Wall clock time and date at job start Mon Mar 30 2020 07:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50705 * 109.47074 * 120.00256 * 2 1 3 5 5 H 1.07995 * 119.99840 * 114.36018 * 4 2 1 6 6 C 1.37881 * 119.99568 * 294.35615 * 4 2 1 7 7 N 1.31514 * 119.99652 * 156.87606 * 6 4 2 8 8 Si 1.86805 * 120.00209 * 336.87146 * 6 4 2 9 9 H 1.48500 * 109.47020 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46772 * 60.00077 * 8 6 4 11 11 H 1.48497 * 109.47085 * 300.00578 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.31134 * 126.54959 * 119.71931 * 12 2 1 14 14 C 1.34498 * 105.61214 * 179.91538 * 13 12 2 15 15 C 1.50702 * 126.28186 * 180.12502 * 14 13 12 16 16 C 1.52998 * 109.47064 * 270.23430 * 15 14 13 17 17 C 1.53001 * 110.01755 * 59.29958 * 16 15 14 18 18 C 1.54272 * 110.03147 * 297.91135 * 16 15 14 19 19 C 1.54970 * 104.15921 * 217.13372 * 18 16 15 20 20 C 1.54894 * 102.77481 * 37.89217 * 19 18 16 21 21 C 1.53879 * 110.03487 * 180.69424 * 16 15 14 22 22 N 1.29940 * 107.42743 * 0.34270 * 14 13 12 23 23 O 1.21304 * 110.24987 * 359.78635 * 22 14 13 24 24 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 25 25 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 26 26 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 27 27 H 0.96999 * 120.00365 * 354.92438 * 7 6 4 28 28 H 1.08999 * 109.47590 * 30.23398 * 15 14 13 29 29 H 1.09002 * 109.46873 * 150.23826 * 15 14 13 30 30 H 1.09006 * 109.46698 * 60.70561 * 17 16 15 31 31 H 1.08999 * 109.47033 * 180.70173 * 17 16 15 32 32 H 1.08995 * 109.47198 * 300.70165 * 17 16 15 33 33 H 1.08994 * 110.48702 * 335.78116 * 18 16 15 34 34 H 1.09003 * 110.48834 * 98.42806 * 18 16 15 35 35 H 1.08999 * 110.72263 * 279.57426 * 19 18 16 36 36 H 1.08999 * 110.75980 * 156.22110 * 19 18 16 37 37 H 1.08998 * 110.48378 * 203.40641 * 20 19 18 38 38 H 1.08996 * 110.49045 * 80.75845 * 20 19 18 39 39 H 1.08994 * 110.03029 * 238.56992 * 21 16 15 40 40 H 1.09001 * 110.02807 * 359.95286 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4660 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0186 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7849 -0.1993 -2.1748 14 6 2.9804 -1.1932 -3.0596 15 6 3.7869 -1.1104 -4.3300 16 6 2.8816 -0.6662 -5.4807 17 6 2.2684 0.7001 -5.1672 18 6 1.7656 -1.7069 -5.7071 19 6 1.5839 -1.7392 -7.2458 20 6 3.0359 -1.5941 -7.7652 21 6 3.6888 -0.5940 -6.7888 22 7 2.3425 -2.2365 -2.6202 23 8 1.7910 -1.9801 -1.5706 24 1 -0.3634 -1.0204 -0.1221 25 1 -0.3634 0.4044 0.9448 26 1 -0.3634 0.6159 -0.8226 27 1 1.9066 -1.9123 3.4375 28 1 4.5930 -0.3880 -4.2023 29 1 4.2088 -2.0895 -4.5569 30 1 3.0634 1.4358 -5.0456 31 1 1.6160 1.0021 -5.9864 32 1 1.6891 0.6356 -4.2462 33 1 2.0756 -2.6849 -5.3391 34 1 0.8435 -1.3897 -5.2200 35 1 0.9689 -0.9033 -7.5792 36 1 1.1529 -2.6885 -7.5641 37 1 3.0401 -1.1948 -8.7794 38 1 3.5515 -2.5537 -7.7299 39 1 3.6430 0.4141 -7.2006 40 1 4.7257 -0.8747 -6.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:30 Heat of formation + Delta-G solvation = 32.411530 kcal Electronic energy + Delta-G solvation = -20450.602772 eV Core-core repulsion = 17460.334702 eV Total energy + Delta-G solvation = -2990.268070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.79769 -39.22454 -35.42032 -34.91944 -32.58031 -31.68029 -30.17867 -28.84853 -27.66303 -25.10402 -24.91290 -23.41840 -22.34628 -20.81640 -19.91849 -18.62381 -17.73121 -17.14755 -16.42972 -15.69047 -15.19400 -14.86376 -13.97031 -13.79408 -13.67548 -13.54728 -13.12802 -12.90323 -12.41183 -12.22795 -11.87597 -11.68255 -11.48352 -11.32129 -11.25570 -11.16637 -11.12808 -10.80354 -10.65206 -10.58904 -10.49651 -10.37754 -10.35028 -10.12042 -9.92866 -9.35325 -8.97876 -8.38213 -6.66893 -4.28778 1.94840 2.93062 3.30992 3.38495 3.51900 3.77318 4.13064 4.37162 4.47024 4.52626 4.59926 4.70503 5.04186 5.15739 5.25528 5.26588 5.32754 5.45219 5.53303 5.61671 5.69711 5.75074 5.79383 5.86723 5.91403 5.99077 6.09303 6.15750 6.19449 6.23414 6.27954 6.33149 6.39338 6.40172 6.60099 6.68463 6.85216 7.14634 7.68133 8.20445 8.66977 8.93193 9.37556 10.72069 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039967 B = 0.004521 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.403258 B = 6191.365840 C = 6351.290888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.615 4.615 5 H 0.063 0.937 6 C 0.048 3.952 7 N -0.884 5.884 8 Si 1.032 2.968 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.246 3.754 13 N -0.511 5.511 14 C 0.166 3.834 15 C -0.013 4.013 16 C -0.059 4.059 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.114 4.114 22 N -0.407 5.407 23 O 0.068 5.932 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.274 0.726 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 1.811 -18.952 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.653 4.653 5 H 0.081 0.919 6 C -0.160 4.160 7 N -0.515 5.515 8 Si 0.859 3.141 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.027 3.973 13 N -0.246 5.246 14 C -0.107 4.107 15 C -0.052 4.052 16 C -0.060 4.060 17 C -0.193 4.193 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.151 4.151 22 N -0.119 5.119 23 O 0.014 5.986 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.428 2.531 -18.417 18.595 hybrid contribution 0.337 -1.289 -0.862 1.587 sum 0.765 1.242 -19.279 19.334 Atomic orbital electron populations 1.22215 0.96212 1.01151 1.00949 1.17993 0.93236 0.95329 0.85291 0.91728 1.21694 1.42630 1.11123 0.89844 0.91914 1.25713 0.92838 1.05967 0.91507 1.70838 1.42180 1.06770 1.31726 0.84208 0.77647 0.75535 0.76758 1.20586 1.19830 1.20411 1.29525 0.90332 0.81207 0.96215 1.71952 1.19281 1.29660 1.03672 1.25549 1.00167 0.85895 0.99112 1.20062 0.95758 1.02965 0.86433 1.21157 0.95062 0.96233 0.93542 1.21896 1.00760 0.95253 1.01394 1.22500 0.98061 0.99022 0.95629 1.22495 0.96641 1.01337 0.95637 1.22346 0.96001 0.99316 0.98432 1.22246 0.99015 0.99780 0.94085 1.74530 1.14097 1.24282 0.99014 1.85249 1.54463 1.30431 1.28435 0.92764 0.91207 0.95002 0.91628 0.89180 0.89739 0.92331 0.92946 0.92218 0.91076 0.91995 0.91696 0.91781 0.91867 0.91701 0.91371 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.90 37.15 0.33 -2.70 16 2 C 0.10 2.38 2.37 -92.92 -0.22 2.16 16 3 H 0.07 1.47 6.72 -51.93 -0.35 1.13 16 4 C -0.62 -16.58 8.76 -34.44 -0.30 -16.89 16 5 H 0.06 1.86 7.99 -52.49 -0.42 1.44 16 6 C 0.05 1.30 5.19 -17.82 -0.09 1.21 16 7 N -0.88 -25.73 13.70 55.43 0.76 -24.97 16 8 Si 1.03 23.30 26.44 -169.99 -4.50 18.80 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -5.56 6.15 56.52 0.35 -5.22 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 C 0.25 5.51 6.96 -13.05 -0.09 5.41 16 13 N -0.51 -10.74 10.82 -9.87 -0.11 -10.84 16 14 C 0.17 3.11 5.88 -156.37 -0.92 2.19 16 15 C -0.01 -0.19 4.54 -27.88 -0.13 -0.31 16 16 C -0.06 -0.71 0.68 -153.39 -0.10 -0.82 16 17 C -0.14 -1.74 7.87 37.16 0.29 -1.45 16 18 C -0.11 -1.43 5.21 -25.03 -0.13 -1.56 16 19 C -0.12 -1.22 6.91 -24.69 -0.17 -1.39 16 20 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 21 C -0.11 -1.09 6.11 -25.61 -0.16 -1.24 16 22 N -0.41 -8.31 12.07 30.90 0.37 -7.94 16 23 O 0.07 1.52 11.31 18.11 0.20 1.73 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 1.45 5.48 -51.93 -0.28 1.17 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.93 6.66 -51.93 -0.35 0.58 16 33 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 34 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 40 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -28.54 318.90 -6.76 -35.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.44 Total: -0.23 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.86 Total: -16.66 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 1.03 Total: -43.75 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.50 Total: 18.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.54 -6.76 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.715 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds