Wall clock time and date at job start Mon Mar 30 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 N 1.31127 * 126.55179 * 240.00158 * 12 2 1 14 14 C 1.34490 * 105.61400 * 180.02562 * 13 12 2 15 15 C 1.50700 * 126.28806 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47350 * 89.99804 * 15 14 13 17 17 C 1.53008 * 110.01422 * 59.29742 * 16 15 14 18 18 C 1.54269 * 110.03075 * 297.91111 * 16 15 14 19 19 C 1.54961 * 104.15836 * 217.13237 * 18 16 15 20 20 C 1.54893 * 102.77874 * 37.88869 * 19 18 16 21 21 C 1.53866 * 110.03463 * 180.69148 * 16 15 14 22 22 N 1.29946 * 107.42818 * 359.97438 * 14 13 12 23 23 O 1.21306 * 110.24707 * 359.70709 * 22 14 13 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47200 * 209.99818 * 15 14 13 29 29 H 1.08994 * 109.47286 * 329.99964 * 15 14 13 30 30 H 1.08997 * 109.47085 * 60.70748 * 17 16 15 31 31 H 1.09005 * 109.46585 * 180.70354 * 17 16 15 32 32 H 1.08993 * 109.47013 * 300.70217 * 17 16 15 33 33 H 1.09001 * 110.48224 * 335.78139 * 18 16 15 34 34 H 1.09004 * 110.48927 * 98.42283 * 18 16 15 35 35 H 1.08999 * 110.71905 * 279.57189 * 19 18 16 36 36 H 1.09005 * 110.76392 * 156.22108 * 19 18 16 37 37 H 1.08999 * 110.48557 * 203.40398 * 20 19 18 38 38 H 1.08998 * 110.48574 * 80.75506 * 20 19 18 39 39 H 1.09004 * 110.03485 * 238.56566 * 21 16 15 40 40 H 1.08998 * 110.03571 * 359.94761 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 7 2.7892 -0.2007 2.1722 14 6 2.9818 -1.1935 3.0587 15 6 3.7894 -1.1112 4.3284 16 6 2.8853 -0.6671 5.4801 17 6 1.7385 -1.6640 5.6599 18 6 2.3220 0.7409 5.1970 19 6 2.3043 1.4283 6.5856 20 6 3.6063 0.9066 7.2428 21 6 3.7012 -0.5621 6.7804 22 7 2.3437 -2.2368 2.6195 23 8 1.7865 -1.9785 1.5734 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7092 1.1618 -3.4843 28 1 4.2115 -2.0904 4.5547 29 1 4.5955 -0.3890 4.2001 30 1 2.1454 -2.6472 5.8961 31 1 1.0934 -1.3326 6.4738 32 1 1.1597 -1.7220 4.7382 33 1 2.9746 1.2820 4.5118 34 1 1.3127 0.6735 4.7909 35 1 1.4309 1.1174 7.1587 36 1 2.3326 2.5129 6.4803 37 1 3.5335 0.9607 8.3290 38 1 4.4666 1.4744 6.8883 39 1 3.2796 -1.2205 7.5400 40 1 4.7411 -0.8284 6.5913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:32 Heat of formation + Delta-G solvation = 31.896731 kcal Electronic energy + Delta-G solvation = -20424.557750 eV Core-core repulsion = 17434.267357 eV Total energy + Delta-G solvation = -2990.290393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.67627 -39.14467 -35.25101 -34.79586 -32.61764 -31.39523 -29.58084 -28.76069 -27.74355 -25.38143 -24.85065 -23.32405 -22.29299 -20.78887 -19.98033 -18.53011 -17.32761 -16.62657 -16.01812 -15.58018 -15.16075 -14.96106 -14.00022 -13.76332 -13.67977 -13.40862 -13.03723 -12.88932 -12.22664 -11.84929 -11.78284 -11.47606 -11.21560 -11.17258 -11.07762 -11.03098 -11.00259 -10.72366 -10.63828 -10.53610 -10.41222 -10.40888 -10.28834 -10.24599 -10.00786 -9.40578 -8.80644 -8.57329 -6.21781 -4.30743 2.06249 3.05140 3.22732 3.31031 3.36530 3.90978 4.21890 4.32080 4.54159 4.59361 4.71738 4.84194 5.11719 5.22461 5.30357 5.35282 5.40069 5.51756 5.63678 5.70969 5.77773 5.81901 5.83631 5.91779 6.06496 6.08909 6.12240 6.25698 6.31404 6.40852 6.46189 6.58192 6.62208 6.73550 6.87974 6.89751 7.39658 7.62964 7.81184 8.01481 8.68853 9.05724 9.35493 10.84477 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037051 B = 0.004439 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.524251 B = 6306.271655 C = 6525.676305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.241 3.759 13 N -0.513 5.513 14 C 0.164 3.836 15 C -0.013 4.013 16 C -0.059 4.059 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.113 4.113 22 N -0.410 5.410 23 O 0.065 5.935 24 H 0.016 0.984 25 H 0.100 0.900 26 H 0.038 0.962 27 H 0.266 0.734 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -0.529 15.593 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.105 3.895 3 H 0.092 0.908 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.247 5.247 14 C -0.109 4.109 15 C -0.052 4.052 16 C -0.060 4.060 17 C -0.195 4.195 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.151 4.151 22 N -0.124 5.124 23 O 0.011 5.989 24 H 0.035 0.965 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.795 -0.868 16.063 16.328 hybrid contribution 0.259 -0.453 -1.061 1.182 sum 3.054 -1.321 15.003 15.367 Atomic orbital electron populations 1.21845 0.95672 1.00573 1.01541 1.17798 0.93758 0.95251 0.82734 0.90818 1.20920 1.32764 1.13136 0.89231 0.91960 1.24876 0.94545 0.94841 0.99051 1.69862 1.35807 1.22405 1.24108 0.86342 0.78765 0.79663 0.82193 1.19595 1.20637 1.20726 1.30118 0.89772 0.81046 0.96796 1.71948 1.19443 1.29560 1.03701 1.25545 1.00249 0.86029 0.99100 1.20042 0.95711 1.02877 0.86526 1.21149 0.95197 0.96130 0.93550 1.21917 0.97609 0.98180 1.01746 1.22481 1.01458 0.94265 0.96778 1.22505 0.97466 0.99813 0.96414 1.22342 0.98173 0.95870 0.99677 1.22237 0.99859 0.96990 0.95991 1.74527 1.14136 1.24359 0.99355 1.85244 1.54133 1.30827 1.28653 0.96496 0.88127 0.94255 0.92416 0.89919 0.89194 0.92662 0.92738 0.92551 0.90405 0.91983 0.91894 0.91686 0.91992 0.91601 0.91576 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.95 37.16 0.33 -2.81 16 2 C 0.12 3.05 2.77 -92.92 -0.26 2.79 16 3 H 0.07 1.91 8.14 -51.93 -0.42 1.48 16 4 C -0.52 -13.78 8.55 -34.44 -0.29 -14.08 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.24 5.51 6.96 -13.06 -0.09 5.42 16 13 N -0.51 -11.02 11.49 -9.87 -0.11 -11.13 16 14 C 0.16 3.12 5.89 -156.38 -0.92 2.20 16 15 C -0.01 -0.18 4.54 -27.88 -0.13 -0.31 16 16 C -0.06 -0.74 0.68 -153.39 -0.10 -0.85 16 17 C -0.14 -1.79 7.87 37.16 0.29 -1.50 16 18 C -0.11 -1.50 5.24 -25.03 -0.13 -1.63 16 19 C -0.12 -1.32 6.91 -24.70 -0.17 -1.49 16 20 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 21 C -0.11 -1.12 6.11 -25.62 -0.16 -1.28 16 22 N -0.41 -8.48 11.41 30.90 0.35 -8.13 16 23 O 0.07 1.47 11.31 18.11 0.20 1.67 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.89 6.68 -51.93 -0.35 0.54 16 33 H 0.08 1.15 7.84 -51.93 -0.41 0.74 16 34 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 40 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -26.99 322.35 -7.45 -34.44 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.46 Total: -1.08 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.89 Total: -13.12 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.87 Total: -42.20 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.99 -7.45 -34.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.337 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds