Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47234 * 239.99986 * 2 1 3 5 5 C 1.50706 * 109.47010 * 119.99622 * 2 1 3 6 6 C 1.38092 * 119.58007 * 75.00005 * 5 2 1 7 7 C 1.38786 * 119.28622 * 179.97438 * 6 5 2 8 8 C 1.38418 * 118.48598 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.44453 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47336 * 104.99968 * 9 8 7 11 11 C 1.46904 * 111.00208 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47187 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99905 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99818 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00286 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47289 * 89.99362 * 16 14 12 18 18 H 1.48493 * 109.47257 * 209.99844 * 16 14 12 19 19 H 1.48507 * 109.47008 * 329.99955 * 16 14 12 20 20 C 1.38878 * 119.11524 * 359.97438 * 8 7 6 21 21 O 1.35671 * 119.68741 * 180.02562 * 20 8 7 22 22 N 1.31929 * 119.58762 * 254.72864 * 5 2 1 23 23 H 1.09003 * 109.47073 * 300.00287 * 1 2 3 24 24 H 1.09002 * 109.46988 * 60.00227 * 1 2 3 25 25 H 1.09000 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47289 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47021 * 299.99752 * 3 2 1 28 28 H 1.09003 * 109.47398 * 59.99912 * 3 2 1 29 29 H 1.09000 * 109.46725 * 300.00064 * 4 2 1 30 30 H 1.08992 * 109.47315 * 59.99979 * 4 2 1 31 31 H 1.09005 * 109.47176 * 180.02562 * 4 2 1 32 32 H 1.08005 * 120.35872 * 0.02562 * 6 5 2 33 33 H 1.08003 * 120.75353 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47422 * 225.00238 * 9 8 7 35 35 H 1.09008 * 109.47269 * 344.99896 * 9 8 7 36 36 H 1.00903 * 110.99812 * 303.95124 * 10 9 8 37 37 H 1.09000 * 109.46799 * 300.00129 * 11 10 9 38 38 H 1.09000 * 109.47169 * 60.00105 * 11 10 9 39 39 H 0.97008 * 120.00002 * 179.97438 * 15 14 12 40 40 H 0.96703 * 113.99981 * 89.99988 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 1.9665 -2.0881 1.2970 7 6 2.4313 -2.7360 2.4329 8 6 2.9469 -1.9711 3.4648 9 6 3.4633 -2.6287 4.7185 10 7 4.9320 -2.6053 4.7145 11 6 5.4720 -3.2400 5.9243 12 6 6.9779 -3.1976 5.8844 13 1 7.4833 -2.7448 5.0441 14 6 7.7104 -3.7368 6.9206 15 7 9.0245 -3.7003 6.8855 16 14 6.8363 -4.5206 8.3736 17 1 6.6225 -5.9648 8.1023 18 1 7.6672 -4.3638 9.5943 19 1 5.5242 -3.8560 8.5790 20 6 2.9821 -0.5894 3.3294 21 8 3.4855 0.1716 4.3335 22 7 2.5343 -0.0085 2.2285 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.5584 -2.6554 0.4735 33 1 2.3915 -3.8126 2.5098 34 1 3.0936 -2.0893 5.5905 35 1 3.1165 -3.6615 4.7564 36 1 5.2984 -3.0432 3.8826 37 1 5.1163 -2.7050 6.8049 38 1 5.1392 -4.2769 5.9700 39 1 9.5399 -4.0793 7.6147 40 1 4.4358 0.3363 4.2636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601966386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -19.187011 kcal Electronic energy + Delta-G solvation = -19739.169482 eV Core-core repulsion = 16746.663932 eV Total energy + Delta-G solvation = -2992.505550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70835 -37.81218 -36.02494 -35.35073 -32.87580 -31.97152 -30.16958 -27.52270 -27.43686 -27.34875 -24.79512 -23.13271 -21.95465 -21.14657 -19.83982 -18.04628 -17.00605 -16.57773 -16.12098 -15.29474 -15.08436 -14.30337 -14.23980 -14.13817 -13.90211 -13.69471 -13.40647 -13.05140 -12.62813 -12.38513 -12.25048 -12.22793 -11.81169 -11.78038 -11.51657 -11.47039 -11.22143 -11.07365 -10.89239 -10.73202 -10.50309 -9.89472 -9.67686 -9.37220 -9.19477 -8.64373 -8.53880 -7.61060 -6.09966 -4.08552 1.08687 1.30201 3.25731 3.33898 3.36486 3.54819 3.87165 4.38543 4.40108 4.60609 4.81434 4.86124 5.00103 5.02091 5.05314 5.22127 5.30543 5.39049 5.48907 5.49440 5.57033 5.61937 5.70864 5.78546 5.80057 5.87659 5.92214 6.10311 6.12057 6.17851 6.28708 6.35166 6.61702 6.72248 6.94715 7.53712 7.77980 7.81393 8.08532 8.21700 8.58371 8.97067 9.51549 11.03181 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.003736 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.164298 B = 7491.981426 C = 7553.329524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.127 4.127 4 C -0.140 4.140 5 C 0.155 3.845 6 C -0.184 4.184 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.101 3.899 10 N -0.674 5.674 11 C 0.165 3.835 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.339 3.661 21 O -0.477 6.477 22 N -0.501 5.501 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.334 0.666 37 H 0.029 0.971 38 H -0.020 1.020 39 H 0.264 0.736 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 4.611 -14.521 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.185 4.185 4 C -0.198 4.198 5 C 0.017 3.983 6 C -0.204 4.204 7 C -0.085 4.085 8 C -0.148 4.148 9 C -0.028 4.028 10 N -0.304 5.304 11 C 0.037 3.963 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.160 3.840 21 O -0.285 6.285 22 N -0.220 5.220 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.151 0.849 37 H 0.047 0.953 38 H -0.002 1.002 39 H 0.074 0.926 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -17.378 6.116 -13.913 23.087 hybrid contribution 0.025 -2.355 0.706 2.459 sum -17.353 3.761 -13.207 22.129 Atomic orbital electron populations 1.21867 0.93287 1.02053 1.02218 1.19500 0.95655 0.96056 0.90802 1.21673 1.01357 0.93887 1.01545 1.21940 1.01570 1.00182 0.96119 1.20760 0.94140 0.90252 0.93143 1.21811 1.03942 0.95280 0.99366 1.21449 0.94739 1.00349 0.91994 1.21038 1.01732 0.93801 0.98202 1.20747 0.90906 0.97208 0.93981 1.60531 1.02568 1.60864 1.06479 1.20029 0.96339 0.91239 0.88671 1.21025 0.88640 1.38379 1.07520 0.90327 1.24901 0.94727 0.95623 0.98036 1.69895 1.05035 1.45940 1.32928 0.86816 0.80122 0.79921 0.82598 1.20367 1.21098 1.19091 1.18928 0.93094 0.86429 0.85593 1.84632 1.29678 1.71847 1.42392 1.66971 1.12495 1.42042 1.00456 0.92373 0.91891 0.92458 0.92490 0.93070 0.91618 0.92231 0.91887 0.92234 0.84881 0.84737 0.89998 0.95228 0.84866 0.95282 1.00218 0.92585 0.73136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.40 37.16 0.31 -0.83 16 2 C -0.02 -0.19 0.87 -155.66 -0.14 -0.32 16 3 C -0.13 -1.30 7.80 37.16 0.29 -1.01 16 4 C -0.14 -1.13 8.08 37.16 0.30 -0.83 16 5 C 0.16 1.96 5.56 -82.60 -0.46 1.50 16 6 C -0.18 -2.12 9.07 -39.43 -0.36 -2.47 16 7 C -0.06 -0.75 9.80 -39.31 -0.39 -1.14 16 8 C -0.14 -2.18 5.42 -104.32 -0.57 -2.75 16 9 C 0.10 1.70 5.45 -4.98 -0.03 1.68 16 10 N -0.67 -13.42 6.48 -116.34 -0.75 -14.17 16 11 C 0.16 3.91 4.51 -4.97 -0.02 3.89 16 12 C -0.52 -14.57 9.87 -34.44 -0.34 -14.91 16 13 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 16 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.34 5.43 7.72 -17.12 -0.13 5.29 16 21 O -0.48 -7.74 12.91 -18.72 -0.24 -7.99 16 22 N -0.50 -7.59 9.05 -9.55 -0.09 -7.68 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 29 H 0.06 0.42 6.69 -51.93 -0.35 0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.16 6.72 -52.48 -0.35 0.81 16 33 H 0.13 1.42 8.05 -52.48 -0.42 1.00 16 34 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 35 H 0.03 0.47 8.00 -51.92 -0.42 0.05 16 36 H 0.33 6.54 8.71 -39.29 -0.34 6.20 16 37 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 38 H -0.02 -0.47 7.57 -51.93 -0.39 -0.86 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.41 5.69 9.06 45.56 0.41 6.10 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -31.47 329.83 -7.23 -38.70 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.60 Total: 6.07 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.62 Total: -10.00 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.07 Total: -48.50 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.24 Total: -7.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.47 -7.23 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601966386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.517 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds