Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99506 * 2 1 3 13 13 N 1.31131 * 126.55051 * 119.71464 * 12 2 1 14 14 C 1.34500 * 105.61466 * 179.97438 * 13 12 2 15 15 C 1.50697 * 126.28701 * 180.13020 * 14 13 12 16 16 H 1.08996 * 109.47320 * 0.23215 * 15 14 13 17 17 C 1.53007 * 109.46819 * 240.23670 * 15 14 13 18 18 C 1.52995 * 109.47017 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47426 * 59.99819 * 18 17 15 20 20 C 1.53000 * 109.47039 * 299.99862 * 19 18 17 21 21 H 1.09003 * 109.47194 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47131 * 300.00074 * 20 19 18 23 23 C 1.53001 * 109.47121 * 60.00048 * 20 19 18 24 24 N 1.29943 * 107.42425 * 0.34467 * 14 13 12 25 25 O 1.21304 * 110.25124 * 359.78617 * 24 14 13 26 26 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 27 27 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46980 * 300.00102 * 17 15 14 31 31 H 1.08997 * 109.47017 * 59.99695 * 17 15 14 32 32 H 1.09003 * 109.46797 * 179.97438 * 18 17 15 33 33 H 1.08996 * 109.47104 * 299.99534 * 18 17 15 34 34 H 1.08996 * 109.47211 * 59.99781 * 19 18 17 35 35 H 1.09000 * 109.47427 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47206 * 60.00232 * 22 20 19 37 37 H 1.08997 * 109.46855 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.46963 * 299.99700 * 22 20 19 39 39 H 1.08997 * 109.47395 * 179.97438 * 23 20 19 40 40 H 1.09004 * 109.47291 * 59.99765 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0078 10 1 1.8270 -0.4195 5.2204 11 1 1.8281 -2.5196 4.0084 12 6 2.0323 -0.7105 -1.2304 13 7 2.7849 -0.1994 -2.1748 14 6 2.9795 -1.1930 -3.0602 15 6 3.7855 -1.1102 -4.3307 16 1 4.2024 -0.1082 -4.4320 17 6 2.8818 -1.4099 -5.5284 18 6 3.7002 -1.3265 -6.8184 19 6 4.8367 -2.3496 -6.7684 20 6 5.7405 -2.0499 -5.5708 21 1 6.5499 -2.7791 -5.5349 22 6 6.3261 -0.6436 -5.7132 23 6 4.9221 -2.1333 -4.2808 24 7 2.3410 -2.2361 -2.6210 25 8 1.7901 -1.9799 -1.5711 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7082 1.1611 3.4843 30 1 2.4648 -2.4119 -5.4272 31 1 2.0719 -0.6813 -5.5638 32 1 3.0564 -1.5404 -7.6716 33 1 4.1174 -0.3247 -6.9198 34 1 4.4195 -3.3515 -6.6670 35 1 5.4195 -2.2905 -7.6876 36 1 5.5165 0.0853 -5.7487 37 1 6.9696 -0.4299 -4.8597 38 1 6.9092 -0.5842 -6.6322 39 1 5.5659 -1.9203 -3.4275 40 1 4.5048 -3.1352 -4.1794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596585506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = 12.344035 kcal Electronic energy + Delta-G solvation = -20266.566783 eV Core-core repulsion = 17275.428521 eV Total energy + Delta-G solvation = -2991.138262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.40605 -40.26386 -37.05975 -36.47861 -34.11931 -32.86493 -32.12260 -30.92475 -27.70148 -27.38404 -25.50153 -25.18578 -23.42888 -23.22653 -21.32473 -19.46734 -19.06204 -18.50151 -17.94409 -16.95540 -16.74627 -15.80330 -15.49771 -15.44060 -14.85012 -14.83109 -14.22439 -14.05347 -13.73384 -13.50736 -13.37591 -13.07275 -12.89714 -12.86704 -12.61133 -12.57827 -12.35279 -12.25480 -12.15232 -11.99882 -11.97685 -11.83865 -11.40979 -11.32887 -11.08616 -10.99040 -10.61219 -10.54492 -8.22695 -6.39560 0.28129 1.33837 1.45658 1.46420 1.54728 2.07546 2.39276 2.72462 3.06953 3.20488 3.70104 3.72268 3.82897 4.15571 4.20250 4.28654 4.38290 4.41652 4.43420 4.58179 4.68998 4.73808 4.78624 4.86778 4.90961 4.97819 5.02139 5.04083 5.06585 5.09678 5.17270 5.21152 5.32440 5.38086 5.39871 5.41435 5.60952 5.63461 5.81722 6.02961 6.61659 7.28491 7.29680 8.82958 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.004303 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.478867 B = 6505.602889 C = 6822.286718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.126 3.874 3 H 0.054 0.946 4 C -0.545 4.545 5 H 0.050 0.950 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.270 1.270 12 C 0.233 3.767 13 N -0.530 5.530 14 C 0.171 3.829 15 C 0.009 3.991 16 H 0.104 0.896 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.083 4.083 21 H 0.084 0.916 22 C -0.153 4.153 23 C -0.102 4.102 24 N -0.414 5.414 25 O 0.050 5.950 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -3.719 -16.594 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.072 0.928 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.169 4.169 7 N -0.541 5.541 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.195 1.195 12 C 0.014 3.986 13 N -0.264 5.264 14 C -0.103 4.103 15 C -0.011 4.011 16 H 0.122 0.878 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.102 4.102 21 H 0.102 0.898 22 C -0.210 4.210 23 C -0.141 4.141 24 N -0.129 5.129 25 O 0.000 6.000 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.831 -4.037 -17.051 18.807 hybrid contribution -0.033 -0.229 1.483 1.501 sum 6.799 -4.266 -15.568 17.515 Atomic orbital electron populations 1.21696 0.94497 1.00700 1.01637 1.17629 0.94710 0.94132 0.82939 0.92846 1.21003 1.33722 1.13172 0.90483 0.93120 1.25570 0.94486 0.95433 1.01433 1.69927 1.35893 1.23095 1.25176 0.85533 0.78649 0.78852 0.78230 1.19993 1.19924 1.19503 1.29861 0.90431 0.81408 0.96876 1.71981 1.19509 1.30640 1.04298 1.26534 0.99010 0.84786 0.99946 1.19798 0.93639 1.02530 0.85165 0.87842 1.21554 0.97490 1.01602 0.93810 1.21554 0.97120 1.00762 0.95522 1.21595 0.96449 0.98892 0.98088 1.21081 0.97339 0.98698 0.93060 0.89814 1.21969 1.00873 0.95965 1.02211 1.21589 0.95565 0.97768 0.99176 1.74456 1.14834 1.24756 0.98877 1.85233 1.55096 1.30446 1.29180 0.94681 0.94026 0.89596 0.91917 0.92313 0.92515 0.90151 0.90501 0.92111 0.89628 0.92329 0.93313 0.90810 0.93122 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.95 71.98 0.64 -5.26 16 2 C 0.13 6.39 2.77 -12.29 -0.03 6.36 16 3 H 0.05 2.89 8.14 -2.39 -0.02 2.87 16 4 C -0.55 -29.48 8.55 25.60 0.22 -29.26 16 5 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 6 C 0.03 1.70 5.30 84.66 0.45 2.15 16 7 N -0.90 -48.53 11.32 21.45 0.24 -48.28 16 8 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 C 0.23 11.10 6.96 88.38 0.61 11.71 16 13 N -0.53 -23.95 11.55 -303.19 -3.50 -27.46 16 14 C 0.17 6.73 6.72 138.46 0.93 7.66 16 15 C 0.01 0.25 2.38 -11.54 -0.03 0.22 16 16 H 0.10 2.88 6.43 -2.39 -0.02 2.86 16 17 C -0.11 -2.56 5.19 30.60 0.16 -2.40 16 18 C -0.11 -1.86 5.65 30.59 0.17 -1.69 16 19 C -0.11 -1.71 5.45 30.59 0.17 -1.55 16 20 C -0.08 -1.48 3.19 -10.79 -0.03 -1.52 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 22 C -0.15 -2.52 8.50 71.98 0.61 -1.91 16 23 C -0.10 -2.61 4.71 30.60 0.14 -2.46 16 24 N -0.41 -17.56 12.16 -60.31 -0.73 -18.29 16 25 O 0.05 2.34 11.31 74.83 0.85 3.19 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 4.27 6.07 -2.39 -0.01 4.26 16 29 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.17 6.43 -2.39 -0.02 1.16 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.01 4.81 -2.39 -0.01 1.00 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -58.37 317.15 3.91 -54.46 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.02 Total: 10.47 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.02 Total: -17.95 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -3.99 Total: -94.03 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.85 Total: 3.19 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -58.37 3.91 -54.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.803 kcal (2) G-P(sol) polarization free energy of solvation -58.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds