Wall clock time and date at job start Mon Mar 30 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47557 * 2 1 4 4 C 1.50703 * 109.46737 * 239.99686 * 2 1 3 5 5 H 1.08006 * 120.00155 * 240.00075 * 4 2 1 6 6 C 1.37879 * 120.00080 * 60.00733 * 4 2 1 7 7 N 1.31513 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47270 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47403 * 119.99695 * 8 6 4 11 11 H 1.48497 * 109.47250 * 239.99829 * 8 6 4 12 12 C 1.50702 * 109.46812 * 120.00115 * 2 1 3 13 13 N 1.31134 * 126.54989 * 239.99558 * 12 2 1 14 14 C 1.34490 * 105.61407 * 179.74243 * 13 12 2 15 15 C 1.50703 * 126.28691 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46947 * 359.97438 * 15 14 13 17 17 C 1.52996 * 109.46881 * 239.99456 * 15 14 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46966 * 60.00076 * 18 17 15 20 20 C 1.52996 * 109.47121 * 299.99944 * 19 18 17 21 21 H 1.09003 * 109.47112 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47474 * 300.00290 * 20 19 18 23 23 C 1.53000 * 109.47271 * 119.99513 * 15 14 13 24 24 N 1.29940 * 107.42691 * 359.97438 * 14 13 12 25 25 O 1.21299 * 110.25396 * 0.02562 * 24 14 13 26 26 H 1.09002 * 109.47312 * 300.00574 * 1 2 3 27 27 H 1.09007 * 109.47259 * 59.99766 * 1 2 3 28 28 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 29 29 H 0.97007 * 119.99627 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47605 * 299.99941 * 17 15 14 31 31 H 1.09001 * 109.47216 * 60.00304 * 17 15 14 32 32 H 1.08998 * 109.47194 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.46979 * 299.99970 * 18 17 15 34 34 H 1.08994 * 109.46733 * 60.00081 * 19 18 17 35 35 H 1.09003 * 109.46931 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47023 * 59.99857 * 22 20 19 37 37 H 1.08998 * 109.47081 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.46854 * 300.00108 * 22 20 19 39 39 H 1.09004 * 109.47062 * 299.99928 * 23 15 14 40 40 H 1.09001 * 109.46901 * 60.00252 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 3.1481 -2.2858 -3.6037 10 1 1.1676 -1.5867 -4.8165 11 1 3.1471 -0.1860 -4.8160 12 6 2.0322 -0.7105 1.2305 13 7 2.7892 -0.2008 2.1722 14 6 2.9765 -1.1917 3.0620 15 6 3.7819 -1.1086 4.3330 16 1 4.2022 -0.1078 4.4321 17 6 4.9156 -2.1351 4.2863 18 6 5.7337 -2.0504 5.5765 19 6 4.8287 -2.3443 6.7745 20 6 3.6950 -1.3178 6.8212 21 1 3.0505 -1.5270 7.6750 22 6 4.2845 0.0873 6.9599 23 6 2.8765 -1.4029 5.5308 24 7 2.3354 -2.2339 2.6245 25 8 1.7864 -1.9785 1.5735 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7082 1.1609 -3.4844 30 1 4.4957 -3.1360 4.1871 31 1 5.5606 -1.9254 3.4331 32 1 6.5416 -2.7813 5.5430 33 1 6.1537 -1.0494 5.6753 34 1 4.4087 -3.3452 6.6756 35 1 5.4115 -2.2835 7.6937 36 1 4.9293 0.2966 6.1063 37 1 3.4768 0.8184 6.9936 38 1 4.8674 0.1476 7.8790 39 1 2.0689 -0.6716 5.5640 40 1 2.4566 -2.4039 5.4315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596585504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:52 Heat of formation + Delta-G solvation = 12.234490 kcal Electronic energy + Delta-G solvation = -20261.919861 eV Core-core repulsion = 17270.776850 eV Total energy + Delta-G solvation = -2991.143012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.40781 -40.26142 -37.06128 -36.47953 -34.11994 -32.86426 -32.12632 -30.92461 -27.69294 -27.38892 -25.50159 -25.18707 -23.43590 -23.22283 -21.32964 -19.45159 -19.07762 -18.50155 -17.95014 -16.95468 -16.74591 -15.80082 -15.50356 -15.43588 -14.86222 -14.82365 -14.19933 -14.07560 -13.74679 -13.49883 -13.37508 -13.10198 -12.88388 -12.87399 -12.60997 -12.53593 -12.36952 -12.27364 -12.13894 -12.01929 -11.97996 -11.81910 -11.40832 -11.32099 -11.10348 -10.96959 -10.61782 -10.54568 -8.23202 -6.39806 0.28102 1.33858 1.43175 1.46224 1.57178 2.07542 2.39144 2.72344 3.06576 3.20432 3.69993 3.72516 3.82861 4.15772 4.20428 4.28570 4.37938 4.41521 4.43478 4.58005 4.68770 4.73936 4.79147 4.86646 4.90567 4.98325 5.02024 5.03893 5.06802 5.09597 5.17164 5.21156 5.32531 5.38200 5.40047 5.41729 5.61004 5.63407 5.81649 6.02783 6.61889 7.28461 7.29578 8.82882 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037232 B = 0.004247 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.870216 B = 6591.390996 C = 6892.154706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.126 3.874 3 H 0.054 0.946 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.233 3.767 13 N -0.530 5.530 14 C 0.171 3.829 15 C 0.009 3.991 16 H 0.104 0.896 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.083 4.083 21 H 0.086 0.914 22 C -0.153 4.153 23 C -0.101 4.101 24 N -0.414 5.414 25 O 0.050 5.950 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -3.563 16.828 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.072 0.928 4 C -0.582 4.582 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.201 1.201 12 C 0.014 3.986 13 N -0.264 5.264 14 C -0.103 4.103 15 C -0.011 4.011 16 H 0.122 0.878 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.102 4.102 21 H 0.104 0.896 22 C -0.210 4.210 23 C -0.139 4.139 24 N -0.129 5.129 25 O 0.001 5.999 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.430 -3.886 17.287 18.849 hybrid contribution -0.088 -0.196 -1.453 1.469 sum 6.343 -4.083 15.834 17.539 Atomic orbital electron populations 1.21695 0.94482 1.00712 1.01631 1.17638 0.94724 0.94137 0.82961 0.92837 1.21059 1.33428 1.13237 0.90471 0.93155 1.25575 0.94520 0.95426 1.01457 1.69945 1.36018 1.23110 1.25049 0.85407 0.78426 0.78474 0.78798 1.19896 1.19647 1.20056 1.29864 0.90357 0.81456 0.96909 1.71978 1.19497 1.30678 1.04267 1.26533 0.99002 0.84846 0.99903 1.19797 0.93796 1.02508 0.85029 0.87844 1.21559 0.95702 0.97777 0.99593 1.21552 0.97725 1.03177 0.92499 1.21596 0.96405 0.98464 0.98565 1.21093 0.96839 0.96458 0.95787 0.89592 1.21971 1.01079 0.95501 1.02484 1.21593 0.97301 1.01493 0.93545 1.74452 1.14926 1.24747 0.98798 1.85232 1.55123 1.30503 1.29089 0.94701 0.89595 0.94000 0.91935 0.92357 0.92985 0.90346 0.90533 0.92092 0.89636 0.92502 0.93069 0.90894 0.92651 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.95 71.98 0.64 -5.26 16 2 C 0.13 6.37 2.77 -12.29 -0.03 6.33 16 3 H 0.05 2.89 8.14 -2.39 -0.02 2.88 16 4 C -0.54 -29.39 8.55 25.60 0.22 -29.17 16 5 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 6 C 0.03 1.66 5.30 84.66 0.45 2.11 16 7 N -0.90 -48.48 11.32 21.45 0.24 -48.24 16 8 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.23 11.10 6.96 88.38 0.61 11.71 16 13 N -0.53 -23.96 11.55 -303.21 -3.50 -27.46 16 14 C 0.17 6.73 6.72 138.47 0.93 7.66 16 15 C 0.01 0.25 2.38 -11.54 -0.03 0.22 16 16 H 0.10 2.88 6.43 -2.39 -0.02 2.86 16 17 C -0.11 -2.72 5.19 30.59 0.16 -2.56 16 18 C -0.11 -1.94 5.65 30.59 0.17 -1.77 16 19 C -0.11 -1.72 5.45 30.59 0.17 -1.55 16 20 C -0.08 -1.43 3.20 -10.78 -0.03 -1.46 16 21 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 22 C -0.15 -2.43 8.50 71.98 0.61 -1.82 16 23 C -0.10 -2.46 4.72 30.61 0.14 -2.32 16 24 N -0.41 -17.57 12.16 -60.34 -0.73 -18.30 16 25 O 0.05 2.35 11.31 74.83 0.85 3.19 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.09 4.28 6.07 -2.38 -0.01 4.26 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.22 6.43 -2.39 -0.02 1.21 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.98 4.81 -2.39 -0.01 0.96 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -58.45 317.15 3.91 -54.54 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.02 Total: 10.22 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.02 Total: -17.87 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -3.99 Total: -94.00 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.19 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -58.45 3.91 -54.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.774 kcal (2) G-P(sol) polarization free energy of solvation -58.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds