Wall clock time and date at job start Mon Mar 30 2020 07:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.48414 * 300.25630 * 9 7 2 11 11 C 1.53097 * 109.48202 * 180.21974 * 9 7 2 12 12 C 1.53173 * 109.16362 * 182.41095 * 11 9 7 13 13 C 1.53178 * 109.03475 * 56.98552 * 12 11 9 14 14 C 1.53092 * 109.16211 * 303.01470 * 13 12 11 15 15 H 1.08997 * 109.48029 * 297.62713 * 14 13 12 16 16 C 1.53000 * 109.48016 * 177.59325 * 14 13 12 17 17 H 1.08996 * 109.47064 * 300.06128 * 16 14 13 18 18 C 1.53006 * 109.47104 * 60.06147 * 16 14 13 19 19 C 1.53000 * 109.47346 * 119.99807 * 18 16 14 20 20 C 1.52997 * 109.47103 * 300.00171 * 19 18 16 21 21 C 1.52992 * 109.47234 * 59.99792 * 20 19 18 22 22 C 1.52999 * 109.47347 * 0.02562 * 21 20 19 23 23 C 1.52992 * 109.47059 * 59.99847 * 22 21 20 24 24 C 1.53001 * 109.47368 * 299.99881 * 23 22 21 25 25 O 1.42904 * 109.41428 * 57.61210 * 14 13 12 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52218 * 302.32032 * 11 9 7 28 28 H 1.08999 * 109.52046 * 62.50533 * 11 9 7 29 29 H 1.08998 * 109.54568 * 297.11333 * 12 11 9 30 30 H 1.09003 * 109.61199 * 176.89296 * 12 11 9 31 31 H 1.09005 * 109.51876 * 183.11590 * 13 12 11 32 32 H 1.08994 * 109.57955 * 62.95627 * 13 12 11 33 33 H 1.09007 * 109.46808 * 240.00278 * 18 16 14 34 34 H 1.09002 * 109.46938 * 359.97438 * 18 16 14 35 35 H 1.08999 * 109.47023 * 180.02562 * 19 18 16 36 36 H 1.09008 * 109.47169 * 299.99684 * 20 19 18 37 37 H 1.09003 * 109.46894 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47421 * 239.99668 * 21 20 19 39 39 H 1.09007 * 109.47175 * 120.00399 * 21 20 19 40 40 H 1.09005 * 109.47146 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47476 * 60.00156 * 23 22 21 42 42 H 1.09004 * 109.47172 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47774 * 240.00497 * 24 23 22 44 44 H 1.09003 * 109.47202 * 119.99614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6248 -2.5532 0.8958 11 6 2.2458 -3.6629 0.0090 12 6 1.4736 -4.9845 -0.0459 13 6 0.5784 -4.9889 -1.2888 14 6 -0.3519 -3.7739 -1.2424 15 1 -0.9992 -3.8450 -0.3683 16 6 -1.2079 -3.7380 -2.5100 17 1 -0.5603 -3.6675 -3.3838 18 6 -2.0444 -5.0162 -2.5969 19 6 -3.5307 -4.6532 -2.6088 20 6 -3.8821 -3.9001 -1.3242 21 6 -3.0457 -2.6220 -1.2373 22 6 -2.1370 -2.5227 -2.4643 23 6 -2.9935 -2.4865 -3.7315 24 6 -3.8299 -3.7647 -3.8185 25 8 0.4295 -2.5802 -1.1610 26 1 -0.4850 0.8400 0.0004 27 1 2.8992 -3.5863 -0.8602 28 1 2.8439 -3.6280 0.9196 29 1 0.8574 -5.0842 0.8477 30 1 2.1757 -5.8166 -0.0992 31 1 -0.0161 -5.9024 -1.3063 32 1 1.1972 -4.9398 -2.1848 33 1 -1.7940 -5.5528 -3.5121 34 1 -1.8315 -5.6490 -1.7353 35 1 -4.1266 -5.5638 -2.6702 36 1 -3.6695 -4.5328 -0.4623 37 1 -4.9411 -3.6419 -1.3325 38 1 -2.4358 -2.6475 -0.3342 39 1 -3.7072 -1.7563 -1.2045 40 1 -1.5408 -1.6123 -2.4021 41 1 -3.6551 -1.6209 -3.6983 42 1 -2.3462 -2.4162 -4.6057 43 1 -3.5799 -4.3010 -4.7338 44 1 -4.8888 -3.5061 -3.8265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691535543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:34 Heat of formation + Delta-G solvation = -86.211655 kcal Electronic energy + Delta-G solvation = -22011.171600 eV Core-core repulsion = 19119.299986 eV Total energy + Delta-G solvation = -2891.871614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29401 -37.69046 -33.12588 -32.43658 -31.58659 -30.82746 -30.43629 -28.55312 -25.42356 -23.55629 -22.30650 -22.12892 -21.14162 -20.27672 -19.20442 -16.57472 -16.10646 -15.95430 -15.43389 -15.32052 -14.55539 -14.33026 -14.00608 -13.48766 -12.93637 -12.60123 -12.43798 -11.94407 -11.78107 -11.67889 -11.65163 -11.51109 -11.49110 -11.38911 -11.20200 -10.91882 -10.83739 -10.49481 -10.35317 -10.17554 -10.15712 -9.75789 -9.73475 -9.33445 -9.27490 -9.03929 -8.75291 -8.41401 -7.74171 -5.95896 -4.07309 3.33509 3.40003 3.42617 4.45523 4.83123 4.90448 5.02485 5.15303 5.42858 5.52480 5.62625 5.66032 5.67366 5.70427 5.75260 5.78514 5.82591 5.83436 5.91903 5.96747 6.09436 6.11123 6.17203 6.24886 6.28742 6.37624 6.41310 6.47200 6.53580 6.59457 6.63513 6.70160 6.80034 6.89497 6.91739 6.93085 6.97117 7.02743 7.13865 7.25936 7.58709 7.94738 8.35781 8.85512 9.23840 9.62376 11.11145 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.007370 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.995620 B = 3798.099394 C = 4721.599242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.222 3.778 10 H 0.010 0.990 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.147 4.147 14 C 0.092 3.908 15 H 0.042 0.958 16 C -0.066 4.066 17 H 0.065 0.935 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.110 4.110 25 O -0.350 6.350 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 -9.058 -4.605 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.166 3.834 10 H 0.028 0.972 11 C -0.182 4.182 12 C -0.158 4.158 13 C -0.185 4.185 14 C 0.033 3.967 15 H 0.059 0.941 16 C -0.085 4.085 17 H 0.084 0.916 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.150 4.150 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.152 4.152 24 C -0.148 4.148 25 O -0.269 6.269 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.894 -8.799 -4.736 12.140 hybrid contribution 0.492 0.621 0.158 0.808 sum -6.402 -8.178 -4.578 11.350 Atomic orbital electron populations 1.70031 1.05802 1.26217 1.47148 1.25023 0.94783 0.98967 0.93837 0.86685 0.79990 0.83631 0.78162 1.20583 1.21226 1.19888 1.20983 0.92585 0.89799 1.52971 0.92070 1.19630 0.87002 0.91789 0.84995 0.97190 1.22259 0.99664 0.95447 1.00815 1.21605 0.98323 0.98231 0.97608 1.22254 0.98815 0.99002 0.98458 1.21887 0.91753 0.87118 0.95944 0.94061 1.21019 0.95447 0.94118 0.97907 0.91625 1.21647 0.94256 0.97416 1.01226 1.21010 0.96371 0.97484 0.95365 1.21564 0.99090 0.97541 0.96815 1.21464 0.97691 0.96008 0.99390 1.20907 0.95440 0.99566 0.93185 1.21569 0.98242 0.96874 0.98484 1.21535 0.99229 0.96661 0.97365 1.88321 1.57522 1.35433 1.45594 0.93158 0.92658 0.92759 0.92924 0.93457 0.92695 0.92161 0.92595 0.91879 0.92160 0.92654 0.92904 0.90887 0.92895 0.89000 0.92571 0.92573 0.92707 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.61 12.84 55.43 0.71 -23.90 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.79 8.79 -34.44 -0.30 -15.09 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.22 5.71 2.50 -27.83 -0.07 5.64 16 10 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 11 C -0.14 -3.11 5.36 -26.59 -0.14 -3.25 16 12 C -0.12 -2.19 6.03 -26.55 -0.16 -2.35 16 13 C -0.15 -2.62 5.10 -26.59 -0.14 -2.75 16 14 C 0.09 1.85 1.70 -26.68 -0.05 1.80 16 15 H 0.04 0.87 6.43 -51.93 -0.33 0.54 16 16 C -0.07 -1.16 2.02 -90.59 -0.18 -1.34 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.11 -1.54 4.86 -26.73 -0.13 -1.67 16 19 C -0.08 -1.11 3.20 -90.59 -0.29 -1.40 16 20 C -0.11 -1.60 5.71 -26.74 -0.15 -1.76 16 21 C -0.11 -1.88 5.35 -26.74 -0.14 -2.02 16 22 C -0.07 -1.31 2.58 -90.60 -0.23 -1.54 16 23 C -0.11 -1.71 5.71 -26.73 -0.15 -1.86 16 24 C -0.11 -1.42 5.71 -26.70 -0.15 -1.57 16 25 O -0.35 -8.80 8.77 -35.23 -0.31 -9.11 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.47 6.43 -51.93 -0.33 1.14 16 39 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.09 2.04 7.68 -51.93 -0.40 1.64 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -28.47 322.08 -10.19 -38.65 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.03 Total: 0.16 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.39 Total: -27.01 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.71 Total: -23.90 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.31 Total: -9.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.47 -10.19 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.558 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds