Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99506 * 2 1 3 13 13 N 1.31131 * 126.55051 * 119.71464 * 12 2 1 14 14 C 1.34500 * 105.61466 * 179.97438 * 13 12 2 15 15 C 1.50697 * 126.28701 * 180.13020 * 14 13 12 16 16 H 1.08996 * 109.47320 * 0.23215 * 15 14 13 17 17 C 1.53007 * 109.46819 * 240.23670 * 15 14 13 18 18 C 1.52995 * 109.47017 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47426 * 59.99819 * 18 17 15 20 20 C 1.53000 * 109.47039 * 299.99862 * 19 18 17 21 21 H 1.09003 * 109.47194 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47131 * 300.00074 * 20 19 18 23 23 C 1.53001 * 109.47121 * 60.00048 * 20 19 18 24 24 N 1.29943 * 107.42425 * 0.34467 * 14 13 12 25 25 O 1.21304 * 110.25124 * 359.78617 * 24 14 13 26 26 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 27 27 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46980 * 300.00102 * 17 15 14 31 31 H 1.08997 * 109.47017 * 59.99695 * 17 15 14 32 32 H 1.09003 * 109.46797 * 179.97438 * 18 17 15 33 33 H 1.08996 * 109.47104 * 299.99534 * 18 17 15 34 34 H 1.08996 * 109.47211 * 59.99781 * 19 18 17 35 35 H 1.09000 * 109.47427 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47206 * 60.00232 * 22 20 19 37 37 H 1.08997 * 109.46855 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.46963 * 299.99700 * 22 20 19 39 39 H 1.08997 * 109.47395 * 179.97438 * 23 20 19 40 40 H 1.09004 * 109.47291 * 59.99765 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0078 10 1 1.8270 -0.4195 5.2204 11 1 1.8281 -2.5196 4.0084 12 6 2.0323 -0.7105 -1.2304 13 7 2.7849 -0.1994 -2.1748 14 6 2.9795 -1.1930 -3.0602 15 6 3.7855 -1.1102 -4.3307 16 1 4.2024 -0.1082 -4.4320 17 6 2.8818 -1.4099 -5.5284 18 6 3.7002 -1.3265 -6.8184 19 6 4.8367 -2.3496 -6.7684 20 6 5.7405 -2.0499 -5.5708 21 1 6.5499 -2.7791 -5.5349 22 6 6.3261 -0.6436 -5.7132 23 6 4.9221 -2.1333 -4.2808 24 7 2.3410 -2.2361 -2.6210 25 8 1.7901 -1.9799 -1.5711 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7082 1.1611 3.4843 30 1 2.4648 -2.4119 -5.4272 31 1 2.0719 -0.6813 -5.5638 32 1 3.0564 -1.5404 -7.6716 33 1 4.1174 -0.3247 -6.9198 34 1 4.4195 -3.3515 -6.6670 35 1 5.4195 -2.2905 -7.6876 36 1 5.5165 0.0853 -5.7487 37 1 6.9696 -0.4299 -4.8597 38 1 6.9092 -0.5842 -6.6322 39 1 5.5659 -1.9203 -3.4275 40 1 4.5048 -3.1352 -4.1794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596585506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = 27.153672 kcal Electronic energy + Delta-G solvation = -20265.924588 eV Core-core repulsion = 17275.428521 eV Total energy + Delta-G solvation = -2990.496068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.68842 -39.28960 -35.25123 -34.76085 -32.51042 -31.72752 -30.74660 -29.29075 -26.88510 -25.37849 -24.11746 -23.39498 -22.36335 -21.82080 -19.78648 -18.49729 -17.28751 -16.80852 -16.01603 -15.74785 -15.01919 -14.65190 -14.47880 -13.94290 -13.72805 -13.19903 -13.09335 -12.88692 -12.45418 -12.04545 -11.83066 -11.73625 -11.63673 -11.22566 -11.12154 -11.08393 -11.01057 -10.80049 -10.68756 -10.46070 -10.39879 -10.32410 -10.14660 -10.07071 -9.97252 -9.42460 -8.83099 -8.56437 -6.21404 -4.30688 2.04808 3.03220 3.26016 3.29936 3.34091 3.88521 4.14490 4.31678 4.53358 4.63567 4.82782 4.85029 5.10438 5.12183 5.23329 5.25056 5.33941 5.41901 5.45043 5.57938 5.65659 5.76795 5.86191 5.91594 6.02567 6.07413 6.12100 6.16226 6.20331 6.29943 6.45915 6.57049 6.60961 6.73276 6.87166 6.89342 7.39167 7.63002 7.80820 8.01345 8.68253 9.04042 9.35389 10.84795 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.004303 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.478867 B = 6505.602889 C = 6822.286718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.074 0.926 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.242 3.758 13 N -0.517 5.517 14 C 0.161 3.839 15 C 0.011 3.989 16 H 0.098 0.902 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.089 4.089 21 H 0.071 0.929 22 C -0.153 4.153 23 C -0.106 4.106 24 N -0.408 5.408 25 O 0.067 5.933 26 H 0.016 0.984 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -3.274 -15.141 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.092 0.908 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.024 3.976 13 N -0.250 5.250 14 C -0.112 4.112 15 C -0.009 4.009 16 H 0.116 0.884 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.107 4.107 21 H 0.090 0.910 22 C -0.210 4.210 23 C -0.144 4.144 24 N -0.121 5.121 25 O 0.013 5.987 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.887 -3.588 -15.608 17.063 hybrid contribution 0.244 -0.389 1.080 1.173 sum 6.131 -3.977 -14.528 16.263 Atomic orbital electron populations 1.21853 0.95628 1.00618 1.01575 1.17808 0.93788 0.95261 0.82674 0.90779 1.20837 1.33100 1.13040 0.89232 0.92048 1.24872 0.94509 0.94847 0.99031 1.69841 1.35612 1.22400 1.24339 0.86449 0.79314 0.79778 0.81368 1.20046 1.20961 1.19893 1.30136 0.89742 0.80969 0.96789 1.71965 1.19525 1.29680 1.03868 1.25642 1.00089 0.86083 0.99367 1.19468 0.93293 1.01536 0.86649 0.88419 1.21565 0.97610 1.02541 0.93152 1.21558 0.97059 0.99911 0.97033 1.21586 0.96709 0.99286 0.97693 1.21085 0.97337 0.97788 0.94529 0.91048 1.21968 1.00923 0.96714 1.01445 1.21601 0.96111 0.99103 0.97623 1.74463 1.14086 1.24339 0.99165 1.85249 1.54416 1.30730 1.28345 0.96468 0.94212 0.88081 0.92285 0.91293 0.91784 0.91833 0.91423 0.91907 0.92000 0.91880 0.92597 0.92847 0.91637 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.95 37.16 0.33 -2.84 16 2 C 0.13 3.09 2.77 -92.92 -0.26 2.83 16 3 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 4 C -0.52 -13.89 8.55 -34.44 -0.29 -14.18 16 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -23.64 11.32 55.43 0.63 -23.01 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.24 5.64 6.96 -13.05 -0.09 5.55 16 13 N -0.52 -11.53 11.55 -9.87 -0.11 -11.64 16 14 C 0.16 3.17 6.72 -156.37 -1.05 2.12 16 15 C 0.01 0.16 2.38 -91.77 -0.22 -0.06 16 16 H 0.10 1.41 6.43 -51.93 -0.33 1.07 16 17 C -0.11 -1.40 5.19 -26.73 -0.14 -1.54 16 18 C -0.12 -1.15 5.65 -26.73 -0.15 -1.30 16 19 C -0.12 -1.06 5.45 -26.73 -0.15 -1.21 16 20 C -0.09 -0.90 3.19 -90.62 -0.29 -1.19 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 C -0.15 -1.46 8.50 37.16 0.32 -1.14 16 23 C -0.11 -1.39 4.71 -26.73 -0.13 -1.52 16 24 N -0.41 -8.56 12.16 30.90 0.38 -8.19 16 25 O 0.07 1.52 11.31 18.10 0.20 1.72 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -27.30 317.15 -7.63 -34.93 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.27 Total: -1.31 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.21 Total: -12.74 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.89 Total: -42.84 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.72 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.30 -7.63 -34.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.084 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds