Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 110.63988 * 2 1 4 4 N 2.60803 * 110.64130 * 359.97438 * 2 1 3 5 5 C 1.55155 * 110.72202 * 236.65919 * 2 1 3 6 6 C 1.55132 * 101.48719 * 205.96883 * 5 2 1 7 7 N 1.47421 * 104.71716 * 37.29974 * 6 5 2 8 8 C 1.34784 * 125.64691 * 155.81843 * 7 6 5 9 9 O 1.21279 * 119.99925 * 179.68315 * 8 7 6 10 10 C 1.50696 * 119.99631 * 359.69065 * 8 7 6 11 11 C 1.53004 * 109.46630 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46977 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.47026 * 108.70759 * 335.54968 * 7 6 5 23 23 H 1.08993 * 109.47106 * 296.86218 * 1 2 3 24 24 H 1.09005 * 109.46854 * 56.86182 * 1 2 3 25 25 H 1.09000 * 109.46894 * 176.86138 * 1 2 3 26 26 H 1.08996 * 111.00640 * 324.21234 * 5 2 1 27 27 H 1.09004 * 111.00440 * 88.02304 * 5 2 1 28 28 H 1.08992 * 110.49745 * 278.45675 * 6 5 2 29 29 H 1.09000 * 110.33989 * 156.06084 * 6 5 2 30 30 H 1.08988 * 109.47520 * 59.99985 * 10 8 7 31 31 H 1.08997 * 109.47026 * 299.99111 * 10 8 7 32 32 H 1.08999 * 109.47785 * 59.99993 * 11 10 8 33 33 H 1.09000 * 109.46944 * 299.99068 * 11 10 8 34 34 H 1.09004 * 109.47166 * 59.99234 * 12 11 10 35 35 H 1.09005 * 109.46988 * 299.99622 * 12 11 10 36 36 H 1.09004 * 109.47330 * 59.99726 * 13 12 11 37 37 H 1.08997 * 109.47279 * 300.00213 * 13 12 11 38 38 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.88045 * 120.70752 * 22 7 6 40 40 H 1.09001 * 109.88127 * 241.71901 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0489 1.3775 0.0000 4 7 2.4494 2.4406 -0.0011 5 6 2.0790 -0.7976 -1.2123 6 6 3.4667 -1.2467 -0.6839 7 7 3.2445 -1.5495 0.7417 8 6 3.9923 -2.3810 1.4940 9 8 3.7194 -2.5514 2.6634 10 6 5.1675 -3.0989 0.8821 11 6 5.8395 -3.9733 1.9427 12 6 7.0323 -4.7027 1.3213 13 6 7.7047 -5.5765 2.3820 14 6 8.8792 -6.2955 1.7698 15 1 9.1215 -6.1445 0.7282 16 6 9.6438 -7.1468 2.5392 17 7 9.3513 -7.3271 3.8087 18 14 11.1000 -8.0373 1.7805 19 1 12.3213 -7.2059 1.9302 20 1 11.2988 -9.3376 2.4696 21 1 10.8375 -8.2763 0.3385 22 6 2.0759 -0.7891 1.2087 23 1 -0.3633 0.4643 0.9167 24 1 -0.3633 0.5618 -0.8606 25 1 -0.3633 -1.0261 -0.0563 26 1 1.4453 -1.6561 -1.4346 27 1 2.1845 -0.1557 -2.0870 28 1 4.1947 -0.4429 -0.7920 29 1 3.8032 -2.1383 -1.2130 30 1 5.8836 -2.3686 0.5058 31 1 4.8223 -3.7262 0.0603 32 1 5.1231 -4.7038 2.3187 33 1 6.1847 -3.3464 2.7649 34 1 7.7488 -3.9725 0.9450 35 1 6.6868 -5.3297 0.4993 36 1 6.9884 -6.3067 2.7587 37 1 8.0502 -4.9494 3.2037 38 1 9.8890 -7.9263 4.3498 39 1 1.3130 -1.4731 1.5801 40 1 2.3735 -0.1009 1.9999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598416926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -33.296311 kcal Electronic energy + Delta-G solvation = -19099.436040 eV Core-core repulsion = 16106.318665 eV Total energy + Delta-G solvation = -2993.117375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62794 -38.57472 -36.31453 -34.89644 -33.53238 -32.57044 -30.21701 -29.85432 -27.31640 -25.41473 -23.79915 -22.92551 -22.00452 -20.01339 -19.35521 -17.89645 -16.94076 -16.19469 -16.10430 -15.50804 -14.96124 -14.69297 -14.47956 -14.38309 -14.01332 -13.62742 -13.31654 -13.09119 -12.87964 -12.72670 -12.59123 -12.39872 -12.09179 -11.80807 -11.76033 -11.62830 -11.51288 -11.33524 -10.97712 -10.53519 -10.49764 -10.40160 -9.86962 -9.60410 -9.22149 -8.97676 -8.91492 -8.29593 -5.94451 -3.96915 2.24171 2.31073 2.64069 2.71922 3.28571 3.34612 3.40644 3.43664 3.81942 3.93818 4.20229 4.49403 4.65359 4.67029 4.74352 5.03913 5.06885 5.14790 5.23176 5.25976 5.29786 5.38161 5.40632 5.41077 5.48788 5.52096 5.80876 5.98163 6.13890 6.30822 6.54871 6.84305 7.01551 7.09040 7.20223 7.29693 7.75100 7.91126 8.07049 8.13760 8.48787 9.10874 9.66675 11.16916 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.046648 B = 0.002801 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.090822 B = 9993.752330 C =10173.464069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.020 3.980 3 C 0.216 3.784 4 N -0.422 5.422 5 C -0.118 4.118 6 C 0.094 3.906 7 N -0.629 5.629 8 C 0.530 3.470 9 O -0.530 6.530 10 C -0.133 4.133 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.120 3.880 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 13.642 -12.202 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 C -0.102 4.102 4 N -0.096 5.096 5 C -0.157 4.157 6 C -0.029 4.029 7 N -0.366 5.366 8 C 0.320 3.680 9 O -0.405 6.405 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.004 4.004 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.927 15.011 -11.336 26.684 hybrid contribution 0.741 -0.770 -0.378 1.134 sum -18.186 14.240 -11.714 25.898 Atomic orbital electron populations 1.21806 0.89656 1.04203 1.03656 1.19190 0.97247 0.83669 0.98300 1.28707 0.93543 0.94296 0.93669 1.81267 1.08408 1.12182 1.07786 1.23032 0.96338 1.00279 0.96007 1.22457 0.97142 1.01782 0.81490 1.48616 1.30572 1.45955 1.11423 1.20865 0.83300 0.77791 0.86000 1.90726 1.70332 1.63055 1.16351 1.21791 0.94709 0.99751 1.01051 1.21480 0.98033 0.98040 0.96687 1.21646 0.95008 0.98312 0.99773 1.19095 0.94935 0.94137 0.93576 1.21285 1.12549 1.25531 0.96482 0.92758 1.25046 0.97732 0.96939 0.94873 1.69978 1.39787 1.37504 1.06211 0.86611 0.83043 0.79150 0.79283 1.20720 1.21258 1.19918 1.21924 0.89200 0.94724 0.94525 0.91098 0.91008 0.89804 0.87963 0.88867 0.91138 0.89091 0.89166 0.89010 0.91702 0.91789 0.93494 0.93440 0.96570 0.96594 0.93044 0.89197 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.40 8.44 37.16 0.31 -0.08 16 2 C 0.02 0.11 0.86 -155.46 -0.13 -0.03 16 3 C 0.22 1.82 13.65 -20.76 -0.28 1.54 16 4 N -0.42 -4.85 18.54 42.15 0.78 -4.06 16 5 C -0.12 -0.45 6.02 -24.46 -0.15 -0.59 16 6 C 0.09 0.59 6.50 -2.41 -0.02 0.58 16 7 N -0.63 -6.17 3.32 -170.38 -0.57 -6.74 16 8 C 0.53 7.28 7.85 -10.98 -0.09 7.20 16 9 O -0.53 -9.53 16.31 5.56 0.09 -9.43 16 10 C -0.13 -1.74 4.70 -27.88 -0.13 -1.87 16 11 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.12 0.97 6.01 -3.06 -0.02 0.95 16 23 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.08 0.14 8.10 -51.93 -0.42 -0.28 16 26 H 0.10 0.23 8.02 -51.93 -0.42 -0.19 16 27 H 0.09 0.26 8.03 -51.93 -0.42 -0.16 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.46 7.48 -51.93 -0.39 0.07 16 30 H 0.09 1.04 8.14 -51.94 -0.42 0.62 16 31 H 0.09 0.99 7.85 -51.93 -0.41 0.59 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.09 0.66 7.82 -51.93 -0.41 0.25 16 40 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -35.77 338.07 -6.82 -42.59 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -6.63 Total: -7.42 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.31 Total: -10.07 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.95 Total: -37.64 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.77 -6.82 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598416926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.293 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds