Wall clock time and date at job start Mon Mar 30 2020 07:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47022 * 2 1 4 4 C 1.50702 * 109.46663 * 119.99483 * 2 1 3 5 5 H 1.08005 * 119.99965 * 119.99824 * 4 2 1 6 6 C 1.37877 * 120.00313 * 300.00153 * 4 2 1 7 7 N 1.31522 * 119.99718 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47276 * 59.99694 * 8 6 4 10 10 H 1.48504 * 109.46909 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47012 * 299.99582 * 8 6 4 12 12 N 1.46494 * 109.47360 * 239.99391 * 2 1 3 13 13 N 1.39821 * 124.46155 * 299.98086 * 12 2 1 14 14 C 1.23418 * 113.20483 * 179.39771 * 13 12 2 15 15 C 1.50453 * 139.98041 * 186.18460 * 14 13 12 16 16 C 1.50082 * 102.21949 * 233.41580 * 15 14 13 17 17 C 1.46004 * 121.19132 * 230.93918 * 16 15 14 18 18 C 1.56942 * 106.56885 * 77.50778 * 17 16 15 19 19 C 1.53613 * 108.36596 * 299.57727 * 18 17 16 20 20 C 1.51797 * 115.16237 * 99.28767 * 19 18 17 21 21 C 1.48845 * 122.31449 * 322.37996 * 20 19 18 22 22 H 1.08994 * 110.52999 * 47.93520 * 21 20 19 23 23 C 1.35536 * 124.48707 * 120.08991 * 12 2 1 24 24 O 1.21302 * 127.23718 * 355.00511 * 23 12 2 25 25 H 1.08996 * 109.47287 * 300.00979 * 1 2 3 26 26 H 1.09001 * 109.46732 * 60.00211 * 1 2 3 27 27 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99747 * 179.97438 * 7 6 4 29 29 H 1.09002 * 110.89290 * 115.17023 * 15 14 13 30 30 H 1.08997 * 110.89036 * 351.65846 * 15 14 13 31 31 H 1.09005 * 107.07002 * 353.94963 * 16 15 14 32 32 H 1.09004 * 107.06886 * 107.98632 * 16 15 14 33 33 H 1.08997 * 110.02997 * 196.76777 * 17 16 15 34 34 H 1.08999 * 110.03205 * 318.14189 * 17 16 15 35 35 H 1.09004 * 109.68106 * 59.29156 * 18 17 16 36 36 H 1.08994 * 109.68382 * 179.81613 * 18 17 16 37 37 H 1.08994 * 108.34102 * 220.76533 * 19 18 17 38 38 H 1.09003 * 108.34447 * 337.81379 * 19 18 17 39 39 H 1.09004 * 106.83207 * 85.69728 * 20 19 18 40 40 H 1.09001 * 106.83099 * 199.06066 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3223 -1.1193 4.0081 9 1 3.8073 -1.1188 4.0080 10 1 1.8276 -0.4188 5.2205 11 1 1.8277 -2.5195 4.0084 12 7 2.0184 -0.6907 -1.1960 13 7 1.7390 -2.0245 -1.5089 14 6 2.2463 -2.3910 -2.5727 15 6 2.2556 -3.5790 -3.4957 16 6 3.7228 -3.8636 -3.6325 17 6 4.3444 -4.0159 -4.9448 18 6 4.5232 -2.5691 -5.5260 19 6 3.1358 -1.9203 -5.6446 20 6 2.7678 -0.9730 -4.5170 21 6 3.1486 -1.2343 -3.1021 22 1 4.2021 -1.5053 -3.0335 23 6 2.8023 -0.1221 -2.1443 24 8 3.1514 1.0378 -2.2094 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7087 1.1617 3.4843 29 1 1.8173 -3.3249 -4.4608 30 1 1.7359 -4.4249 -3.0457 31 1 4.2535 -3.0622 -3.1183 32 1 3.9246 -4.7787 -3.0756 33 1 5.3156 -4.5003 -4.8440 34 1 3.6998 -4.6049 -5.5972 35 1 5.1484 -1.9789 -4.8559 36 1 4.9890 -2.6236 -6.5099 37 1 3.0944 -1.3685 -6.5837 38 1 2.3887 -2.7130 -5.6844 39 1 3.1765 0.0031 -4.7787 40 1 1.6834 -0.8645 -4.5372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601935663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:56 Heat of formation + Delta-G solvation = 10.800602 kcal Electronic energy + Delta-G solvation = -20956.397412 eV Core-core repulsion = 17965.192222 eV Total energy + Delta-G solvation = -2991.205190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.79234 -39.40315 -38.29604 -36.36179 -34.05268 -33.84781 -31.78981 -30.53659 -28.32967 -27.40374 -25.77025 -23.61667 -22.38908 -21.93743 -20.56162 -20.40933 -18.49607 -17.83894 -17.23997 -16.85314 -16.57469 -16.02582 -15.47390 -15.31526 -14.85920 -14.77907 -14.49144 -14.15711 -13.95180 -13.80414 -13.35070 -13.15169 -13.08357 -12.84662 -12.70255 -12.51376 -12.40617 -12.32070 -12.22596 -11.77298 -11.59446 -11.49483 -11.38328 -11.04872 -10.65414 -10.62136 -10.28725 -9.55376 -8.25223 -6.41903 0.78095 1.36187 1.39332 1.44996 1.49356 1.77749 2.35186 2.66202 3.02861 3.16898 3.63640 3.81961 3.90219 4.02345 4.17401 4.29721 4.37763 4.39381 4.51759 4.69065 4.75584 4.80244 4.82857 4.87257 4.95434 5.03741 5.16091 5.21768 5.25496 5.31652 5.38077 5.43527 5.46871 5.56735 5.60279 5.68144 5.71967 5.83272 6.03054 6.58108 6.80452 7.06623 7.28302 8.79947 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028761 B = 0.005577 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.314855 B = 5019.093729 C = 5436.464989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.287 3.713 3 H 0.019 0.981 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.266 1.266 12 N -0.457 5.457 13 N -0.243 5.243 14 C 0.096 3.904 15 C -0.025 4.025 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.106 4.106 20 C -0.087 4.087 21 C -0.143 4.143 22 H 0.144 0.856 23 C 0.471 3.529 24 O -0.561 6.561 25 H 0.078 0.922 26 H 0.019 0.981 27 H 0.043 0.957 28 H 0.270 0.730 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -12.930 -17.812 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.188 3.812 3 H 0.037 0.963 4 C -0.578 4.578 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.191 1.191 12 N -0.274 5.274 13 N -0.043 5.043 14 C -0.100 4.100 15 C -0.063 4.063 16 C -0.174 4.174 17 C -0.141 4.141 18 C -0.163 4.163 19 C -0.142 4.142 20 C -0.126 4.126 21 C -0.167 4.167 22 H 0.161 0.839 23 C 0.260 3.740 24 O -0.440 6.440 25 H 0.097 0.903 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.795 -12.255 -16.727 21.080 hybrid contribution 0.758 0.916 1.034 1.576 sum 4.553 -11.338 -15.693 19.888 Atomic orbital electron populations 1.21813 0.96275 1.00220 1.00139 1.18670 0.92569 0.90176 0.79828 0.96342 1.21339 1.32648 1.12918 0.90928 0.93068 1.25749 0.94844 0.95656 1.01934 1.69979 1.36756 1.23553 1.25023 0.85408 0.78446 0.78820 0.77751 1.20074 1.19896 1.19132 1.50830 1.47505 1.06026 1.23005 1.72729 1.19604 0.95946 1.16058 1.26100 0.93289 0.98820 0.91838 1.20320 0.98602 0.90953 0.96464 1.20023 0.94216 1.02770 1.00415 1.20958 1.01356 0.96328 0.95425 1.22527 0.96039 0.95984 1.01793 1.21508 0.98818 0.98576 0.95347 1.19970 1.01298 1.01496 0.89826 1.22092 1.03855 0.93393 0.97317 0.83862 1.21997 0.78180 0.89236 0.84635 1.90632 1.57316 1.19035 1.76983 0.90300 0.96227 0.93825 0.92107 0.84756 0.87886 0.93573 0.91725 0.90358 0.89121 0.93288 0.90029 0.90141 0.89070 0.93346 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.19 71.98 0.66 -6.03 16 2 C 0.29 16.43 2.99 44.25 0.13 16.56 16 3 H 0.02 1.21 7.69 -2.39 -0.02 1.20 16 4 C -0.54 -31.89 8.72 25.60 0.22 -31.66 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.46 -22.75 3.26 -444.92 -1.45 -24.20 16 13 N -0.24 -10.21 11.61 -40.01 -0.46 -10.67 16 14 C 0.10 2.95 6.77 48.85 0.33 3.29 16 15 C -0.02 -0.43 5.89 28.83 0.17 -0.26 16 16 C -0.14 -2.07 4.22 27.51 0.12 -1.96 16 17 C -0.10 -1.04 5.90 29.83 0.18 -0.86 16 18 C -0.13 -1.54 5.80 32.18 0.19 -1.35 16 19 C -0.11 -1.45 5.09 30.40 0.15 -1.30 16 20 C -0.09 -2.09 4.00 28.88 0.12 -1.97 16 21 C -0.14 -4.53 2.47 -11.80 -0.03 -4.56 16 22 H 0.14 4.16 5.23 -2.39 -0.01 4.15 16 23 C 0.47 21.97 7.87 87.57 0.69 22.66 16 24 O -0.56 -30.11 17.58 -3.10 -0.05 -30.16 16 25 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.14 1.64 4.77 -2.39 -0.01 1.63 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.94 4.18 -2.38 -0.01 0.93 16 32 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 35 H 0.05 0.78 6.91 -2.39 -0.02 0.76 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.89 4.97 -2.39 -0.01 0.88 16 39 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 40 H 0.05 1.31 7.94 -2.39 -0.02 1.29 16 Total: -1.00 -74.68 305.85 4.71 -69.96 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.04 Total: 7.75 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 3.38 Total: -5.96 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -1.67 Total: -88.47 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.68 4.71 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.761 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds