Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 110.63988 * 2 1 4 4 N 2.60803 * 110.64130 * 359.97438 * 2 1 3 5 5 C 1.55155 * 110.72202 * 236.65919 * 2 1 3 6 6 C 1.55132 * 101.48719 * 205.96883 * 5 2 1 7 7 N 1.47421 * 104.71716 * 37.29974 * 6 5 2 8 8 C 1.34784 * 125.64691 * 155.81843 * 7 6 5 9 9 O 1.21279 * 119.99925 * 179.68315 * 8 7 6 10 10 C 1.50696 * 119.99631 * 359.69065 * 8 7 6 11 11 C 1.53004 * 109.46630 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46977 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.47026 * 108.70759 * 335.54968 * 7 6 5 23 23 H 1.08993 * 109.47106 * 296.86218 * 1 2 3 24 24 H 1.09005 * 109.46854 * 56.86182 * 1 2 3 25 25 H 1.09000 * 109.46894 * 176.86138 * 1 2 3 26 26 H 1.08996 * 111.00640 * 324.21234 * 5 2 1 27 27 H 1.09004 * 111.00440 * 88.02304 * 5 2 1 28 28 H 1.08992 * 110.49745 * 278.45675 * 6 5 2 29 29 H 1.09000 * 110.33989 * 156.06084 * 6 5 2 30 30 H 1.08988 * 109.47520 * 59.99985 * 10 8 7 31 31 H 1.08997 * 109.47026 * 299.99111 * 10 8 7 32 32 H 1.08999 * 109.47785 * 59.99993 * 11 10 8 33 33 H 1.09000 * 109.46944 * 299.99068 * 11 10 8 34 34 H 1.09004 * 109.47166 * 59.99234 * 12 11 10 35 35 H 1.09005 * 109.46988 * 299.99622 * 12 11 10 36 36 H 1.09004 * 109.47330 * 59.99726 * 13 12 11 37 37 H 1.08997 * 109.47279 * 300.00213 * 13 12 11 38 38 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.88045 * 120.70752 * 22 7 6 40 40 H 1.09001 * 109.88127 * 241.71901 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0489 1.3775 0.0000 4 7 2.4494 2.4406 -0.0011 5 6 2.0790 -0.7976 -1.2123 6 6 3.4667 -1.2467 -0.6839 7 7 3.2445 -1.5495 0.7417 8 6 3.9923 -2.3810 1.4940 9 8 3.7194 -2.5514 2.6634 10 6 5.1675 -3.0989 0.8821 11 6 5.8395 -3.9733 1.9427 12 6 7.0323 -4.7027 1.3213 13 6 7.7047 -5.5765 2.3820 14 6 8.8792 -6.2955 1.7698 15 1 9.1215 -6.1445 0.7282 16 6 9.6438 -7.1468 2.5392 17 7 9.3513 -7.3271 3.8087 18 14 11.1000 -8.0373 1.7805 19 1 12.3213 -7.2059 1.9302 20 1 11.2988 -9.3376 2.4696 21 1 10.8375 -8.2763 0.3385 22 6 2.0759 -0.7891 1.2087 23 1 -0.3633 0.4643 0.9167 24 1 -0.3633 0.5618 -0.8606 25 1 -0.3633 -1.0261 -0.0563 26 1 1.4453 -1.6561 -1.4346 27 1 2.1845 -0.1557 -2.0870 28 1 4.1947 -0.4429 -0.7920 29 1 3.8032 -2.1383 -1.2130 30 1 5.8836 -2.3686 0.5058 31 1 4.8223 -3.7262 0.0603 32 1 5.1231 -4.7038 2.3187 33 1 6.1847 -3.3464 2.7649 34 1 7.7488 -3.9725 0.9450 35 1 6.6868 -5.3297 0.4993 36 1 6.9884 -6.3067 2.7587 37 1 8.0502 -4.9494 3.2037 38 1 9.8890 -7.9263 4.3498 39 1 1.3130 -1.4731 1.5801 40 1 2.3735 -0.1009 1.9999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598416926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = -56.178910 kcal Electronic energy + Delta-G solvation = -19100.428304 eV Core-core repulsion = 16106.318665 eV Total energy + Delta-G solvation = -2994.109639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38981 -39.46671 -37.11220 -36.59610 -34.64236 -34.12882 -31.49796 -30.69934 -28.33848 -26.80662 -24.73601 -23.59588 -23.33678 -21.71826 -20.23203 -18.56725 -18.41718 -17.75182 -17.10840 -16.56422 -16.27142 -16.04077 -15.35205 -15.23578 -14.87382 -14.52703 -14.21956 -14.09820 -13.91598 -13.69503 -13.51032 -13.45515 -13.22607 -13.18312 -12.80892 -12.73272 -12.34301 -12.22368 -12.15096 -12.09365 -12.07631 -11.73994 -11.36102 -11.33600 -11.15006 -10.78437 -10.54020 -9.73075 -8.17779 -6.29854 1.41211 1.43442 1.54533 1.57784 1.60897 1.66563 1.92900 2.42859 2.72586 3.15056 3.29758 3.48337 3.77265 3.83296 4.04780 4.14723 4.24432 4.32119 4.56173 4.62144 4.67857 4.69602 4.75781 4.84727 4.86433 4.89232 4.98351 5.03087 5.14821 5.20580 5.27061 5.34344 5.37136 5.39580 5.58186 5.79747 5.89515 6.26494 6.40080 6.46547 6.88924 7.14133 7.39795 8.94574 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.046648 B = 0.002801 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.090822 B = 9993.752330 C =10173.464069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 C 0.240 3.760 4 N -0.481 5.481 5 C -0.106 4.106 6 C 0.082 3.918 7 N -0.623 5.623 8 C 0.526 3.474 9 O -0.587 6.587 10 C -0.122 4.122 11 C -0.097 4.097 12 C -0.095 4.095 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.067 0.933 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.258 1.258 22 C 0.114 3.886 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.129 0.871 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.064 0.936 36 H -0.014 1.014 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.100 0.900 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 13.408 -15.633 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.025 3.975 3 C -0.078 4.078 4 N -0.156 5.156 5 C -0.144 4.144 6 C -0.040 4.040 7 N -0.357 5.357 8 C 0.317 3.683 9 O -0.467 6.467 10 C -0.162 4.162 11 C -0.135 4.135 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.793 3.207 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.182 1.182 22 C -0.010 4.010 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.123 0.877 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.585 14.816 -14.830 28.688 hybrid contribution 0.900 -0.672 0.729 1.339 sum -18.685 14.144 -14.101 27.350 Atomic orbital electron populations 1.21870 0.87281 1.05783 1.04134 1.19362 0.98748 0.81491 0.97881 1.29313 0.91990 0.94576 0.91889 1.81289 1.10411 1.14167 1.09740 1.23130 0.94816 1.01096 0.95381 1.22820 0.98975 1.02829 0.79368 1.48598 1.30015 1.44285 1.12810 1.20908 0.83698 0.78281 0.85451 1.90707 1.71910 1.65325 1.18725 1.21653 0.94756 0.99856 0.99909 1.21265 0.96936 0.97864 0.97441 1.21440 0.95729 0.97889 0.98159 1.19059 0.94486 0.93912 0.94434 1.21766 1.13173 1.25752 0.97187 0.91500 1.26100 1.01148 0.97923 0.95283 1.70137 1.41387 1.38416 1.07988 0.85384 0.78728 0.77570 0.78978 1.19870 1.20943 1.18154 1.22068 0.88917 0.94671 0.95358 0.91492 0.89684 0.87749 0.85243 0.87017 0.91422 0.86939 0.87069 0.85723 0.93479 0.94282 0.92305 0.91689 0.99551 0.99943 0.92872 0.88174 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.36 8.44 71.98 0.61 0.25 16 2 C 0.03 0.24 0.86 -52.80 -0.05 0.19 16 3 C 0.24 3.74 13.65 89.44 1.22 4.96 16 4 N -0.48 -10.93 18.54 20.01 0.37 -10.56 16 5 C -0.11 -0.36 6.02 32.06 0.19 -0.17 16 6 C 0.08 0.75 6.50 86.93 0.57 1.32 16 7 N -0.62 -11.14 3.32 -811.36 -2.70 -13.84 16 8 C 0.53 14.11 7.85 87.65 0.69 14.80 16 9 O -0.59 -21.83 16.31 -3.03 -0.05 -21.88 16 10 C -0.12 -2.96 4.70 29.85 0.14 -2.82 16 11 C -0.10 -3.48 4.50 30.60 0.14 -3.34 16 12 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 13 C 0.02 1.00 4.97 29.85 0.15 1.15 16 14 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 16 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 17 N -0.94 -59.27 13.29 21.45 0.28 -58.98 16 18 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 C 0.11 1.69 6.01 86.73 0.52 2.21 16 23 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.08 0.07 8.14 -2.38 -0.02 0.05 16 25 H 0.10 -0.08 8.10 -2.39 -0.02 -0.10 16 26 H 0.13 -0.14 8.02 -2.39 -0.02 -0.16 16 27 H 0.11 0.09 8.03 -2.39 -0.02 0.07 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.61 7.48 -2.39 -0.02 0.60 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.12 2.22 7.85 -2.39 -0.02 2.20 16 32 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 36 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 38 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.10 1.32 7.82 -2.39 -0.02 1.30 16 40 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 Total: -1.00 -82.25 338.07 5.97 -76.29 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: 1.00 Total: -1.61 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 5.03 Total: -16.19 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.04 Total: -83.38 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -82.25 5.97 -76.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598416926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.108 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds