5 H 0.05 2.79 7.74 -2.92 -0.02 2.76 16 6 C 0.03 1.65 5.31 84.66 0.45 2.10 16 7 N -0.90 -48.49 11.31 21.45 0.24 -48.24 16 8 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.23 10.85 6.96 88.38 0.61 11.47 16 13 N -0.52 -22.74 10.88 -303.19 -3.30 -26.03 16 14 C 0.17 6.59 6.66 138.46 0.92 7.52 16 15 C -0.02 -0.57 5.32 29.85 0.16 -0.41 16 16 C -0.07 -1.71 2.18 -10.79 -0.02 -1.74 16 17 C -0.11 -2.91 5.02 30.59 0.15 -2.76 16 18 C -0.12 -2.52 5.92 30.59 0.18 -2.34 16 19 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 20 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 21 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 22 N -0.42 -17.79 12.16 -60.30 -0.73 -18.53 16 23 O 0.05 2.22 11.31 74.79 0.85 3.07 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.09 4.26 6.06 -2.38 -0.01 4.25 16 27 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.04 6.84 -2.39 -0.02 1.03 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -58.20 322.27 3.90 -54.30 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.01 Total: 10.59 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.81 Total: -19.01 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -3.79 Total: -92.81 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -58.20 3.90 -54.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.291 kcal (2) G-P(sol) polarization free energy of solvation -58.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds