Wall clock time and date at job start Mon Mar 30 2020 07:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47071 * 240.00241 * 3 2 1 5 5 H 1.48500 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46957 * 120.00111 * 3 2 1 7 7 C 1.37879 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99641 * 0.27853 * 7 2 1 10 10 H 1.09000 * 109.48323 * 299.69582 * 9 7 2 11 11 C 1.53097 * 109.47803 * 179.66631 * 9 7 2 12 12 C 1.53182 * 109.16035 * 297.62598 * 11 9 7 13 13 C 1.53180 * 109.03418 * 303.01679 * 12 11 9 14 14 C 1.53094 * 109.16449 * 56.98570 * 13 12 11 15 15 H 1.08992 * 109.48150 * 62.36802 * 14 13 12 16 16 C 1.53000 * 109.48018 * 182.40946 * 14 13 12 17 17 H 1.08999 * 109.47308 * 56.50076 * 16 14 13 18 18 C 1.53003 * 109.46824 * 176.50227 * 16 14 13 19 19 C 1.52997 * 109.47545 * 119.99903 * 18 16 14 20 20 C 1.53004 * 109.46975 * 59.99406 * 19 18 16 21 21 C 1.53003 * 109.47192 * 300.00161 * 20 19 18 22 22 C 1.52993 * 109.46906 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47619 * 299.99812 * 22 21 20 24 24 C 1.52996 * 109.47091 * 60.00178 * 23 22 21 25 25 O 1.42898 * 109.48275 * 59.72529 * 9 7 2 26 26 H 0.97002 * 119.99280 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.52570 * 57.52383 * 11 9 7 28 28 H 1.08994 * 109.52363 * 177.72265 * 11 9 7 29 29 H 1.09002 * 109.54287 * 183.15065 * 12 11 9 30 30 H 1.08997 * 109.61698 * 62.92729 * 12 11 9 31 31 H 1.08999 * 109.52692 * 297.07694 * 13 12 11 32 32 H 1.09003 * 109.51903 * 176.89085 * 13 12 11 33 33 H 1.09001 * 109.46575 * 239.99655 * 18 16 14 34 34 H 1.09006 * 109.47139 * 359.97438 * 18 16 14 35 35 H 1.08995 * 109.47176 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.46978 * 60.00672 * 20 19 18 37 37 H 1.08996 * 109.46703 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.46586 * 239.99927 * 21 20 19 39 39 H 1.08999 * 109.46772 * 119.99932 * 21 20 19 40 40 H 1.09009 * 109.46653 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.46781 * 300.00303 * 23 22 21 42 42 H 1.08993 * 109.47740 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47387 * 240.00669 * 24 23 22 44 44 H 1.08998 * 109.47120 * 120.00324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 -0.0052 10 1 0.6246 -2.5611 0.8847 11 6 2.2456 -3.6629 -0.0118 12 6 3.0812 -3.6030 -1.2942 13 6 2.1424 -3.6338 -2.5041 14 6 1.1517 -2.4711 -2.4014 15 1 1.6954 -1.5269 -2.4285 16 6 0.1721 -2.5302 -3.5751 17 1 -0.3270 -3.4992 -3.5835 18 6 -0.8707 -1.4207 -3.4253 19 6 -0.8023 -0.4893 -4.6373 20 6 -1.0866 -1.2880 -5.9109 21 6 -0.0437 -2.3975 -6.0607 22 6 0.9355 -2.3388 -4.8866 23 6 1.6360 -0.9787 -4.8742 24 6 0.5932 0.1307 -4.7244 25 8 0.4294 -2.5699 -1.1723 26 1 -0.4849 0.8401 0.0004 27 1 2.9023 -3.5858 0.8547 28 1 1.7020 -4.6069 0.0249 29 1 3.7531 -4.4605 -1.3320 30 1 3.6642 -2.6821 -1.3084 31 1 1.5966 -4.5772 -2.5178 32 1 2.7252 -3.5359 -3.4200 33 1 -1.8650 -1.8628 -3.3626 34 1 -0.6683 -0.8519 -2.5177 35 1 -1.5455 0.3008 -4.5307 36 1 -2.0809 -1.7301 -5.8482 37 1 -1.0374 -0.6246 -6.7743 38 1 0.5003 -2.2609 -6.9953 39 1 -0.5428 -3.3665 -6.0690 40 1 1.6782 -3.1295 -4.9931 41 1 2.1804 -0.8419 -5.8085 42 1 2.3339 -0.9370 -4.0380 43 1 0.6423 0.7945 -5.5876 44 1 0.7956 0.6994 -3.8168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691535533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:27 Heat of formation + Delta-G solvation = -84.872904 kcal Electronic energy + Delta-G solvation = -22499.761143 eV Core-core repulsion = 19607.947582 eV Total energy + Delta-G solvation = -2891.813561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25738 -37.71339 -32.85588 -32.32780 -31.64101 -30.64942 -30.40801 -28.39146 -25.47848 -23.36308 -22.30428 -22.19418 -21.29121 -20.21060 -18.91977 -16.44233 -16.05239 -15.95048 -15.32778 -15.26341 -14.60347 -13.96004 -13.80583 -13.41785 -12.95542 -12.59847 -12.34699 -11.76818 -11.72376 -11.63464 -11.59142 -11.52314 -11.46143 -11.34896 -11.06702 -10.96094 -10.84562 -10.60023 -10.26234 -10.14629 -10.00033 -9.74991 -9.53980 -9.34319 -9.24322 -8.98747 -8.57401 -8.35489 -7.64001 -5.94544 -4.08733 3.29887 3.35673 3.38148 4.42706 4.86705 5.01551 5.05898 5.25510 5.48784 5.62692 5.64042 5.72038 5.78475 5.79280 5.80765 5.84713 5.86515 5.97103 6.04128 6.06817 6.12755 6.25215 6.29055 6.36845 6.40619 6.48686 6.53817 6.57299 6.59259 6.69885 6.76118 6.81128 6.85333 6.91920 6.99231 7.07054 7.12540 7.15901 7.36843 7.48994 7.76542 7.92742 8.28194 8.88825 9.19348 9.62812 11.09177 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.009648 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.237721 B = 2901.516737 C = 3707.210847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.084 3.916 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.213 3.787 10 H 0.057 0.943 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.145 4.145 14 C 0.111 3.889 15 H 0.067 0.933 16 C -0.068 4.068 17 H 0.058 0.942 18 C -0.108 4.108 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.110 4.110 25 O -0.369 6.369 26 H 0.259 0.741 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -3.296 -10.214 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.122 4.122 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.072 0.928 9 C 0.157 3.843 10 H 0.075 0.925 11 C -0.180 4.180 12 C -0.146 4.146 13 C -0.183 4.183 14 C 0.053 3.947 15 H 0.085 0.915 16 C -0.086 4.086 17 H 0.077 0.923 18 C -0.145 4.145 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.097 4.097 23 C -0.152 4.152 24 C -0.148 4.148 25 O -0.288 6.288 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.260 -3.211 -10.199 10.696 hybrid contribution 0.857 0.951 0.014 1.280 sum 1.117 -2.260 -10.185 10.492 Atomic orbital electron populations 1.70038 1.05597 1.26166 1.47404 1.24952 0.94611 0.98490 0.94157 0.86949 0.80014 0.84056 0.78723 1.20163 1.21232 1.20315 1.21487 0.92952 0.91228 1.53619 0.92822 1.19647 0.88484 0.90728 0.85393 0.92492 1.22180 0.99294 0.99747 0.96755 1.21429 0.97371 1.00419 0.95340 1.22227 0.98582 1.00050 0.97464 1.21636 0.91108 0.96456 0.85532 0.91508 1.21027 0.96113 0.98594 0.92900 0.92341 1.21572 0.97550 0.96666 0.98730 1.21041 0.96601 0.97489 0.95309 1.21535 0.98454 0.97308 0.97556 1.21502 0.97073 0.98487 0.97638 1.21018 0.96831 0.97248 0.94645 1.21560 0.97894 0.94566 1.01156 1.21468 0.94827 0.97347 1.01139 1.87875 1.34820 1.93428 1.12633 0.93122 0.92853 0.94248 0.94482 0.91545 0.93111 0.92918 0.93375 0.88108 0.92063 0.92548 0.92928 0.92697 0.92504 0.91571 0.93055 0.91209 0.93160 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.90 12.79 55.43 0.71 -23.19 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -14.72 6.60 -34.44 -0.23 -14.95 16 8 H 0.05 1.42 6.87 -52.49 -0.36 1.06 16 9 C 0.21 5.37 3.16 -27.83 -0.09 5.28 16 10 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 11 C -0.14 -3.02 5.59 -26.59 -0.15 -3.17 16 12 C -0.11 -2.10 5.77 -26.54 -0.15 -2.26 16 13 C -0.15 -2.74 5.07 -26.59 -0.13 -2.87 16 14 C 0.11 2.35 1.49 -26.68 -0.04 2.31 16 15 H 0.07 1.59 5.19 -51.93 -0.27 1.32 16 16 C -0.07 -1.25 2.01 -90.64 -0.18 -1.43 16 17 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.11 -2.06 5.10 -26.73 -0.14 -2.20 16 19 C -0.09 -1.39 3.19 -90.64 -0.29 -1.68 16 20 C -0.11 -1.52 5.71 -26.73 -0.15 -1.68 16 21 C -0.11 -1.47 5.71 -26.73 -0.15 -1.62 16 22 C -0.08 -1.22 2.45 -90.65 -0.22 -1.44 16 23 C -0.11 -1.82 5.36 -26.73 -0.14 -1.96 16 24 C -0.11 -1.81 5.71 -26.76 -0.15 -1.96 16 25 O -0.37 -9.17 8.81 -35.23 -0.31 -9.48 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.37 6.86 -51.93 -0.36 1.02 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.89 6.65 -51.93 -0.35 0.54 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.36 7.14 -51.93 -0.37 1.98 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.98 6.58 -51.92 -0.34 0.64 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.24 6.35 -51.93 -0.33 0.91 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -27.12 316.87 -10.02 -37.13 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.85 Total: 2.48 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -2.32 Total: -27.48 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.71 Total: -23.19 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.31 Total: -9.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.12 -10.02 -37.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.741 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds