Wall clock time and date at job start Mon Mar 30 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47234 * 239.99986 * 2 1 3 5 5 C 1.50706 * 109.47010 * 119.99622 * 2 1 3 6 6 C 1.38092 * 119.58007 * 75.00005 * 5 2 1 7 7 C 1.38786 * 119.28622 * 179.97438 * 6 5 2 8 8 C 1.38418 * 118.48598 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.44453 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47336 * 104.99968 * 9 8 7 11 11 C 1.46904 * 111.00208 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47187 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99905 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99818 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00286 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47289 * 89.99362 * 16 14 12 18 18 H 1.48493 * 109.47257 * 209.99844 * 16 14 12 19 19 H 1.48507 * 109.47008 * 329.99955 * 16 14 12 20 20 C 1.38878 * 119.11524 * 359.97438 * 8 7 6 21 21 O 1.35671 * 119.68741 * 180.02562 * 20 8 7 22 22 N 1.31929 * 119.58762 * 254.72864 * 5 2 1 23 23 H 1.09003 * 109.47073 * 300.00287 * 1 2 3 24 24 H 1.09002 * 109.46988 * 60.00227 * 1 2 3 25 25 H 1.09000 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47289 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47021 * 299.99752 * 3 2 1 28 28 H 1.09003 * 109.47398 * 59.99912 * 3 2 1 29 29 H 1.09000 * 109.46725 * 300.00064 * 4 2 1 30 30 H 1.08992 * 109.47315 * 59.99979 * 4 2 1 31 31 H 1.09005 * 109.47176 * 180.02562 * 4 2 1 32 32 H 1.08005 * 120.35872 * 0.02562 * 6 5 2 33 33 H 1.08003 * 120.75353 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47422 * 225.00238 * 9 8 7 35 35 H 1.09008 * 109.47269 * 344.99896 * 9 8 7 36 36 H 1.00903 * 110.99812 * 303.95124 * 10 9 8 37 37 H 1.09000 * 109.46799 * 300.00129 * 11 10 9 38 38 H 1.09000 * 109.47169 * 60.00105 * 11 10 9 39 39 H 0.97008 * 120.00002 * 179.97438 * 15 14 12 40 40 H 0.96703 * 113.99981 * 89.99988 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 1.9665 -2.0881 1.2970 7 6 2.4313 -2.7360 2.4329 8 6 2.9469 -1.9711 3.4648 9 6 3.4633 -2.6287 4.7185 10 7 4.9320 -2.6053 4.7145 11 6 5.4720 -3.2400 5.9243 12 6 6.9779 -3.1976 5.8844 13 1 7.4833 -2.7448 5.0441 14 6 7.7104 -3.7368 6.9206 15 7 9.0245 -3.7003 6.8855 16 14 6.8363 -4.5206 8.3736 17 1 6.6225 -5.9648 8.1023 18 1 7.6672 -4.3638 9.5943 19 1 5.5242 -3.8560 8.5790 20 6 2.9821 -0.5894 3.3294 21 8 3.4855 0.1716 4.3335 22 7 2.5343 -0.0085 2.2285 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.5584 -2.6554 0.4735 33 1 2.3915 -3.8126 2.5098 34 1 3.0936 -2.0893 5.5905 35 1 3.1165 -3.6615 4.7564 36 1 5.2984 -3.0432 3.8826 37 1 5.1163 -2.7050 6.8049 38 1 5.1392 -4.2769 5.9700 39 1 9.5399 -4.0793 7.6147 40 1 4.4358 0.3363 4.2636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601966386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:48 Heat of formation + Delta-G solvation = -43.812561 kcal Electronic energy + Delta-G solvation = -19740.237326 eV Core-core repulsion = 16746.663932 eV Total energy + Delta-G solvation = -2993.573394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74401 -38.83182 -37.37534 -36.57549 -34.72391 -33.37214 -31.44319 -29.16500 -28.12458 -28.09750 -26.19810 -24.20209 -23.34063 -22.86070 -20.74800 -19.18268 -18.99210 -17.77192 -17.22593 -16.66778 -16.24798 -15.93901 -15.48980 -15.28497 -15.11852 -14.75375 -14.56812 -14.31889 -14.06482 -13.70497 -13.51990 -13.10377 -12.95517 -12.83757 -12.65076 -12.55899 -12.50827 -12.28168 -12.05091 -11.84922 -11.80541 -11.64381 -11.50944 -10.82857 -10.75091 -10.28145 -9.62070 -9.20639 -8.30973 -6.35623 0.02703 0.27847 1.34349 1.37280 1.48115 2.33459 2.50722 2.85148 3.03429 3.43570 3.57157 3.78834 3.88119 4.04165 4.10938 4.17485 4.23177 4.47173 4.54634 4.66367 4.74977 4.80760 4.82619 4.84836 4.93521 5.00308 5.03769 5.05471 5.07150 5.20285 5.24355 5.32464 5.45417 5.50800 5.52439 5.64729 5.89812 6.50276 6.59936 6.65751 6.73482 7.02872 7.29396 8.85644 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.003736 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.164298 B = 7491.981426 C = 7553.329524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 C -0.125 4.125 4 C -0.137 4.137 5 C 0.148 3.852 6 C -0.175 4.175 7 C -0.055 4.055 8 C -0.161 4.161 9 C 0.110 3.890 10 N -0.679 5.679 11 C 0.176 3.824 12 C -0.527 4.527 13 H 0.038 0.962 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.251 1.251 20 C 0.315 3.685 21 O -0.493 6.493 22 N -0.524 5.524 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.336 0.664 37 H 0.025 0.975 38 H -0.010 1.010 39 H 0.268 0.732 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 3.205 -15.693 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 C -0.182 4.182 4 C -0.195 4.195 5 C 0.009 3.991 6 C -0.194 4.194 7 C -0.081 4.081 8 C -0.165 4.165 9 C -0.020 4.020 10 N -0.309 5.309 11 C 0.048 3.952 12 C -0.565 4.565 13 H 0.056 0.944 14 C -0.189 4.189 15 N -0.588 5.588 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.175 1.175 20 C 0.136 3.864 21 O -0.302 6.302 22 N -0.243 5.243 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.043 0.957 38 H 0.007 0.993 39 H 0.077 0.923 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -19.998 4.719 -15.104 25.501 hybrid contribution 0.830 -1.833 0.906 2.207 sum -19.168 2.885 -14.198 24.028 Atomic orbital electron populations 1.21854 0.91818 1.02949 1.02429 1.19655 0.96718 0.95450 0.90381 1.21645 1.00266 0.94680 1.01645 1.21936 1.00808 1.01091 0.95642 1.21435 0.93072 0.91306 0.93265 1.22189 1.02533 0.94898 0.99796 1.21776 0.93473 1.01523 0.91301 1.20917 1.03490 0.93542 0.98517 1.20652 0.88478 0.98158 0.94679 1.60368 1.04935 1.60486 1.05119 1.19759 0.93420 0.91877 0.90187 1.21302 0.91181 1.37682 1.06325 0.94391 1.25867 0.95399 0.96268 1.01395 1.70050 1.06962 1.47449 1.34297 0.85662 0.79296 0.79370 0.78265 1.18964 1.20789 1.17460 1.19144 0.94225 0.86947 0.86071 1.84600 1.30103 1.72268 1.43184 1.66991 1.13380 1.42960 1.00925 0.94038 0.89853 0.91211 0.94140 0.90809 0.93630 0.90662 0.90003 0.93461 0.81285 0.82158 0.91171 0.93484 0.84693 0.95669 0.99270 0.92342 0.72836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.40 71.98 0.60 -1.24 16 2 C -0.02 -0.37 0.87 -52.93 -0.05 -0.42 16 3 C -0.12 -2.45 7.80 71.98 0.56 -1.88 16 4 C -0.14 -1.76 8.08 71.98 0.58 -1.18 16 5 C 0.15 3.50 5.56 42.51 0.24 3.74 16 6 C -0.17 -3.48 9.07 22.37 0.20 -3.28 16 7 C -0.05 -1.25 9.80 22.44 0.22 -1.03 16 8 C -0.16 -4.74 5.42 -19.67 -0.11 -4.85 16 9 C 0.11 3.58 5.45 85.56 0.47 4.04 16 10 N -0.68 -26.98 6.48 -521.99 -3.38 -30.36 16 11 C 0.18 8.27 4.51 85.56 0.39 8.66 16 12 C -0.53 -30.27 9.87 25.60 0.25 -30.02 16 13 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 14 C 0.01 0.48 5.47 84.66 0.46 0.95 16 15 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 16 Si 0.95 43.84 27.47 68.60 1.88 45.72 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 20 C 0.31 10.20 7.72 84.78 0.65 10.85 16 21 O -0.49 -16.69 12.91 -89.88 -1.16 -17.85 16 22 N -0.52 -15.91 9.05 -296.98 -2.69 -18.60 16 23 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 1.06 7.86 -2.39 -0.02 1.04 16 29 H 0.07 0.73 6.69 -2.39 -0.02 0.72 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.17 2.12 6.72 -2.91 -0.02 2.10 16 33 H 0.16 2.77 8.05 -2.91 -0.02 2.75 16 34 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 35 H 0.05 1.38 8.00 -2.38 -0.02 1.36 16 36 H 0.34 13.15 8.71 -89.69 -0.78 12.37 16 37 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 38 H -0.01 -0.47 7.57 -2.39 -0.02 -0.49 16 39 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.41 12.34 9.06 -74.06 -0.67 11.67 16 Total: -1.00 -69.74 329.83 -1.04 -70.77 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.47 Total: 24.78 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.48 Total: -15.66 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -5.77 Total: -107.76 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.16 Total: -17.85 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -69.74 -1.04 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601966386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.960 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds