Wall clock time and date at job start Mon Mar 30 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34488 * 125.56723 * 2 1 4 4 C 1.46687 * 106.33294 * 179.97438 * 3 2 1 5 5 C 1.47261 * 126.94434 * 179.97438 * 4 3 2 6 6 O 1.21629 * 120.00111 * 170.53600 * 5 4 3 7 7 N 1.34773 * 119.99802 * 350.53450 * 5 4 3 8 8 C 1.46505 * 120.00208 * 1.89061 * 7 5 4 9 9 C 1.50694 * 109.47049 * 81.94225 * 8 7 5 10 10 H 1.08002 * 120.00064 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00082 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99680 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00242 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46777 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47208 * 119.99646 * 13 11 9 16 16 H 1.48501 * 109.46873 * 239.99691 * 13 11 9 17 17 C 1.46503 * 119.99755 * 181.88806 * 7 5 4 18 18 C 1.53003 * 109.46784 * 114.07815 * 17 7 5 19 19 C 1.52998 * 109.47108 * 234.07623 * 17 7 5 20 20 C 1.36776 * 106.11394 * 0.02562 * 4 3 2 21 21 C 1.50701 * 125.80144 * 180.02562 * 20 4 3 22 22 N 1.34660 * 108.39415 * 0.25871 * 20 4 3 23 23 H 0.96998 * 124.84763 * 179.73531 * 22 20 4 24 24 H 1.08999 * 109.47008 * 90.00041 * 1 2 3 25 25 H 1.09001 * 109.47063 * 209.99427 * 1 2 3 26 26 H 1.08993 * 109.47516 * 329.99650 * 1 2 3 27 27 H 1.08002 * 126.83482 * 359.96984 * 3 2 1 28 28 H 1.08998 * 109.46836 * 201.94426 * 8 7 5 29 29 H 1.08997 * 109.47131 * 321.94086 * 8 7 5 30 30 H 0.97000 * 119.99575 * 179.97438 * 12 11 9 31 31 H 1.08992 * 109.47305 * 354.07737 * 17 7 5 32 32 H 1.08996 * 109.47468 * 60.00359 * 18 17 7 33 33 H 1.09001 * 109.47126 * 179.97438 * 18 17 7 34 34 H 1.08993 * 109.47145 * 299.99832 * 18 17 7 35 35 H 1.08993 * 109.47482 * 59.99976 * 19 17 7 36 36 H 1.09001 * 109.46963 * 180.02562 * 19 17 7 37 37 H 1.09005 * 109.47366 * 300.00040 * 19 17 7 38 38 H 1.08999 * 109.46700 * 89.99387 * 21 20 4 39 39 H 1.09004 * 109.46781 * 330.00001 * 21 20 4 40 40 H 1.08994 * 109.46723 * 209.99515 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6743 0.6107 0.0006 5 6 4.8977 1.4304 0.0003 6 8 5.9812 0.9059 0.1741 7 7 4.8167 2.7618 -0.1925 8 6 3.5084 3.3994 -0.3606 9 6 2.8882 3.6373 0.9920 10 1 3.4158 3.3434 1.8874 11 6 1.6470 4.2303 1.0867 12 7 1.0047 4.5887 -0.0036 13 14 0.8783 4.5258 2.7634 14 1 1.7972 4.0362 3.8223 15 1 0.6386 5.9795 2.9487 16 1 -0.4120 3.7961 2.8519 17 6 6.0370 3.5715 -0.2341 18 6 6.2155 4.1530 -1.6380 19 6 5.9272 4.7117 0.7801 20 6 3.5998 -0.7550 0.0004 21 6 4.7723 -1.7018 0.0014 22 7 2.3008 -1.1097 -0.0061 23 1 1.9758 -2.0236 -0.0114 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9627 2.1235 -0.0005 28 1 3.6320 4.3517 -0.8762 29 1 2.8603 2.7495 -0.9483 30 1 0.1313 5.0055 0.0630 31 1 6.8957 2.9473 0.0125 32 1 5.3568 4.7772 -1.8847 33 1 7.1232 4.7557 -1.6689 34 1 6.2937 3.3406 -2.3605 35 1 5.8000 4.2976 1.7802 36 1 6.8350 5.3144 0.7488 37 1 5.0684 5.3360 0.5334 38 1 5.0540 -1.9301 1.0293 39 1 5.6146 -1.2375 -0.5116 40 1 4.4962 -2.6224 -0.5128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:46 Heat of formation + Delta-G solvation = 10.450646 kcal Electronic energy + Delta-G solvation = -21186.693458 eV Core-core repulsion = 18195.473093 eV Total energy + Delta-G solvation = -2991.220365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64652 -38.52187 -35.58631 -33.28401 -31.98122 -31.49608 -29.66594 -28.61053 -27.27986 -26.46739 -24.22299 -22.91993 -22.17081 -19.73758 -19.40107 -17.46135 -16.51132 -16.28897 -15.35621 -14.98366 -14.53283 -14.25890 -13.71546 -13.30067 -13.21461 -12.95746 -12.82005 -12.60271 -12.25888 -12.16726 -12.06518 -11.78518 -11.61302 -11.52485 -11.50690 -10.96738 -10.91234 -10.76168 -10.64432 -10.33844 -9.85040 -9.69922 -9.54547 -8.79633 -8.52260 -7.90930 -7.56042 -7.18195 -6.12154 -4.14912 2.50969 3.23881 3.28994 3.33787 3.40380 3.73281 4.22404 4.39082 4.52366 5.19658 5.40525 5.46363 5.58561 5.61686 5.69767 5.82933 5.95846 5.97561 6.00372 6.06319 6.21849 6.29431 6.33526 6.40304 6.48429 6.51137 6.51310 6.79086 6.87633 6.98142 7.07997 7.21075 7.40861 7.67834 7.80488 7.88376 7.94952 8.14645 8.18370 8.58788 8.93614 9.34585 9.49307 10.92381 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.011084 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.132303 B = 2525.482025 C = 4147.125720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.137 4.137 4 C -0.219 4.219 5 C 0.591 3.409 6 O -0.591 6.591 7 N -0.588 5.588 8 C 0.221 3.779 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.136 3.864 18 C -0.157 4.157 19 C -0.151 4.151 20 C 0.077 3.923 21 C -0.081 4.081 22 N -0.556 5.556 23 H 0.402 0.598 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.211 0.789 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -6.997 -1.864 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.142 4.142 3 C -0.159 4.159 4 C -0.230 4.230 5 C 0.383 3.617 6 O -0.475 6.475 7 N -0.317 5.317 8 C 0.101 3.899 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.032 3.968 18 C -0.216 4.216 19 C -0.209 4.209 20 C -0.040 4.040 21 C -0.139 4.139 22 N -0.153 5.153 23 H 0.237 0.763 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.228 0.772 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.861 -7.219 -1.849 7.681 hybrid contribution -0.862 -0.143 1.014 1.338 sum 1.000 -7.362 -0.835 7.476 Atomic orbital electron populations 1.20174 0.88649 1.02458 1.01810 1.20360 0.93224 0.86132 1.14444 1.24072 0.90094 1.01101 1.00641 1.20156 0.93966 0.91455 1.17387 1.17368 0.87183 0.81833 0.75339 1.90592 1.29800 1.72984 1.54156 1.48016 1.08355 1.05923 1.69405 1.19974 0.78663 0.94113 0.97158 1.21520 1.02200 1.38561 0.93046 0.92023 1.24899 0.97007 0.95512 0.96610 1.69945 1.14609 1.41520 1.27050 0.86563 0.79306 0.77851 0.84636 1.19709 1.21024 1.20859 1.20812 0.88769 0.92586 0.94640 1.22132 1.01500 1.00778 0.97158 1.22043 1.01348 0.98127 0.99356 1.20108 0.84591 0.94380 1.04964 1.20381 0.94960 0.95914 1.02617 1.41424 1.05272 1.08120 1.60518 0.76339 0.91926 0.93013 0.90093 0.77240 0.94793 0.92689 0.92627 0.89682 0.92011 0.92556 0.93077 0.92613 0.93417 0.90983 0.91255 0.88835 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.41 36.01 0.37 -0.73 16 2 C -0.03 -0.65 7.13 -81.87 -0.58 -1.23 16 3 C -0.14 -3.03 8.07 -37.50 -0.30 -3.33 16 4 C -0.22 -4.85 6.07 -103.35 -0.63 -5.47 16 5 C 0.59 13.83 7.58 -12.59 -0.10 13.73 16 6 O -0.59 -14.24 14.30 5.25 0.08 -14.16 16 7 N -0.59 -13.21 2.38 -168.79 -0.40 -13.61 16 8 C 0.22 5.30 3.82 -5.19 -0.02 5.28 16 9 C -0.51 -13.10 6.32 -34.44 -0.22 -13.32 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.58 4.75 -17.82 -0.08 1.49 16 12 N -0.89 -23.44 13.21 55.43 0.73 -22.70 16 13 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.14 2.67 3.21 -67.93 -0.22 2.45 16 18 C -0.16 -2.67 9.27 37.16 0.34 -2.32 16 19 C -0.15 -2.80 8.68 37.16 0.32 -2.48 16 20 C 0.08 1.42 7.17 -81.88 -0.59 0.83 16 21 C -0.08 -1.25 9.80 36.01 0.35 -0.89 16 22 N -0.56 -8.99 5.90 -5.42 -0.03 -9.02 16 23 H 0.40 4.85 8.96 -40.82 -0.37 4.48 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.21 5.15 3.03 -52.49 -0.16 4.99 16 28 H 0.03 0.85 6.45 -51.93 -0.33 0.51 16 29 H 0.06 1.40 4.77 -51.93 -0.25 1.15 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.09 1.71 6.91 -51.93 -0.36 1.36 16 32 H 0.06 1.08 6.98 -51.93 -0.36 0.72 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.45 7.07 -51.93 -0.37 1.08 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.60 6.70 -51.93 -0.35 1.25 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -29.06 319.19 -7.07 -36.13 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.89 Total: 9.18 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.34 Total: -6.00 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.30 Total: -45.34 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.06 -7.07 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.579 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds