Wall clock time and date at job start Mon Mar 30 2020 07:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.99247 * 2 1 4 4 H 1.07994 * 119.99834 * 267.40271 * 3 2 1 5 5 C 1.37874 * 119.99603 * 87.39901 * 3 2 1 6 6 N 1.31518 * 119.99415 * 174.26905 * 5 3 2 7 7 Si 1.86797 * 120.00666 * 354.26965 * 5 3 2 8 8 H 1.48505 * 109.47025 * 86.73029 * 7 5 3 9 9 H 1.48492 * 109.47226 * 206.72987 * 7 5 3 10 10 H 1.48504 * 109.46944 * 326.73382 * 7 5 3 11 11 C 1.54099 * 109.87886 * 238.91376 * 2 1 3 12 12 C 1.54801 * 104.18964 * 242.60685 * 11 2 1 13 13 C 1.54994 * 102.09405 * 20.88111 * 12 11 2 14 14 H 1.08997 * 110.61664 * 81.47476 * 13 12 11 15 15 C 1.53001 * 110.61942 * 204.47556 * 13 12 11 16 16 H 1.09005 * 109.47300 * 55.52423 * 15 13 12 17 17 C 1.52998 * 109.47062 * 295.52463 * 15 13 12 18 18 C 1.53005 * 109.46786 * 239.99896 * 17 15 13 19 19 C 1.52997 * 109.47385 * 60.00168 * 18 17 15 20 20 C 1.53004 * 109.46722 * 300.00071 * 19 18 17 21 21 C 1.52996 * 109.47157 * 175.52039 * 15 13 12 22 22 C 1.53001 * 109.47157 * 180.02562 * 21 15 13 23 23 C 1.53000 * 109.47390 * 299.99743 * 18 17 15 24 24 O 1.43750 * 109.87985 * 121.08467 * 2 1 3 25 25 H 1.09005 * 109.46823 * 304.91679 * 1 2 3 26 26 H 1.09003 * 109.46866 * 64.91025 * 1 2 3 27 27 H 1.08990 * 109.46944 * 184.91533 * 1 2 3 28 28 H 0.97001 * 119.99728 * 180.02562 * 6 5 3 29 29 H 1.08998 * 110.48920 * 1.28465 * 11 2 1 30 30 H 1.08999 * 110.48654 * 123.79454 * 11 2 1 31 31 H 1.09002 * 110.90933 * 262.68338 * 12 11 2 32 32 H 1.09004 * 110.91218 * 139.08109 * 12 11 2 33 33 H 1.08997 * 109.47406 * 359.97438 * 17 15 13 34 34 H 1.09000 * 109.47287 * 120.00054 * 17 15 13 35 35 H 1.09011 * 109.46607 * 179.97438 * 18 17 15 36 36 H 1.08990 * 109.47166 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47270 * 59.99312 * 19 18 17 38 38 H 1.09000 * 109.46743 * 239.99634 * 20 19 18 39 39 H 1.09000 * 109.47155 * 119.99812 * 20 19 18 40 40 H 1.09002 * 109.47824 * 300.00049 * 21 15 13 41 41 H 1.08997 * 109.46956 * 60.00260 * 22 21 15 42 42 H 1.09000 * 109.47068 * 180.02562 * 22 21 15 43 43 H 1.08997 * 109.47467 * 179.97438 * 23 18 17 44 44 H 1.09000 * 109.47245 * 300.00186 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4162 0.0000 4 1 2.2697 1.9091 -0.9343 5 6 2.2300 2.0825 1.1928 6 7 2.7846 3.2750 1.2008 7 14 1.6927 1.2917 2.7976 8 1 2.7860 0.4304 3.3155 9 1 1.3832 2.3503 3.7919 10 1 0.4816 0.4654 2.5610 11 6 2.0540 -0.7482 -1.2411 12 6 2.8324 -1.9524 -0.6576 13 6 2.2280 -2.0714 0.7647 14 1 1.2813 -2.6107 0.7355 15 6 3.2126 -2.7590 1.7127 16 1 4.1599 -2.2198 1.7065 17 6 3.4428 -4.1996 1.2518 18 6 3.0210 -5.1639 2.3623 19 6 1.5379 -4.9604 2.6784 20 6 1.3078 -3.5197 3.1393 21 6 2.6374 -2.7628 3.1304 22 6 3.6223 -3.4498 4.0786 23 6 3.8521 -4.8911 3.6176 24 8 2.0188 -0.6980 1.1577 25 1 -0.3633 0.5883 0.8427 26 1 -0.3633 0.4358 -0.9307 27 1 -0.3633 -1.0238 0.0880 28 1 2.9150 3.7436 2.0400 29 1 1.2238 -1.0931 -1.8574 30 1 2.7178 -0.1071 -1.8210 31 1 3.9003 -1.7391 -0.6098 32 1 2.6432 -2.8558 -1.2374 33 1 2.8504 -4.3941 0.3578 34 1 4.4994 -4.3446 1.0266 35 1 3.1846 -6.1903 2.0337 36 1 1.2374 -5.6476 3.4692 37 1 0.9458 -5.1547 1.7841 38 1 0.8980 -3.5224 4.1493 39 1 0.6064 -3.0298 2.4639 40 1 2.4734 -1.7365 3.4589 41 1 4.5693 -2.9102 4.0722 42 1 3.2123 -3.4529 5.0885 43 1 3.5513 -5.5777 4.4089 44 1 4.9087 -5.0361 3.3924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691535985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:25 Heat of formation + Delta-G solvation = -75.758438 kcal Electronic energy + Delta-G solvation = -22262.248720 eV Core-core repulsion = 19370.830392 eV Total energy + Delta-G solvation = -2891.418328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57922 -38.40700 -33.13114 -31.75731 -31.53199 -30.90701 -30.72298 -29.16050 -25.53611 -24.38135 -22.50026 -22.39845 -21.45102 -20.18257 -19.22064 -17.09069 -16.40485 -16.24167 -15.90844 -15.58083 -14.63641 -14.39824 -13.60542 -13.24283 -12.99970 -12.54926 -12.50997 -12.19280 -11.95959 -11.95051 -11.91403 -11.87295 -11.82335 -11.76805 -11.36011 -11.16939 -10.89365 -10.73926 -10.29151 -10.23878 -10.03581 -9.84838 -9.73120 -9.59475 -9.47994 -9.25723 -8.93053 -8.59903 -8.16977 -5.98957 -4.06680 3.49181 3.63696 3.75212 4.53841 4.66378 4.67996 4.80314 4.98699 5.24657 5.37014 5.41578 5.42085 5.46954 5.48033 5.49535 5.54664 5.60595 5.64921 5.71792 5.74367 5.83315 5.96721 6.04446 6.07340 6.16718 6.22203 6.27806 6.33629 6.35993 6.43590 6.44410 6.48522 6.56862 6.61185 6.63138 6.68987 6.74472 6.79358 6.89451 6.97088 7.44610 7.73913 8.19535 8.54444 8.96859 9.66088 11.10727 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.008048 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.299354 B = 3478.337063 C = 3960.379909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.196 3.804 3 C -0.518 4.518 4 H 0.078 0.922 5 C 0.080 3.920 6 N -0.901 5.901 7 Si 0.922 3.078 8 H -0.277 1.277 9 H -0.319 1.319 10 H -0.260 1.260 11 C -0.133 4.133 12 C -0.144 4.144 13 C 0.081 3.919 14 H 0.057 0.943 15 C -0.072 4.072 16 H 0.075 0.925 17 C -0.106 4.106 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.084 4.084 22 C -0.114 4.114 23 C -0.111 4.111 24 O -0.366 6.366 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -17.545 2.397 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.157 3.843 3 C -0.555 4.555 4 H 0.096 0.904 5 C -0.123 4.123 6 N -0.538 5.538 7 Si 0.755 3.245 8 H -0.204 1.204 9 H -0.250 1.250 10 H -0.186 1.186 11 C -0.171 4.171 12 C -0.182 4.182 13 C 0.024 3.976 14 H 0.075 0.925 15 C -0.091 4.091 16 H 0.093 0.907 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.102 4.102 22 C -0.152 4.152 23 C -0.148 4.148 24 O -0.288 6.288 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.286 -17.301 2.683 17.510 hybrid contribution -0.247 -0.292 0.620 0.728 sum -0.533 -17.594 3.303 17.909 Atomic orbital electron populations 1.22435 0.98607 0.98477 1.01443 1.20101 0.90049 0.92607 0.81500 1.20920 1.45567 0.94156 0.94845 0.90360 1.25005 0.93170 0.94107 1.00018 1.69968 1.42705 1.13830 1.27271 0.86069 0.80470 0.76652 0.81278 1.20411 1.24960 1.18584 1.22958 0.98960 0.96089 0.99117 1.23077 1.00752 0.97944 0.96421 1.23079 0.96054 0.85989 0.92478 0.92533 1.21118 0.98970 0.94798 0.94214 0.90699 1.21572 1.00934 0.94145 0.97669 1.21019 0.95284 0.98455 0.95564 1.21526 0.95759 0.96970 1.00584 1.21562 0.97589 0.95134 1.01006 1.21053 0.94414 0.99910 0.94820 1.21557 0.99489 0.95524 0.98583 1.21538 0.99384 0.96852 0.97063 1.88527 1.86365 1.18347 1.35521 0.92675 0.93023 0.95720 0.92824 0.92989 0.90926 0.91171 0.92124 0.91750 0.92068 0.91701 0.92540 0.92323 0.92558 0.91499 0.90200 0.92124 0.92408 0.92513 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.24 37.16 0.31 -3.00 16 2 C 0.20 4.62 0.69 -91.19 -0.06 4.55 16 3 C -0.52 -14.75 8.65 -34.44 -0.30 -15.05 16 4 H 0.08 2.39 7.91 -52.49 -0.42 1.97 16 5 C 0.08 2.39 5.46 -17.82 -0.10 2.29 16 6 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 7 Si 0.92 24.30 24.05 -169.99 -4.09 20.21 16 8 H -0.28 -7.27 6.40 56.52 0.36 -6.91 16 9 H -0.32 -8.52 7.11 56.52 0.40 -8.12 16 10 H -0.26 -6.59 5.46 56.52 0.31 -6.28 16 11 C -0.13 -2.67 6.26 -25.21 -0.16 -2.83 16 12 C -0.14 -2.50 5.92 -24.73 -0.15 -2.65 16 13 C 0.08 1.49 2.09 -25.68 -0.05 1.43 16 14 H 0.06 1.00 6.50 -51.93 -0.34 0.66 16 15 C -0.07 -1.17 2.00 -90.62 -0.18 -1.35 16 16 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 17 C -0.11 -1.35 5.03 -26.73 -0.13 -1.48 16 18 C -0.08 -0.97 3.19 -90.62 -0.29 -1.26 16 19 C -0.11 -1.31 5.71 -26.73 -0.15 -1.46 16 20 C -0.12 -1.65 5.37 -26.73 -0.14 -1.79 16 21 C -0.08 -1.34 2.60 -90.62 -0.24 -1.58 16 22 C -0.11 -1.54 5.71 -26.70 -0.15 -1.69 16 23 C -0.11 -1.26 5.71 -26.70 -0.15 -1.41 16 24 O -0.37 -8.50 5.40 -35.23 -0.19 -8.69 16 25 H 0.05 1.28 6.00 -51.93 -0.31 0.97 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 30 H 0.07 1.52 7.59 -51.93 -0.39 1.13 16 31 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 32 H 0.06 0.88 7.73 -51.93 -0.40 0.48 16 33 H 0.06 0.79 6.92 -51.93 -0.36 0.43 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.05 6.48 -51.93 -0.34 0.71 16 40 H 0.08 1.56 6.71 -51.93 -0.35 1.21 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -30.71 312.48 -8.80 -39.51 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.06 Total: -0.99 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -1.95 Total: -27.27 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.19 Total: -8.69 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.09 Total: 20.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.71 -8.80 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.246 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds