Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50705 * 109.47074 * 120.00256 * 2 1 3 5 5 H 1.07995 * 119.99840 * 114.36018 * 4 2 1 6 6 C 1.37881 * 119.99568 * 294.35615 * 4 2 1 7 7 N 1.31514 * 119.99652 * 156.87606 * 6 4 2 8 8 Si 1.86805 * 120.00209 * 336.87146 * 6 4 2 9 9 H 1.48500 * 109.47020 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46772 * 60.00077 * 8 6 4 11 11 H 1.48497 * 109.47085 * 300.00578 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.31134 * 126.54959 * 119.71931 * 12 2 1 14 14 C 1.34498 * 105.61214 * 179.91538 * 13 12 2 15 15 C 1.50702 * 126.28186 * 180.12502 * 14 13 12 16 16 C 1.52998 * 109.47064 * 270.23430 * 15 14 13 17 17 C 1.53001 * 110.01755 * 59.29958 * 16 15 14 18 18 C 1.54272 * 110.03147 * 297.91135 * 16 15 14 19 19 C 1.54970 * 104.15921 * 217.13372 * 18 16 15 20 20 C 1.54894 * 102.77481 * 37.89217 * 19 18 16 21 21 C 1.53879 * 110.03487 * 180.69424 * 16 15 14 22 22 N 1.29940 * 107.42743 * 0.34270 * 14 13 12 23 23 O 1.21304 * 110.24987 * 359.78635 * 22 14 13 24 24 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 25 25 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 26 26 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 27 27 H 0.96999 * 120.00365 * 354.92438 * 7 6 4 28 28 H 1.08999 * 109.47590 * 30.23398 * 15 14 13 29 29 H 1.09002 * 109.46873 * 150.23826 * 15 14 13 30 30 H 1.09006 * 109.46698 * 60.70561 * 17 16 15 31 31 H 1.08999 * 109.47033 * 180.70173 * 17 16 15 32 32 H 1.08995 * 109.47198 * 300.70165 * 17 16 15 33 33 H 1.08994 * 110.48702 * 335.78116 * 18 16 15 34 34 H 1.09003 * 110.48834 * 98.42806 * 18 16 15 35 35 H 1.08999 * 110.72263 * 279.57426 * 19 18 16 36 36 H 1.08999 * 110.75980 * 156.22110 * 19 18 16 37 37 H 1.08998 * 110.48378 * 203.40641 * 20 19 18 38 38 H 1.08996 * 110.49045 * 80.75845 * 20 19 18 39 39 H 1.08994 * 110.03029 * 238.56992 * 21 16 15 40 40 H 1.09001 * 110.02807 * 359.95286 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4660 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0186 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7849 -0.1993 -2.1748 14 6 2.9804 -1.1932 -3.0596 15 6 3.7869 -1.1104 -4.3300 16 6 2.8816 -0.6662 -5.4807 17 6 2.2684 0.7001 -5.1672 18 6 1.7656 -1.7069 -5.7071 19 6 1.5839 -1.7392 -7.2458 20 6 3.0359 -1.5941 -7.7652 21 6 3.6888 -0.5940 -6.7888 22 7 2.3425 -2.2365 -2.6202 23 8 1.7910 -1.9801 -1.5706 24 1 -0.3634 -1.0204 -0.1221 25 1 -0.3634 0.4044 0.9448 26 1 -0.3634 0.6159 -0.8226 27 1 1.9066 -1.9123 3.4375 28 1 4.5930 -0.3880 -4.2023 29 1 4.2088 -2.0895 -4.5569 30 1 3.0634 1.4358 -5.0456 31 1 1.6160 1.0021 -5.9864 32 1 1.6891 0.6356 -4.2462 33 1 2.0756 -2.6849 -5.3391 34 1 0.8435 -1.3897 -5.2200 35 1 0.9689 -0.9033 -7.5792 36 1 1.1529 -2.6885 -7.5641 37 1 3.0401 -1.1948 -8.7794 38 1 3.5515 -2.5537 -7.7299 39 1 3.6430 0.4141 -7.2006 40 1 4.7257 -0.8747 -6.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 15.043956 kcal Electronic energy + Delta-G solvation = -20451.355886 eV Core-core repulsion = 17460.334702 eV Total energy + Delta-G solvation = -2991.021184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.43855 -40.16575 -37.14657 -36.57659 -34.26848 -33.06745 -31.79473 -29.67563 -28.85773 -26.98712 -25.96138 -25.17554 -23.92850 -21.70764 -21.45054 -19.84078 -19.55738 -18.83353 -18.05104 -16.73684 -16.59258 -16.08273 -15.43757 -15.18176 -14.95477 -14.63265 -14.47646 -14.32563 -14.08473 -13.53493 -13.41824 -13.18951 -13.03660 -12.65379 -12.54692 -12.42413 -12.06607 -12.01106 -11.97246 -11.85104 -11.72714 -11.65752 -11.60099 -11.44841 -11.33791 -11.22861 -10.70812 -10.47556 -8.86049 -6.48465 0.25471 1.33281 1.52576 1.59094 1.76576 2.05141 2.49137 2.73193 2.95196 3.17124 3.57583 3.61151 3.72495 4.09214 4.24003 4.33251 4.40467 4.44515 4.47044 4.53665 4.57329 4.62919 4.74567 4.77573 4.78070 4.90505 4.94955 4.96844 5.01166 5.04448 5.09953 5.12263 5.22701 5.29254 5.38027 5.42573 5.44481 5.49229 5.69676 5.94380 6.40665 7.25035 7.26971 8.52060 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039967 B = 0.004521 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.403258 B = 6191.365840 C = 6351.290888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 H 0.077 0.923 4 C -0.621 4.621 5 H 0.017 0.983 6 C 0.004 3.996 7 N -0.915 5.915 8 Si 1.071 2.929 9 H -0.284 1.284 10 H -0.232 1.232 11 H -0.263 1.263 12 C 0.231 3.769 13 N -0.514 5.514 14 C 0.179 3.821 15 C -0.017 4.017 16 C -0.055 4.055 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.108 4.108 22 N -0.418 5.418 23 O 0.043 5.957 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.257 0.743 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 3.799 -21.678 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 H 0.094 0.906 4 C -0.658 4.658 5 H 0.035 0.965 6 C -0.197 4.197 7 N -0.548 5.548 8 Si 0.890 3.110 9 H -0.210 1.210 10 H -0.156 1.156 11 H -0.188 1.188 12 C 0.012 3.988 13 N -0.249 5.249 14 C -0.094 4.094 15 C -0.056 4.056 16 C -0.057 4.057 17 C -0.190 4.190 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.146 4.146 22 N -0.135 5.135 23 O -0.006 6.006 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.544 4.495 -21.149 21.629 hybrid contribution 0.361 -2.007 -0.083 2.041 sum 0.905 2.489 -21.233 21.397 Atomic orbital electron populations 1.22112 0.94042 1.01555 1.02249 1.17942 0.94883 0.95253 0.83862 0.90571 1.21738 1.42227 1.09725 0.92139 0.96466 1.27182 0.91798 1.09777 0.90976 1.70967 1.44965 1.06040 1.32836 0.83756 0.79793 0.70179 0.77263 1.20985 1.15558 1.18833 1.29456 0.91141 0.81487 0.96682 1.71963 1.18821 1.30277 1.03800 1.26379 0.98875 0.84589 0.99572 1.20423 0.95916 1.04334 0.84888 1.21183 0.94874 0.95501 0.94115 1.21869 1.00846 0.95869 1.00400 1.22476 0.97160 0.98212 0.97640 1.22486 0.97880 1.01973 0.93333 1.22349 0.94751 0.99441 0.99122 1.22228 0.99099 1.00868 0.92377 1.74535 1.15081 1.25041 0.98793 1.85230 1.55387 1.30617 1.29400 0.93454 0.91126 0.91825 0.93368 0.87783 0.88416 0.91700 0.91344 0.95443 0.92641 0.94316 0.91051 0.91258 0.89977 0.91384 0.90091 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.90 71.98 0.64 -5.01 16 2 C 0.10 4.68 2.37 -12.29 -0.03 4.65 16 3 H 0.08 3.34 6.72 -2.39 -0.02 3.32 16 4 C -0.62 -34.39 8.76 25.60 0.22 -34.17 16 5 H 0.02 1.07 7.99 -2.91 -0.02 1.05 16 6 C 0.00 0.23 5.19 84.66 0.44 0.67 16 7 N -0.92 -54.96 13.70 21.45 0.29 -54.66 16 8 Si 1.07 45.69 26.44 68.60 1.81 47.50 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.23 -8.40 6.15 99.48 0.61 -7.79 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 C 0.23 10.46 6.96 88.38 0.61 11.08 16 13 N -0.51 -21.36 10.82 -303.21 -3.28 -24.64 16 14 C 0.18 6.63 5.88 138.46 0.81 7.45 16 15 C -0.02 -0.45 4.54 29.85 0.14 -0.31 16 16 C -0.06 -1.23 0.68 -51.45 -0.04 -1.26 16 17 C -0.13 -3.14 7.87 71.98 0.57 -2.57 16 18 C -0.12 -2.80 5.21 31.70 0.17 -2.64 16 19 C -0.12 -2.07 6.91 31.92 0.22 -1.85 16 20 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 21 C -0.11 -1.68 6.11 31.32 0.19 -1.48 16 22 N -0.42 -17.35 12.07 -60.32 -0.73 -18.08 16 23 O 0.04 1.96 11.31 74.85 0.85 2.80 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.79 5.48 -2.39 -0.01 2.78 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.26 15.81 8.73 -92.71 -0.81 15.00 16 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.10 2.34 8.13 -2.39 -0.02 2.32 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.03 0.81 6.66 -2.39 -0.02 0.80 16 33 H 0.05 1.48 7.84 -2.39 -0.02 1.47 16 34 H 0.04 1.08 7.84 -2.39 -0.02 1.06 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.09 7.67 -2.39 -0.02 1.07 16 40 H 0.08 1.06 7.67 -2.39 -0.02 1.05 16 Total: -1.00 -64.04 318.90 3.99 -60.05 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.88 Total: 13.94 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 4.17 Total: -26.91 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -3.71 Total: -97.39 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.85 Total: 2.80 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.81 Total: 47.50 kcal Total: -64.04 3.99 -60.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.091 kcal (2) G-P(sol) polarization free energy of solvation -64.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds