Wall clock time and date at job start Mon Mar 30 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46958 * 180.02562 * 15 14 12 17 17 C 1.47193 * 109.47147 * 59.99790 * 16 15 14 18 18 N 5.48409 * 100.76561 * 294.56674 * 2 1 3 19 19 C 1.53006 * 109.46886 * 299.99602 * 16 15 14 20 20 C 1.53002 * 109.46886 * 180.02562 * 19 16 15 21 21 C 1.52997 * 109.46978 * 60.00414 * 20 19 16 22 22 C 1.53006 * 109.47164 * 299.99874 * 21 20 19 23 23 C 1.52997 * 109.46978 * 180.02562 * 16 15 14 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47068 * 300.00006 * 15 14 12 30 30 H 1.09001 * 109.46919 * 59.99811 * 15 14 12 31 31 H 1.09001 * 109.47372 * 300.00594 * 19 16 15 32 32 H 1.09004 * 109.47107 * 60.00295 * 19 16 15 33 33 H 1.08992 * 109.47056 * 300.00350 * 20 19 16 34 34 H 1.09002 * 109.46838 * 179.97438 * 20 19 16 35 35 H 1.08996 * 109.47497 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.47375 * 59.99908 * 21 20 19 37 37 H 1.09001 * 109.47002 * 300.00262 * 22 21 20 38 38 H 1.09001 * 109.46801 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47045 * 299.99833 * 23 16 15 40 40 H 1.09001 * 109.47375 * 59.99908 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1948 -0.9406 -3.6508 16 6 1.6854 -0.2188 -4.9000 17 6 2.1770 1.1686 -4.8998 18 7 2.5544 2.2399 -4.8999 19 6 0.1553 -0.2179 -4.9001 20 6 -0.3541 0.5034 -6.1496 21 6 0.1555 -0.2187 -7.3986 22 6 1.6855 -0.2198 -7.3985 23 6 2.1944 -0.9407 -6.1493 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 1.1489 0.5386 -2.5435 29 1 3.2848 -0.9410 -3.6510 30 1 1.8311 -1.9682 -3.6507 31 1 -0.2087 -1.2453 -4.9002 32 1 -0.2078 0.2961 -4.0101 33 1 0.0099 1.5307 -6.1499 34 1 -1.4441 0.5037 -6.1499 35 1 -0.2078 0.2948 -8.2888 36 1 -0.2086 -1.2461 -7.3983 37 1 2.0496 0.8077 -7.3988 38 1 2.0485 -0.7338 -8.2885 39 1 3.2844 -0.9418 -6.1494 40 1 1.8300 -1.9680 -6.1492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598316542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:45 Heat of formation + Delta-G solvation = -61.862871 kcal Electronic energy + Delta-G solvation = -20237.589632 eV Core-core repulsion = 17243.233518 eV Total energy + Delta-G solvation = -2994.356114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23901 -39.97547 -36.86395 -35.86017 -35.67144 -33.00840 -31.95793 -31.63442 -27.26578 -26.90271 -24.43040 -23.83331 -23.34868 -21.51684 -21.02175 -18.42561 -18.01111 -17.58548 -16.83725 -16.48487 -16.08727 -15.78633 -15.54739 -15.20244 -14.81224 -14.65254 -14.33465 -14.25169 -14.02105 -13.65058 -13.30748 -13.07676 -12.97883 -12.93400 -12.67853 -12.64848 -12.57929 -12.56630 -12.17018 -12.02542 -12.00226 -11.41796 -11.14688 -11.02517 -11.01011 -10.59979 -10.30081 -9.98791 -8.14304 -6.24979 1.41699 1.42317 1.54351 1.69403 1.70079 1.94215 2.33084 2.51511 2.79289 3.15552 3.52791 3.67847 3.77914 4.15028 4.25574 4.26761 4.41060 4.49744 4.57234 4.65011 4.72342 4.76361 4.80749 4.93196 4.95761 5.03398 5.09828 5.15581 5.23886 5.25415 5.39345 5.40134 5.50257 5.54222 5.55710 5.75550 5.94939 6.21639 6.49789 6.68158 6.85571 7.40333 7.52691 8.91583 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037815 B = 0.004234 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.259860 B = 6611.998958 C = 6757.277124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.020 3.980 3 H 0.031 0.969 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.525 3.475 13 O -0.580 6.580 14 N -0.730 5.730 15 C 0.128 3.872 16 C 0.039 3.961 17 C 0.235 3.765 18 N -0.480 5.480 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.103 4.103 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.403 0.597 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 -3.860 -21.119 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.002 4.002 3 H 0.049 0.951 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.314 3.686 13 O -0.459 6.459 14 N -0.384 5.384 15 C 0.003 3.997 16 C 0.035 3.965 17 C -0.082 4.082 18 N -0.156 5.156 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.142 4.142 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.770 -2.816 -20.915 21.438 hybrid contribution 0.221 0.152 1.171 1.202 sum -3.550 -2.664 -19.744 20.237 Atomic orbital electron populations 1.21533 0.94760 0.99793 1.01490 1.18829 0.95671 0.95552 0.90104 0.95144 1.21303 1.31491 1.12747 0.91001 0.92981 1.25630 0.95202 0.95761 1.01564 1.69971 1.37339 1.23709 1.24242 0.85573 0.78205 0.78951 0.79037 1.20327 1.20010 1.19934 1.21379 0.78180 0.83668 0.85333 1.90513 1.39514 1.28390 1.87447 1.46088 1.54617 1.32516 1.05185 1.21523 0.99317 0.97271 0.81549 1.18877 0.98132 0.82002 0.97526 1.29485 0.92177 0.94988 0.91583 1.81218 1.10355 1.13954 1.10053 1.21763 0.89489 1.04510 0.99096 1.21597 1.01683 0.98232 0.94534 1.21565 0.94667 1.02086 0.97116 1.21583 0.96646 0.99675 0.98054 1.21671 1.01630 1.00856 0.90021 0.95050 0.91392 0.93219 0.92695 0.76145 0.92073 0.88010 0.86847 0.91687 0.94322 0.89844 0.91455 0.89369 0.94403 0.89287 0.90626 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.87 71.98 0.64 -4.66 16 2 C 0.02 0.99 2.64 -12.29 -0.03 0.96 16 3 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.53 -30.56 8.37 25.60 0.21 -30.35 16 5 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 6 C 0.02 0.98 5.30 84.65 0.45 1.42 16 7 N -0.91 -51.90 11.32 21.45 0.24 -51.65 16 8 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 12 C 0.53 23.49 7.15 87.66 0.63 24.11 16 13 O -0.58 -29.69 15.46 -3.05 -0.05 -29.73 16 14 N -0.73 -23.64 4.89 -463.04 -2.27 -25.90 16 15 C 0.13 3.10 4.54 86.38 0.39 3.49 16 16 C 0.04 0.69 0.49 -53.99 -0.03 0.66 16 17 C 0.24 5.91 10.60 89.44 0.95 6.86 16 18 N -0.48 -15.06 18.54 20.00 0.37 -14.69 16 19 C -0.11 -1.61 4.53 30.60 0.14 -1.47 16 20 C -0.12 -1.62 5.70 30.59 0.17 -1.45 16 21 C -0.12 -1.15 5.92 30.60 0.18 -0.97 16 22 C -0.12 -1.40 5.70 30.58 0.17 -1.22 16 23 C -0.10 -1.23 4.70 30.57 0.14 -1.09 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 26 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 27 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.40 11.87 6.29 -92.71 -0.58 11.29 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.11 6.86 -2.38 -0.02 1.09 16 33 H 0.04 0.68 7.23 -2.39 -0.02 0.66 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.04 0.61 7.23 -2.39 -0.02 0.59 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.47 321.46 4.80 -66.67 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.45 Total: 11.90 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.02 Total: -3.69 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -1.65 Total: -92.25 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.47 4.80 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598316542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.805 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds