Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 5 5 H 1.07989 * 120.00031 * 119.99780 * 4 2 1 6 6 C 1.37882 * 119.99790 * 300.00156 * 4 2 1 7 7 N 1.31513 * 119.99822 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00076 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00205 * 8 6 4 10 10 H 1.48503 * 109.47010 * 210.00270 * 8 6 4 11 11 H 1.48508 * 109.47162 * 330.00230 * 8 6 4 12 12 C 1.50696 * 109.46999 * 240.00243 * 2 1 3 13 13 O 1.21284 * 120.00109 * 239.99682 * 12 2 1 14 14 N 1.34777 * 120.00137 * 59.99467 * 12 2 1 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 2 16 16 C 1.47202 * 109.46914 * 60.00675 * 15 14 12 17 17 N 4.99253 * 87.65395 * 227.04241 * 2 1 3 18 18 C 1.52997 * 109.47289 * 300.00195 * 15 14 12 19 19 C 1.53000 * 109.47060 * 300.00274 * 18 15 14 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 15 21 21 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 22 22 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 23 23 C 1.53002 * 109.47143 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.46684 * 180.02562 * 15 14 12 25 25 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 26 26 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 28 28 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00047 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 18 15 14 31 31 H 1.09001 * 109.46832 * 60.00146 * 18 15 14 32 32 H 1.08992 * 109.47399 * 59.99823 * 19 18 15 33 33 H 1.09004 * 109.46724 * 180.02562 * 19 18 15 34 34 H 1.08993 * 109.47662 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 36 36 H 1.09002 * 109.47067 * 59.99982 * 23 21 20 37 37 H 1.09000 * 109.47312 * 180.02562 * 23 21 20 38 38 H 1.09004 * 109.46930 * 300.00065 * 23 21 20 39 39 H 1.09000 * 109.47486 * 300.00065 * 24 15 14 40 40 H 1.09002 * 109.46716 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6994 10 1 0.9773 1.9954 3.9071 11 1 0.8491 2.1773 1.4922 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.7053 -2.3282 -3.6510 17 7 1.3257 -3.3993 -3.6508 18 6 3.7254 -0.9396 -3.6506 19 6 4.2348 0.5032 -3.6504 20 6 3.7247 1.2244 -4.8996 21 6 2.1947 1.2237 -4.8998 22 1 1.8310 1.7373 -4.0098 23 6 1.6845 1.9444 -6.1493 24 6 1.6857 -0.2187 -4.8999 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9035 -0.5278 4.4375 29 1 1.1492 0.5389 -2.5435 30 1 4.0891 -1.4536 -4.5404 31 1 4.0888 -1.4534 -2.7606 32 1 3.8712 1.0167 -2.7604 33 1 5.3248 0.5036 -3.6507 34 1 4.0879 2.2520 -4.8997 35 1 4.0883 0.7107 -5.7896 36 1 2.0482 1.4304 -7.0391 37 1 0.5945 1.9443 -6.1492 38 1 2.0474 2.9722 -6.1496 39 1 0.5957 -0.2187 -4.9003 40 1 2.0490 -0.7325 -5.7899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597258332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = -48.982330 kcal Electronic energy + Delta-G solvation = -20932.539191 eV Core-core repulsion = 17938.741619 eV Total energy + Delta-G solvation = -2993.797572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75052 -39.33314 -37.33783 -35.80923 -35.06737 -33.52408 -32.87436 -30.98360 -27.29553 -27.11264 -25.22777 -24.25775 -22.61909 -21.43251 -20.27538 -19.04133 -18.70150 -17.95825 -16.83408 -16.53889 -15.99078 -15.72783 -15.31370 -15.00753 -14.88176 -14.61285 -14.47615 -14.14033 -13.87484 -13.66560 -13.45012 -13.33822 -13.28726 -13.13186 -12.78093 -12.67552 -12.49362 -12.19276 -12.12310 -11.80105 -11.46160 -11.37128 -11.24321 -11.21114 -11.01153 -10.75671 -10.39090 -10.21847 -8.25727 -6.33889 1.34843 1.39950 1.41387 1.52917 1.66087 1.81196 2.35888 2.46855 2.80156 3.08466 3.61747 3.72104 4.01097 4.14491 4.17540 4.28533 4.42913 4.44559 4.53040 4.59836 4.66639 4.77080 4.81438 4.92187 4.99301 5.03613 5.08707 5.15326 5.23826 5.35551 5.38900 5.42343 5.45571 5.52984 5.54304 5.58663 5.69711 6.25934 6.43158 6.66308 6.84650 7.27228 7.46484 8.92171 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.006157 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.837092 B = 4546.469761 C = 4932.707348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 H 0.080 0.920 4 C -0.520 4.520 5 H 0.026 0.974 6 C 0.003 3.997 7 N -0.956 5.956 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.301 1.301 11 H -0.220 1.220 12 C 0.530 3.470 13 O -0.568 6.568 14 N -0.708 5.708 15 C 0.279 3.721 16 C 0.223 3.777 17 N -0.476 5.476 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.088 4.088 22 H 0.081 0.919 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.266 0.734 29 H 0.423 0.577 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 13.400 -22.637 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.558 4.558 5 H 0.044 0.956 6 C -0.193 4.193 7 N -0.596 5.596 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.229 1.229 11 H -0.142 1.142 12 C 0.319 3.681 13 O -0.445 6.445 14 N -0.366 5.366 15 C 0.189 3.811 16 C -0.096 4.096 17 N -0.153 5.153 18 C -0.168 4.168 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.107 4.107 22 H 0.099 0.901 23 C -0.200 4.200 24 C -0.143 4.143 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.263 0.737 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.185 11.074 -22.385 25.070 hybrid contribution -0.175 0.133 1.282 1.300 sum -2.360 11.207 -21.103 24.011 Atomic orbital electron populations 1.22060 0.94792 1.01204 1.01945 1.19271 0.95076 0.97941 0.90529 0.90228 1.21099 1.31512 1.12717 0.90482 0.95552 1.26085 0.97512 1.00897 0.94806 1.70094 1.47765 1.42961 0.98752 0.85713 0.78402 0.79060 0.78420 1.19186 1.22927 1.14228 1.21128 0.78230 0.83540 0.85203 1.90598 1.38767 1.28078 1.87016 1.46077 1.54944 1.32445 1.03103 1.18012 0.95092 0.79335 0.88680 1.30237 0.92043 0.95713 0.91636 1.81111 1.10600 1.14004 1.09575 1.21958 0.91317 1.00262 1.03262 1.21453 1.00788 0.92971 0.99633 1.21631 0.94808 1.01173 0.97021 1.21147 0.95744 0.93288 1.00474 0.90089 1.21780 1.01409 1.00418 0.96348 1.21967 1.02502 0.96593 0.93265 0.88983 0.94504 0.93476 0.92519 0.73703 0.88964 0.93199 0.92569 0.91078 0.90241 0.90514 0.92015 0.91954 0.91725 0.88934 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.57 71.98 0.62 -4.65 16 2 C -0.01 -0.29 2.23 -12.29 -0.03 -0.31 16 3 H 0.08 3.10 7.20 -2.38 -0.02 3.08 16 4 C -0.52 -30.74 8.96 25.60 0.23 -30.51 16 5 H 0.03 1.86 7.00 -2.92 -0.02 1.84 16 6 C 0.00 0.18 5.45 84.66 0.46 0.64 16 7 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 8 Si 0.96 42.24 24.37 68.60 1.67 43.91 16 9 H -0.27 -11.12 6.87 99.48 0.68 -10.43 16 10 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.22 -7.99 6.53 99.48 0.65 -7.34 16 12 C 0.53 21.65 6.56 87.66 0.58 22.23 16 13 O -0.57 -29.27 12.67 -3.04 -0.04 -29.31 16 14 N -0.71 -19.17 3.91 -431.20 -1.69 -20.86 16 15 C 0.28 6.79 0.60 1.80 0.00 6.79 16 16 C 0.22 7.43 12.76 89.44 1.14 8.57 16 17 N -0.48 -18.81 18.54 20.01 0.37 -18.44 16 18 C -0.13 -3.20 4.48 30.59 0.14 -3.06 16 19 C -0.11 -2.12 5.77 30.60 0.18 -1.94 16 20 C -0.11 -1.26 5.20 30.59 0.16 -1.10 16 21 C -0.09 -0.89 2.55 -10.81 -0.03 -0.92 16 22 H 0.08 0.81 6.86 -2.39 -0.02 0.79 16 23 C -0.14 -0.98 9.19 71.98 0.66 -0.32 16 24 C -0.10 -1.42 4.01 30.58 0.12 -1.30 16 25 H 0.09 2.32 7.56 -2.39 -0.02 2.30 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.78 3.27 -2.39 -0.01 1.77 16 28 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 29 H 0.42 7.93 6.74 -92.71 -0.62 7.31 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.75 6.17 -2.39 -0.01 1.73 16 32 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -83.16 312.41 5.18 -77.98 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.34 Total: 14.01 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.23 Total: -5.88 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -1.02 Total: -100.72 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.91 kcal Total: -83.16 5.18 -77.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597258332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.001 kcal (2) G-P(sol) polarization free energy of solvation -83.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds