Wall clock time and date at job start Mon Mar 30 2020 07:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.99247 * 2 1 4 4 H 1.07994 * 119.99834 * 267.40271 * 3 2 1 5 5 C 1.37874 * 119.99603 * 87.39901 * 3 2 1 6 6 N 1.31518 * 119.99415 * 174.26905 * 5 3 2 7 7 Si 1.86797 * 120.00666 * 354.26965 * 5 3 2 8 8 H 1.48505 * 109.47025 * 86.73029 * 7 5 3 9 9 H 1.48492 * 109.47226 * 206.72987 * 7 5 3 10 10 H 1.48504 * 109.46944 * 326.73382 * 7 5 3 11 11 C 1.54099 * 109.87886 * 238.91376 * 2 1 3 12 12 C 1.54801 * 104.18964 * 242.60685 * 11 2 1 13 13 C 1.54994 * 102.09405 * 20.88111 * 12 11 2 14 14 H 1.08997 * 110.61664 * 81.47476 * 13 12 11 15 15 C 1.53001 * 110.61942 * 204.47556 * 13 12 11 16 16 H 1.09005 * 109.47300 * 55.52423 * 15 13 12 17 17 C 1.52998 * 109.47062 * 295.52463 * 15 13 12 18 18 C 1.53005 * 109.46786 * 239.99896 * 17 15 13 19 19 C 1.52997 * 109.47385 * 60.00168 * 18 17 15 20 20 C 1.53004 * 109.46722 * 300.00071 * 19 18 17 21 21 C 1.52996 * 109.47157 * 175.52039 * 15 13 12 22 22 C 1.53001 * 109.47157 * 180.02562 * 21 15 13 23 23 C 1.53000 * 109.47390 * 299.99743 * 18 17 15 24 24 O 1.43750 * 109.87985 * 121.08467 * 2 1 3 25 25 H 1.09005 * 109.46823 * 304.91679 * 1 2 3 26 26 H 1.09003 * 109.46866 * 64.91025 * 1 2 3 27 27 H 1.08990 * 109.46944 * 184.91533 * 1 2 3 28 28 H 0.97001 * 119.99728 * 180.02562 * 6 5 3 29 29 H 1.08998 * 110.48920 * 1.28465 * 11 2 1 30 30 H 1.08999 * 110.48654 * 123.79454 * 11 2 1 31 31 H 1.09002 * 110.90933 * 262.68338 * 12 11 2 32 32 H 1.09004 * 110.91218 * 139.08109 * 12 11 2 33 33 H 1.08997 * 109.47406 * 359.97438 * 17 15 13 34 34 H 1.09000 * 109.47287 * 120.00054 * 17 15 13 35 35 H 1.09011 * 109.46607 * 179.97438 * 18 17 15 36 36 H 1.08990 * 109.47166 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47270 * 59.99312 * 19 18 17 38 38 H 1.09000 * 109.46743 * 239.99634 * 20 19 18 39 39 H 1.09000 * 109.47155 * 119.99812 * 20 19 18 40 40 H 1.09002 * 109.47824 * 300.00049 * 21 15 13 41 41 H 1.08997 * 109.46956 * 60.00260 * 22 21 15 42 42 H 1.09000 * 109.47068 * 180.02562 * 22 21 15 43 43 H 1.08997 * 109.47467 * 179.97438 * 23 18 17 44 44 H 1.09000 * 109.47245 * 300.00186 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4162 0.0000 4 1 2.2697 1.9091 -0.9343 5 6 2.2300 2.0825 1.1928 6 7 2.7846 3.2750 1.2008 7 14 1.6927 1.2917 2.7976 8 1 2.7860 0.4304 3.3155 9 1 1.3832 2.3503 3.7919 10 1 0.4816 0.4654 2.5610 11 6 2.0540 -0.7482 -1.2411 12 6 2.8324 -1.9524 -0.6576 13 6 2.2280 -2.0714 0.7647 14 1 1.2813 -2.6107 0.7355 15 6 3.2126 -2.7590 1.7127 16 1 4.1599 -2.2198 1.7065 17 6 3.4428 -4.1996 1.2518 18 6 3.0210 -5.1639 2.3623 19 6 1.5379 -4.9604 2.6784 20 6 1.3078 -3.5197 3.1393 21 6 2.6374 -2.7628 3.1304 22 6 3.6223 -3.4498 4.0786 23 6 3.8521 -4.8911 3.6176 24 8 2.0188 -0.6980 1.1577 25 1 -0.3633 0.5883 0.8427 26 1 -0.3633 0.4358 -0.9307 27 1 -0.3633 -1.0238 0.0880 28 1 2.9150 3.7436 2.0400 29 1 1.2238 -1.0931 -1.8574 30 1 2.7178 -0.1071 -1.8210 31 1 3.9003 -1.7391 -0.6098 32 1 2.6432 -2.8558 -1.2374 33 1 2.8504 -4.3941 0.3578 34 1 4.4994 -4.3446 1.0266 35 1 3.1846 -6.1903 2.0337 36 1 1.2374 -5.6476 3.4692 37 1 0.9458 -5.1547 1.7841 38 1 0.8980 -3.5224 4.1493 39 1 0.6064 -3.0298 2.4639 40 1 2.4734 -1.7365 3.4589 41 1 4.5693 -2.9102 4.0722 42 1 3.2123 -3.4529 5.0885 43 1 3.5513 -5.5777 4.4089 44 1 4.9087 -5.0361 3.3924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691535985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:25 Heat of formation + Delta-G solvation = -93.131149 kcal Electronic energy + Delta-G solvation = -22263.002057 eV Core-core repulsion = 19370.830392 eV Total energy + Delta-G solvation = -2892.171665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75509 -39.96289 -35.01736 -33.43752 -33.10612 -32.12245 -31.70696 -30.64881 -27.45405 -26.02724 -23.71699 -23.40780 -22.64830 -21.52408 -21.03529 -19.07111 -17.69897 -17.44620 -17.31134 -16.65063 -16.30204 -15.88112 -15.34315 -14.78108 -14.61836 -14.57267 -13.78337 -13.68422 -13.52767 -13.23133 -13.00979 -12.95027 -12.91471 -12.85383 -12.68280 -12.63519 -12.57141 -12.22971 -11.97907 -11.93646 -11.62572 -11.39793 -11.24738 -10.87075 -10.80641 -10.67216 -10.61182 -10.51013 -10.03697 -8.31742 -6.39960 1.35205 1.49078 1.60000 2.43150 3.00088 3.34373 3.58536 3.73421 3.83730 4.03333 4.06108 4.20456 4.34741 4.36076 4.47562 4.47580 4.51051 4.51301 4.57556 4.59557 4.61880 4.73200 4.77252 4.78717 4.82840 4.89924 5.01512 5.07638 5.09972 5.14810 5.18843 5.23869 5.29516 5.35329 5.43275 5.47777 5.48694 5.53188 5.58337 5.65423 5.66433 5.71216 6.21163 6.44838 6.75493 7.36904 8.81784 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.008048 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.299354 B = 3478.337063 C = 3960.379909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.186 3.814 3 C -0.517 4.517 4 H 0.043 0.957 5 C 0.027 3.973 6 N -0.948 5.948 7 Si 0.982 3.018 8 H -0.284 1.284 9 H -0.328 1.328 10 H -0.245 1.245 11 C -0.132 4.132 12 C -0.134 4.134 13 C 0.076 3.924 14 H 0.073 0.927 15 C -0.071 4.071 16 H 0.047 0.953 17 C -0.100 4.100 18 C -0.082 4.082 19 C -0.106 4.106 20 C -0.114 4.114 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.107 4.107 24 O -0.395 6.395 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -21.942 2.256 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.148 3.852 3 C -0.554 4.554 4 H 0.061 0.939 5 C -0.171 4.171 6 N -0.588 5.588 7 Si 0.815 3.185 8 H -0.211 1.211 9 H -0.259 1.259 10 H -0.170 1.170 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.019 3.981 14 H 0.091 0.909 15 C -0.090 4.090 16 H 0.066 0.934 17 C -0.138 4.138 18 C -0.100 4.100 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.144 4.144 24 O -0.316 6.316 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.103 -21.722 2.525 21.897 hybrid contribution 0.038 1.115 0.600 1.266 sum -1.065 -20.608 3.125 20.871 Atomic orbital electron populations 1.22313 0.96897 1.00133 1.01119 1.20089 0.91212 0.90371 0.83562 1.21300 1.44019 0.96984 0.93102 0.93881 1.25750 0.93693 0.94519 1.03174 1.70091 1.45238 1.15566 1.27889 0.85122 0.80457 0.75338 0.77577 1.21095 1.25895 1.16967 1.22877 0.99902 0.96542 0.97705 1.23057 0.99663 0.98398 0.96059 1.23405 0.97480 0.83685 0.93483 0.90885 1.21122 0.96954 0.96861 0.94057 0.93417 1.21568 1.01975 0.91569 0.98670 1.21061 0.94783 0.99405 0.94796 1.21524 0.96280 0.94976 1.01590 1.21544 0.95842 0.96760 1.01041 1.21030 0.96427 0.97956 0.95315 1.21553 0.98139 0.97111 0.98378 1.21538 1.00127 0.94990 0.97767 1.88400 1.86634 1.21118 1.35495 0.94743 0.92038 0.92579 0.92927 0.90059 0.92954 0.92167 0.87929 0.90489 0.91058 0.88867 0.90743 0.91335 0.92223 0.93157 0.94916 0.93416 0.91930 0.90712 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 8.24 71.98 0.59 -5.56 16 2 C 0.19 8.70 0.69 -11.17 -0.01 8.70 16 3 C -0.52 -30.41 8.65 25.60 0.22 -30.19 16 4 H 0.04 2.76 7.91 -2.91 -0.02 2.74 16 5 C 0.03 1.64 5.46 84.65 0.46 2.11 16 6 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 7 Si 0.98 52.49 24.05 68.60 1.65 54.14 16 8 H -0.28 -15.24 6.40 99.48 0.64 -14.60 16 9 H -0.33 -17.64 7.11 99.48 0.71 -16.93 16 10 H -0.24 -12.27 5.46 99.48 0.54 -11.72 16 11 C -0.13 -5.08 6.26 31.58 0.20 -4.89 16 12 C -0.13 -4.30 5.92 31.89 0.19 -4.11 16 13 C 0.08 2.62 2.09 31.28 0.07 2.68 16 14 H 0.07 2.30 6.50 -2.39 -0.02 2.29 16 15 C -0.07 -2.19 2.00 -10.80 -0.02 -2.21 16 16 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 17 C -0.10 -2.16 5.03 30.60 0.15 -2.01 16 18 C -0.08 -1.48 3.19 -10.79 -0.03 -1.51 16 19 C -0.11 -2.02 5.71 30.59 0.17 -1.84 16 20 C -0.11 -2.99 5.37 30.60 0.16 -2.83 16 21 C -0.09 -2.76 2.60 -10.79 -0.03 -2.79 16 22 C -0.11 -2.91 5.71 30.61 0.17 -2.74 16 23 C -0.11 -2.01 5.71 30.61 0.17 -1.84 16 24 O -0.39 -18.16 5.40 -148.98 -0.80 -18.97 16 25 H 0.03 1.55 6.00 -2.38 -0.01 1.54 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 28 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 29 H 0.08 2.63 7.70 -2.39 -0.02 2.61 16 30 H 0.05 2.19 7.59 -2.39 -0.02 2.17 16 31 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 32 H 0.10 2.45 7.73 -2.38 -0.02 2.44 16 33 H 0.08 1.49 6.92 -2.39 -0.02 1.47 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.46 6.48 -2.39 -0.02 1.44 16 40 H 0.03 1.30 6.71 -2.39 -0.02 1.29 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.23 312.48 4.33 -65.90 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.71 Total: 9.87 kcal Atomic # 6 Polarization: -51.50 SS G_CDS: 2.48 Total: -49.02 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.30 Total: -61.92 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.80 Total: -18.97 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.65 Total: 54.14 kcal Total: -70.23 4.33 -65.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.236 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds