Wall clock time and date at job start Mon Mar 30 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47557 * 2 1 4 4 C 1.50703 * 109.46737 * 239.99686 * 2 1 3 5 5 H 1.08006 * 120.00155 * 240.00075 * 4 2 1 6 6 C 1.37879 * 120.00080 * 60.00733 * 4 2 1 7 7 N 1.31513 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47270 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47403 * 119.99695 * 8 6 4 11 11 H 1.48497 * 109.47250 * 239.99829 * 8 6 4 12 12 C 1.50702 * 109.46812 * 120.00115 * 2 1 3 13 13 N 1.31134 * 126.54989 * 239.99558 * 12 2 1 14 14 C 1.34490 * 105.61407 * 179.74243 * 13 12 2 15 15 C 1.50703 * 126.28691 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46947 * 359.97438 * 15 14 13 17 17 C 1.52996 * 109.46881 * 239.99456 * 15 14 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46966 * 60.00076 * 18 17 15 20 20 C 1.52996 * 109.47121 * 299.99944 * 19 18 17 21 21 H 1.09003 * 109.47112 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47474 * 300.00290 * 20 19 18 23 23 C 1.53000 * 109.47271 * 119.99513 * 15 14 13 24 24 N 1.29940 * 107.42691 * 359.97438 * 14 13 12 25 25 O 1.21299 * 110.25396 * 0.02562 * 24 14 13 26 26 H 1.09002 * 109.47312 * 300.00574 * 1 2 3 27 27 H 1.09007 * 109.47259 * 59.99766 * 1 2 3 28 28 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 29 29 H 0.97007 * 119.99627 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47605 * 299.99941 * 17 15 14 31 31 H 1.09001 * 109.47216 * 60.00304 * 17 15 14 32 32 H 1.08998 * 109.47194 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.46979 * 299.99970 * 18 17 15 34 34 H 1.08994 * 109.46733 * 60.00081 * 19 18 17 35 35 H 1.09003 * 109.46931 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47023 * 59.99857 * 22 20 19 37 37 H 1.08998 * 109.47081 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.46854 * 300.00108 * 22 20 19 39 39 H 1.09004 * 109.47062 * 299.99928 * 23 15 14 40 40 H 1.09001 * 109.46901 * 60.00252 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 3.1481 -2.2858 -3.6037 10 1 1.1676 -1.5867 -4.8165 11 1 3.1471 -0.1860 -4.8160 12 6 2.0322 -0.7105 1.2305 13 7 2.7892 -0.2008 2.1722 14 6 2.9765 -1.1917 3.0620 15 6 3.7819 -1.1086 4.3330 16 1 4.2022 -0.1078 4.4321 17 6 4.9156 -2.1351 4.2863 18 6 5.7337 -2.0504 5.5765 19 6 4.8287 -2.3443 6.7745 20 6 3.6950 -1.3178 6.8212 21 1 3.0505 -1.5270 7.6750 22 6 4.2845 0.0873 6.9599 23 6 2.8765 -1.4029 5.5308 24 7 2.3354 -2.2339 2.6245 25 8 1.7864 -1.9785 1.5735 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7082 1.1609 -3.4844 30 1 4.4957 -3.1360 4.1871 31 1 5.5606 -1.9254 3.4331 32 1 6.5416 -2.7813 5.5430 33 1 6.1537 -1.0494 5.6753 34 1 4.4087 -3.3452 6.6756 35 1 5.4115 -2.2835 7.6937 36 1 4.9293 0.2966 6.1063 37 1 3.4768 0.8184 6.9936 38 1 4.8674 0.1476 7.8790 39 1 2.0689 -0.6716 5.5640 40 1 2.4566 -2.4039 5.4315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596585504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:53 Heat of formation + Delta-G solvation = 27.088845 kcal Electronic energy + Delta-G solvation = -20261.275728 eV Core-core repulsion = 17270.776850 eV Total energy + Delta-G solvation = -2990.498879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.69000 -39.29020 -35.25269 -34.76264 -32.51143 -31.72363 -30.75079 -29.29164 -26.89285 -25.38246 -24.11771 -23.39712 -22.36059 -21.81886 -19.79284 -18.49394 -17.30166 -16.79764 -16.02561 -15.74968 -15.02135 -14.65292 -14.47812 -13.94953 -13.71645 -13.21070 -13.09003 -12.88874 -12.46218 -12.04581 -11.84294 -11.73236 -11.64480 -11.19367 -11.15039 -11.08784 -11.04038 -10.78990 -10.65747 -10.47412 -10.39985 -10.32793 -10.12892 -10.04944 -10.00991 -9.41017 -8.82417 -8.57528 -6.21956 -4.30948 2.04809 3.03246 3.22707 3.30949 3.36433 3.88502 4.14377 4.31534 4.53174 4.63415 4.82371 4.84624 5.10561 5.11799 5.23442 5.25002 5.33929 5.41484 5.45013 5.57350 5.65773 5.75427 5.86143 5.91472 6.02366 6.07249 6.12641 6.15817 6.19851 6.29379 6.45901 6.56920 6.60816 6.73107 6.87109 6.89278 7.39279 7.62717 7.80902 8.01066 8.68561 9.04033 9.35239 10.84342 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037232 B = 0.004247 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.870216 B = 6591.390996 C = 6892.154706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.124 3.876 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.242 3.758 13 N -0.517 5.517 14 C 0.161 3.839 15 C 0.010 3.990 16 H 0.098 0.902 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.089 4.089 21 H 0.071 0.929 22 C -0.153 4.153 23 C -0.105 4.105 24 N -0.408 5.408 25 O 0.067 5.933 26 H 0.016 0.984 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -3.119 15.445 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.104 3.896 3 H 0.092 0.908 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.024 3.976 13 N -0.250 5.250 14 C -0.112 4.112 15 C -0.009 4.009 16 H 0.116 0.884 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.107 4.107 21 H 0.089 0.911 22 C -0.211 4.211 23 C -0.144 4.144 24 N -0.121 5.121 25 O 0.013 5.987 26 H 0.035 0.965 27 H 0.119 0.881 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.440 -3.440 15.915 17.167 hybrid contribution 0.211 -0.360 -1.074 1.152 sum 5.651 -3.800 14.841 16.329 Atomic orbital electron populations 1.21851 0.95612 1.00618 1.01578 1.17819 0.93804 0.95267 0.82710 0.90780 1.20918 1.32800 1.13138 0.89206 0.91941 1.24878 0.94545 0.94842 0.99064 1.69864 1.35762 1.22431 1.24121 0.86333 0.78768 0.79651 0.82157 1.19590 1.20620 1.20723 1.30136 0.89667 0.81017 0.96822 1.71962 1.19516 1.29725 1.03830 1.25640 1.00081 0.86146 0.99320 1.19468 0.93429 1.01474 0.86577 0.88420 1.21568 0.96262 0.99158 0.97955 1.21559 0.97766 1.02086 0.94154 1.21586 0.96710 0.98944 0.98033 1.21094 0.96697 0.95644 0.97310 0.91066 1.21970 1.01119 0.96182 1.01783 1.21606 0.97450 1.02479 0.92826 1.74459 1.14178 1.24321 0.99092 1.85248 1.54443 1.30783 1.28254 0.96474 0.88077 0.94206 0.92404 0.91282 0.91694 0.91811 0.91428 0.91896 0.92000 0.91845 0.92639 0.92843 0.91733 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.12 3.07 2.77 -92.92 -0.26 2.81 16 3 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 4 C -0.52 -13.85 8.55 -34.44 -0.29 -14.14 16 5 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -23.63 11.32 55.43 0.63 -23.00 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.24 5.64 6.96 -13.06 -0.09 5.55 16 13 N -0.52 -11.52 11.55 -9.87 -0.11 -11.64 16 14 C 0.16 3.17 6.72 -156.38 -1.05 2.12 16 15 C 0.01 0.16 2.38 -91.77 -0.22 -0.06 16 16 H 0.10 1.41 6.43 -51.93 -0.33 1.07 16 17 C -0.11 -1.46 5.19 -26.73 -0.14 -1.59 16 18 C -0.12 -1.18 5.65 -26.73 -0.15 -1.33 16 19 C -0.12 -1.06 5.45 -26.73 -0.15 -1.21 16 20 C -0.09 -0.88 3.20 -90.59 -0.29 -1.17 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.15 -1.43 8.50 37.16 0.32 -1.11 16 23 C -0.11 -1.35 4.72 -26.70 -0.13 -1.47 16 24 N -0.41 -8.56 12.16 30.90 0.38 -8.19 16 25 O 0.07 1.52 11.31 18.10 0.20 1.73 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -27.35 317.15 -7.63 -34.98 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.27 Total: -1.40 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.21 Total: -12.72 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.89 Total: -42.82 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.35 -7.63 -34.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.071 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds