Wall clock time and date at job start Mon Mar 30 2020 07:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.48414 * 300.25630 * 9 7 2 11 11 C 1.53097 * 109.48202 * 180.21974 * 9 7 2 12 12 C 1.53173 * 109.16362 * 182.41095 * 11 9 7 13 13 C 1.53178 * 109.03475 * 56.98552 * 12 11 9 14 14 C 1.53092 * 109.16211 * 303.01470 * 13 12 11 15 15 H 1.08997 * 109.48029 * 297.62713 * 14 13 12 16 16 C 1.53000 * 109.48016 * 177.59325 * 14 13 12 17 17 H 1.08996 * 109.47064 * 300.06128 * 16 14 13 18 18 C 1.53006 * 109.47104 * 60.06147 * 16 14 13 19 19 C 1.53000 * 109.47346 * 119.99807 * 18 16 14 20 20 C 1.52997 * 109.47103 * 300.00171 * 19 18 16 21 21 C 1.52992 * 109.47234 * 59.99792 * 20 19 18 22 22 C 1.52999 * 109.47347 * 0.02562 * 21 20 19 23 23 C 1.52992 * 109.47059 * 59.99847 * 22 21 20 24 24 C 1.53001 * 109.47368 * 299.99881 * 23 22 21 25 25 O 1.42904 * 109.41428 * 57.61210 * 14 13 12 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52218 * 302.32032 * 11 9 7 28 28 H 1.08999 * 109.52046 * 62.50533 * 11 9 7 29 29 H 1.08998 * 109.54568 * 297.11333 * 12 11 9 30 30 H 1.09003 * 109.61199 * 176.89296 * 12 11 9 31 31 H 1.09005 * 109.51876 * 183.11590 * 13 12 11 32 32 H 1.08994 * 109.57955 * 62.95627 * 13 12 11 33 33 H 1.09007 * 109.46808 * 240.00278 * 18 16 14 34 34 H 1.09002 * 109.46938 * 359.97438 * 18 16 14 35 35 H 1.08999 * 109.47023 * 180.02562 * 19 18 16 36 36 H 1.09008 * 109.47169 * 299.99684 * 20 19 18 37 37 H 1.09003 * 109.46894 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47421 * 239.99668 * 21 20 19 39 39 H 1.09007 * 109.47175 * 120.00399 * 21 20 19 40 40 H 1.09005 * 109.47146 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47476 * 60.00156 * 23 22 21 42 42 H 1.09004 * 109.47172 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47774 * 240.00497 * 24 23 22 44 44 H 1.09003 * 109.47202 * 119.99614 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6248 -2.5532 0.8958 11 6 2.2458 -3.6629 0.0090 12 6 1.4736 -4.9845 -0.0459 13 6 0.5784 -4.9889 -1.2888 14 6 -0.3519 -3.7739 -1.2424 15 1 -0.9992 -3.8450 -0.3683 16 6 -1.2079 -3.7380 -2.5100 17 1 -0.5603 -3.6675 -3.3838 18 6 -2.0444 -5.0162 -2.5969 19 6 -3.5307 -4.6532 -2.6088 20 6 -3.8821 -3.9001 -1.3242 21 6 -3.0457 -2.6220 -1.2373 22 6 -2.1370 -2.5227 -2.4643 23 6 -2.9935 -2.4865 -3.7315 24 6 -3.8299 -3.7647 -3.8185 25 8 0.4295 -2.5802 -1.1610 26 1 -0.4850 0.8400 0.0004 27 1 2.8992 -3.5863 -0.8602 28 1 2.8439 -3.6280 0.9196 29 1 0.8574 -5.0842 0.8477 30 1 2.1757 -5.8166 -0.0992 31 1 -0.0161 -5.9024 -1.3063 32 1 1.1972 -4.9398 -2.1848 33 1 -1.7940 -5.5528 -3.5121 34 1 -1.8315 -5.6490 -1.7353 35 1 -4.1266 -5.5638 -2.6702 36 1 -3.6695 -4.5328 -0.4623 37 1 -4.9411 -3.6419 -1.3325 38 1 -2.4358 -2.6475 -0.3342 39 1 -3.7072 -1.7563 -1.2045 40 1 -1.5408 -1.6123 -2.4021 41 1 -3.6551 -1.6209 -3.6983 42 1 -2.3462 -2.4162 -4.6057 43 1 -3.5799 -4.3010 -4.7338 44 1 -4.8888 -3.5061 -3.8265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691535543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:34 Heat of formation + Delta-G solvation = -100.541153 kcal Electronic energy + Delta-G solvation = -22011.792974 eV Core-core repulsion = 19119.299986 eV Total energy + Delta-G solvation = -2892.492987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62702 -39.37444 -35.04753 -34.11736 -33.32606 -32.09126 -31.66657 -30.21440 -27.32118 -25.08013 -23.97579 -23.36388 -22.54408 -21.75004 -20.87573 -18.64411 -17.42918 -17.28682 -17.00034 -16.58651 -16.50410 -16.12340 -15.41907 -15.08600 -14.71230 -14.25182 -13.88697 -13.55384 -13.16679 -12.94774 -12.87911 -12.86645 -12.83141 -12.79084 -12.73058 -12.61524 -12.55549 -12.31188 -12.09430 -11.74504 -11.63661 -11.48878 -11.18054 -10.84517 -10.68103 -10.56314 -10.54247 -10.32266 -9.59157 -8.11488 -6.31663 1.38510 1.40054 1.50038 2.40390 3.04756 3.54355 3.68988 3.81914 3.94455 4.09186 4.15726 4.19766 4.36904 4.41202 4.50341 4.51724 4.53628 4.56236 4.61741 4.64265 4.67827 4.71185 4.78491 4.85510 4.93950 4.98047 5.05157 5.13502 5.17175 5.23504 5.25606 5.29316 5.34525 5.38511 5.47486 5.51236 5.54713 5.57049 5.61267 5.71005 5.79465 5.81313 6.25288 6.70166 7.30729 7.44887 8.94849 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.007370 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.995620 B = 3798.099394 C = 4721.599242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.028 3.972 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.220 3.780 10 H -0.029 1.029 11 C -0.138 4.138 12 C -0.116 4.116 13 C -0.141 4.141 14 C 0.085 3.915 15 H 0.024 0.976 16 C -0.063 4.063 17 H 0.055 0.945 18 C -0.102 4.102 19 C -0.081 4.081 20 C -0.107 4.107 21 C -0.104 4.104 22 C -0.073 4.073 23 C -0.111 4.111 24 C -0.105 4.105 25 O -0.380 6.380 26 H 0.258 0.742 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -11.330 -5.931 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.078 0.922 9 C 0.164 3.836 10 H -0.011 1.011 11 C -0.176 4.176 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.027 3.973 15 H 0.041 0.959 16 C -0.081 4.081 17 H 0.074 0.926 18 C -0.139 4.139 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.142 4.142 25 O -0.299 6.299 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.673 -11.085 -6.059 14.781 hybrid contribution 0.733 1.373 0.610 1.672 sum -6.941 -9.712 -5.449 13.122 Atomic orbital electron populations 1.70183 1.07274 1.26926 1.47860 1.25862 0.95667 1.02580 0.93394 0.85618 0.78976 0.79155 0.78202 1.20336 1.20543 1.18786 1.21395 0.92856 0.91500 1.53401 0.92189 1.19443 0.87290 0.92968 0.83853 1.01108 1.22119 0.98848 0.95904 1.00720 1.21595 0.98715 0.97094 0.97930 1.22203 0.98516 0.98932 0.98157 1.22152 0.91920 0.86566 0.96705 0.95855 1.21022 0.95286 0.95988 0.95850 0.92648 1.21643 0.94405 0.95230 1.02672 1.21061 0.95847 0.98621 0.94398 1.21541 0.99320 0.95540 0.98061 1.21369 0.97385 0.98179 0.97236 1.20792 0.95626 0.97368 0.95349 1.21528 0.98100 0.98861 0.96349 1.21531 0.99588 0.94996 0.98094 1.88223 1.58306 1.38641 1.44746 0.93275 0.93121 0.92400 0.92896 0.89999 0.89132 0.92150 0.90183 0.91333 0.88753 0.92444 0.90933 0.95112 0.93624 0.95047 0.92657 0.92561 0.90694 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.01 12.84 21.45 0.28 -53.74 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.55 -32.61 8.79 25.60 0.23 -32.38 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.22 12.00 2.50 29.88 0.07 12.08 16 10 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 11 C -0.14 -6.06 5.36 30.68 0.16 -5.89 16 12 C -0.12 -4.06 6.03 30.71 0.19 -3.88 16 13 C -0.14 -4.78 5.10 30.68 0.16 -4.62 16 14 C 0.08 3.51 1.70 30.62 0.05 3.56 16 15 H 0.02 1.05 6.43 -2.39 -0.02 1.03 16 16 C -0.06 -2.20 2.02 -10.77 -0.02 -2.23 16 17 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 18 C -0.10 -2.60 4.86 30.60 0.15 -2.45 16 19 C -0.08 -1.83 3.20 -10.78 -0.03 -1.86 16 20 C -0.11 -2.86 5.71 30.59 0.17 -2.69 16 21 C -0.10 -3.78 5.35 30.59 0.16 -3.62 16 22 C -0.07 -2.74 2.58 -10.78 -0.03 -2.76 16 23 C -0.11 -3.24 5.71 30.59 0.17 -3.06 16 24 C -0.10 -2.30 5.71 30.61 0.17 -2.13 16 25 O -0.38 -20.27 8.77 -148.98 -1.31 -21.58 16 26 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.46 6.52 -2.38 -0.02 2.44 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.69 6.20 -2.39 -0.01 1.67 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.03 1.34 6.43 -2.38 -0.02 1.33 16 39 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.03 1.52 7.68 -2.38 -0.02 1.51 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.81 322.08 4.00 -62.81 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.94 Total: 15.00 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 2.07 Total: -49.84 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.28 Total: -53.74 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.31 Total: -21.58 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.81 4.00 -62.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.732 kcal (2) G-P(sol) polarization free energy of solvation -66.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds