Wall clock time and date at job start Mon Mar 30 2020 07:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46714 * 2 1 4 4 C 1.50700 * 109.47575 * 240.00217 * 2 1 3 5 5 H 1.07997 * 119.99600 * 239.99918 * 4 2 1 6 6 C 1.37875 * 119.99990 * 59.99657 * 4 2 1 7 7 N 1.31523 * 119.99985 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00139 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47489 * 89.99570 * 8 6 4 10 10 H 1.48499 * 109.47408 * 209.99871 * 8 6 4 11 11 H 1.48500 * 109.47163 * 329.99614 * 8 6 4 12 12 N 1.46500 * 109.47093 * 119.99767 * 2 1 3 13 13 N 1.39195 * 124.46419 * 59.70510 * 12 2 1 14 14 C 1.27840 * 112.85935 * 179.75612 * 13 12 2 15 15 C 1.51168 * 125.50013 * 177.78107 * 14 13 12 16 16 C 1.57737 * 101.65836 * 41.21762 * 15 14 13 17 17 C 1.57932 * 96.77939 * 55.75445 * 16 15 14 18 18 C 1.49530 * 108.38671 * 50.31009 * 17 16 15 19 19 C 1.49512 * 122.59277 * 274.59415 * 18 17 16 20 20 C 1.54372 * 113.81842 * 322.78143 * 19 18 17 21 21 C 1.49910 * 107.52452 * 359.05056 * 14 13 12 22 22 H 1.08998 * 114.72794 * 126.94643 * 21 14 13 23 23 C 1.35004 * 124.46245 * 240.00198 * 12 2 1 24 24 O 1.21301 * 127.63320 * 1.43738 * 23 12 2 25 25 H 1.09006 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47634 * 299.99889 * 1 2 3 27 27 H 1.08998 * 109.47537 * 60.00625 * 1 2 3 28 28 H 0.96996 * 119.99929 * 180.02562 * 7 6 4 29 29 H 1.09002 * 110.98770 * 283.12466 * 15 14 13 30 30 H 1.08998 * 111.03745 * 159.33323 * 15 14 13 31 31 H 1.09002 * 111.90109 * 298.84015 * 16 15 14 32 32 H 1.08993 * 111.90151 * 172.67468 * 16 15 14 33 33 H 1.08999 * 109.68630 * 290.57828 * 17 16 15 34 34 H 1.09003 * 109.67536 * 170.03019 * 17 16 15 35 35 H 1.09003 * 106.76972 * 151.19613 * 18 17 16 36 36 H 1.08998 * 106.77024 * 37.99078 * 18 17 16 37 37 H 1.09000 * 108.61143 * 201.66508 * 19 18 17 38 38 H 1.08996 * 108.50597 * 83.82222 * 19 18 17 39 39 H 1.08996 * 109.90355 * 337.88184 * 20 19 18 40 40 H 1.09002 * 109.96326 * 216.78821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3431 -2.1617 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6295 -1.7580 -3.7122 12 7 2.0183 -0.6906 1.1962 13 7 1.7350 -2.0165 1.5111 14 6 2.2788 -2.3943 2.6046 15 6 2.1214 -3.7579 3.2380 16 6 2.2047 -4.7054 1.9796 17 6 3.6036 -4.1946 1.4539 18 6 4.5722 -4.2167 2.5928 19 6 4.7020 -3.0855 3.5617 20 6 4.5479 -1.6914 2.9168 21 6 3.0620 -1.2352 3.1433 22 1 2.8306 -0.9684 4.1745 23 6 2.7976 -0.1230 2.1413 24 8 3.1977 1.0213 2.1822 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.7089 1.1614 -3.4844 29 1 1.1543 -3.8494 3.7324 30 1 2.9344 -3.9618 3.9348 31 1 1.4048 -4.5056 1.2667 32 1 2.2365 -5.7571 2.2640 33 1 3.5045 -3.1771 1.0758 34 1 3.9579 -4.8496 0.6579 35 1 5.5606 -4.3770 2.1620 36 1 4.3487 -5.1084 3.1785 37 1 5.6823 -3.1434 4.0349 38 1 3.9381 -3.1993 4.3308 39 1 4.7591 -1.7511 1.8492 40 1 5.2293 -0.9848 3.3906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601935658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:48 Heat of formation + Delta-G solvation = 43.909307 kcal Electronic energy + Delta-G solvation = -21473.282841 eV Core-core repulsion = 18483.513353 eV Total energy + Delta-G solvation = -2989.769489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35971 -38.11505 -36.26881 -34.29646 -33.05973 -31.76450 -29.50555 -28.17240 -26.89066 -25.25996 -24.97062 -22.26222 -20.76483 -20.51923 -19.70925 -18.16882 -16.79147 -16.12063 -15.84302 -15.47435 -14.64238 -14.49700 -14.45038 -14.10761 -13.43906 -13.11489 -12.68730 -12.61386 -12.41105 -11.97276 -11.81045 -11.71373 -11.34837 -11.17153 -11.10387 -11.05258 -10.84604 -10.67389 -10.57920 -10.36981 -10.23031 -10.14373 -10.00660 -9.57263 -9.17950 -8.85625 -8.48549 -7.62565 -6.10732 -4.17420 2.19592 3.27074 3.31239 3.33974 3.37721 3.43026 4.27585 4.37991 4.48558 4.65941 4.77551 4.95219 4.96486 5.16603 5.21082 5.29099 5.44199 5.46717 5.70634 5.77278 5.82032 5.85319 6.01213 6.04466 6.07463 6.16752 6.26260 6.33624 6.47864 6.59362 6.64556 6.77974 6.90131 6.97560 7.23655 7.56823 7.72469 7.95174 8.11908 8.57481 8.66805 8.90298 9.47751 10.95081 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.007446 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.546753 B = 3759.565488 C = 4289.862160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.284 3.716 3 H 0.063 0.937 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.435 5.435 13 N -0.206 5.206 14 C 0.062 3.938 15 C -0.069 4.069 16 C -0.117 4.117 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.091 4.091 21 C -0.145 4.145 22 H 0.133 0.867 23 C 0.489 3.511 24 O -0.517 6.517 25 H 0.040 0.960 26 H 0.009 0.991 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -11.123 12.404 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.186 3.814 3 H 0.080 0.920 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.254 5.254 13 N -0.012 5.012 14 C -0.131 4.131 15 C -0.107 4.107 16 C -0.154 4.154 17 C -0.170 4.170 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.130 4.130 21 C -0.169 4.169 22 H 0.150 0.850 23 C 0.275 3.725 24 O -0.392 6.392 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.581 -10.464 11.297 15.810 hybrid contribution 0.789 -0.003 -0.400 0.885 sum 4.370 -10.467 10.897 15.729 Atomic orbital electron populations 1.22054 0.97217 1.00410 1.00653 1.19083 0.91869 0.91989 0.78451 0.91968 1.21226 1.31799 1.12782 0.89682 0.91948 1.24888 0.94976 0.95011 0.99009 1.69870 1.36489 1.22668 1.23950 0.86416 0.79224 0.79268 0.82056 1.20463 1.21099 1.19934 1.50583 1.45762 1.05999 1.23065 1.74796 1.15726 0.96768 1.13951 1.24851 0.96850 0.96850 0.94560 1.22119 1.03265 0.87501 0.97784 1.23551 0.98060 0.97145 0.96695 1.22126 0.94682 1.03232 0.96941 1.20157 0.99721 0.98259 0.97357 1.21582 1.02020 0.93749 0.98653 1.22354 0.91954 0.96484 1.02250 1.22572 0.98656 0.94306 1.01400 0.84982 1.21334 0.79044 0.88204 0.83909 1.90692 1.53752 1.17603 1.77171 0.94043 0.97183 0.88527 0.92564 0.90334 0.86785 0.89579 0.91216 0.90076 0.92436 0.93541 0.92545 0.91855 0.90314 0.90814 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.18 37.16 0.34 -3.31 16 2 C 0.28 7.56 2.98 -69.08 -0.21 7.35 16 3 H 0.06 1.85 7.69 -51.93 -0.40 1.45 16 4 C -0.52 -14.42 8.72 -34.44 -0.30 -14.72 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.44 -10.10 3.23 -54.39 -0.18 -10.28 16 13 N -0.21 -4.10 9.81 35.45 0.35 -3.75 16 14 C 0.06 0.95 3.80 -79.13 -0.30 0.65 16 15 C -0.07 -0.75 6.05 -25.06 -0.15 -0.90 16 16 C -0.12 -1.38 6.60 -21.43 -0.14 -1.52 16 17 C -0.13 -1.76 5.58 -25.74 -0.14 -1.91 16 18 C -0.12 -1.24 4.16 -30.17 -0.13 -1.37 16 19 C -0.12 -1.24 5.09 -27.73 -0.14 -1.38 16 20 C -0.09 -1.26 5.20 -23.80 -0.12 -1.38 16 21 C -0.15 -2.28 3.91 -90.44 -0.35 -2.64 16 22 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 23 C 0.49 10.69 7.47 -10.23 -0.08 10.61 16 24 O -0.52 -12.89 17.58 5.54 0.10 -12.80 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 2.60 6.07 -51.93 -0.32 2.28 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 0.97 3.41 -51.93 -0.18 0.80 16 31 H 0.09 1.21 7.76 -51.93 -0.40 0.81 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.39 4.33 -51.93 -0.22 1.17 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.06 0.48 7.30 -51.93 -0.38 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.67 4.87 -51.93 -0.25 0.42 16 39 H 0.07 1.22 6.87 -51.93 -0.36 0.86 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -31.38 304.51 -7.21 -38.59 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.86 Total: 0.76 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.82 Total: -8.86 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.80 Total: -38.80 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.10 Total: -12.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.38 -7.21 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.496 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds