Wall clock time and date at job start Mon Mar 30 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.82295 * 2 1 4 4 H 1.08005 * 119.99307 * 239.11533 * 3 2 1 5 5 C 1.37872 * 120.00137 * 59.11097 * 3 2 1 6 6 N 1.31514 * 120.00095 * 0.02562 * 5 3 2 7 7 Si 1.86805 * 120.00033 * 179.97438 * 5 3 2 8 8 H 1.48505 * 109.46894 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47084 * 120.00006 * 7 5 3 10 10 H 1.48497 * 109.47230 * 240.00467 * 7 5 3 11 11 C 1.54381 * 109.82927 * 239.11392 * 2 1 3 12 12 C 1.55308 * 102.43411 * 219.03068 * 11 2 1 13 13 C 1.55499 * 100.69966 * 34.12582 * 12 11 2 14 14 H 1.08995 * 110.28924 * 82.50957 * 13 12 11 15 15 C 1.52995 * 110.36961 * 204.61493 * 13 12 11 16 16 H 1.08996 * 109.47384 * 57.68603 * 15 13 12 17 17 C 1.52999 * 109.46996 * 177.68812 * 15 13 12 18 18 C 1.53005 * 109.47051 * 119.99617 * 17 15 13 19 19 C 1.52995 * 109.47226 * 299.99835 * 18 17 15 20 20 C 1.52999 * 109.46970 * 60.00116 * 19 18 17 21 21 C 1.53000 * 109.47512 * 0.02562 * 20 19 18 22 22 C 1.53001 * 109.47105 * 59.99590 * 21 20 19 23 23 C 1.52999 * 109.47270 * 300.00558 * 22 21 20 24 24 O 1.43240 * 109.82967 * 120.97525 * 2 1 3 25 25 H 1.09000 * 109.47076 * 180.88595 * 1 2 3 26 26 H 1.09008 * 109.47160 * 300.88823 * 1 2 3 27 27 H 1.09002 * 109.47433 * 60.88693 * 1 2 3 28 28 H 0.97003 * 120.00279 * 180.02562 * 6 5 3 29 29 H 1.09001 * 110.84797 * 337.31326 * 11 2 1 30 30 H 1.09001 * 110.84886 * 100.73869 * 11 2 1 31 31 H 1.08998 * 111.12732 * 152.15737 * 12 11 2 32 32 H 1.09011 * 111.12314 * 276.31314 * 12 11 2 33 33 H 1.09003 * 109.46927 * 239.99581 * 17 15 13 34 34 H 1.08998 * 109.47279 * 359.97438 * 17 15 13 35 35 H 1.08999 * 109.46797 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.47273 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.47380 * 299.99858 * 19 18 17 38 38 H 1.09001 * 109.47328 * 239.99939 * 20 19 18 39 39 H 1.09003 * 109.47279 * 120.00394 * 20 19 18 40 40 H 1.08994 * 109.47407 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47133 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46442 * 60.00425 * 22 21 20 43 43 H 1.09003 * 109.46927 * 239.99721 * 23 22 21 44 44 H 1.08997 * 109.46864 * 119.99814 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6759 1.7628 -0.8028 5 6 1.6982 2.2741 1.0246 6 7 0.9256 1.8537 2.0023 7 14 2.3323 4.0313 1.0250 8 1 3.1762 4.2532 -0.1766 9 1 1.1835 4.9721 1.0030 10 1 3.1407 4.2656 2.2483 11 6 2.0537 -0.7455 -1.2463 12 6 3.2754 -1.5215 -0.6830 13 6 2.7747 -1.8451 0.7531 14 1 2.1401 -2.7311 0.7415 15 6 3.9612 -2.0549 1.6961 16 1 4.5883 -1.1635 1.6949 17 6 3.4465 -2.3146 3.1133 18 6 3.9241 -3.6894 3.5854 19 6 3.3869 -4.7676 2.6422 20 6 3.9015 -4.5079 1.2250 21 6 4.7825 -3.2569 1.2234 22 6 5.9689 -3.4674 2.1663 23 6 5.4542 -3.7271 3.5836 24 8 2.0159 -0.6935 1.1553 25 1 -0.3633 -1.0275 0.0159 26 1 -0.3634 0.5276 0.8820 27 1 -0.3634 0.5000 -0.8978 28 1 0.6840 2.4564 2.7230 29 1 1.3012 -1.4336 -1.6314 30 1 2.3638 -0.0409 -2.0180 31 1 3.4595 -2.4319 -1.2533 32 1 4.1637 -0.8902 -0.6569 33 1 3.8293 -1.5464 3.7853 34 1 2.3568 -2.2880 3.1147 35 1 3.5578 -3.8742 4.5952 36 1 3.7275 -5.7469 2.9783 37 1 2.2972 -4.7414 2.6436 38 1 3.0563 -4.3583 0.5532 39 1 4.4862 -5.3639 0.8882 40 1 5.1487 -3.0717 0.2137 41 1 6.5962 -2.5761 2.1656 42 1 6.5532 -4.3237 1.8293 43 1 5.8373 -2.9592 4.2556 44 1 5.7941 -4.7067 3.9197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691535989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:31 Heat of formation + Delta-G solvation = -76.050171 kcal Electronic energy + Delta-G solvation = -21941.885990 eV Core-core repulsion = 19050.455012 eV Total energy + Delta-G solvation = -2891.430979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38746 -37.91061 -33.17344 -31.61118 -31.09757 -30.69660 -30.44569 -28.65981 -25.20457 -24.32659 -22.37680 -21.91148 -21.54107 -19.91102 -19.17685 -16.83631 -16.20602 -16.09583 -15.67021 -15.19106 -14.52020 -14.31699 -13.53161 -12.91808 -12.62791 -12.54543 -12.28351 -11.89844 -11.87059 -11.74289 -11.72020 -11.65187 -11.54878 -11.22302 -11.18727 -10.84390 -10.66422 -10.50823 -10.37958 -10.23410 -10.06460 -9.91020 -9.68110 -9.43314 -9.35843 -9.10909 -9.00328 -8.41886 -7.70293 -5.87816 -4.03364 3.32148 3.40552 3.43670 4.47364 4.73367 4.83272 4.88957 5.11651 5.45909 5.47786 5.52381 5.54826 5.60317 5.61536 5.61946 5.67924 5.74717 5.87125 5.90512 5.92184 5.97902 6.12045 6.20903 6.24315 6.33887 6.38889 6.42235 6.49513 6.57269 6.60612 6.65138 6.77153 6.82367 6.84115 6.90155 6.97425 6.99735 7.09750 7.22552 7.46705 7.84835 8.17960 8.46394 8.74811 9.16112 9.67304 11.13834 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.006439 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.672922 B = 4347.230771 C = 4686.870649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.229 3.771 3 C -0.528 4.528 4 H 0.056 0.944 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.884 3.116 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.144 4.144 12 C -0.144 4.144 13 C 0.085 3.915 14 H 0.045 0.955 15 C -0.073 4.073 16 H 0.071 0.929 17 C -0.100 4.100 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.111 4.111 24 O -0.348 6.348 25 H 0.009 0.991 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -11.874 0.258 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.192 3.808 3 C -0.566 4.566 4 H 0.075 0.925 5 C -0.124 4.124 6 N -0.497 5.497 7 Si 0.712 3.288 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.182 4.182 12 C -0.182 4.182 13 C 0.026 3.974 14 H 0.063 0.937 15 C -0.091 4.091 16 H 0.090 0.910 17 C -0.137 4.137 18 C -0.106 4.106 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.149 4.149 23 C -0.149 4.149 24 O -0.267 6.267 25 H 0.029 0.971 26 H 0.108 0.892 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.312 -11.748 0.636 13.351 hybrid contribution 0.402 0.960 -0.210 1.061 sum 6.714 -10.788 0.426 12.714 Atomic orbital electron populations 1.22008 0.97794 0.97481 1.02550 1.19605 0.90664 0.90467 0.80099 1.21266 1.32102 0.94748 1.08444 0.92549 1.24973 0.94285 0.97879 0.95221 1.69966 1.34552 1.34768 1.10405 0.86694 0.78800 0.85392 0.77958 1.19857 1.21041 1.21016 1.23203 0.96264 0.98403 1.00302 1.23251 0.99103 0.98958 0.96874 1.22837 0.91657 0.91156 0.91773 0.93712 1.21174 0.96158 0.96877 0.94919 0.91041 1.21460 1.01583 0.94737 0.95956 1.21088 0.95010 0.96154 0.98378 1.21496 1.00317 0.97704 0.95264 1.21559 0.99413 0.97111 0.97045 1.21028 0.95075 0.95038 0.98662 1.21513 0.97207 1.00922 0.95232 1.21531 0.95705 1.00728 0.96911 1.88738 1.68981 1.37063 1.31949 0.97146 0.89164 0.94742 0.93288 0.93360 0.91649 0.92621 0.91248 0.92438 0.91031 0.91868 0.92796 0.92137 0.91711 0.92782 0.91382 0.92200 0.92583 0.92313 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.52 37.16 0.32 -3.19 16 2 C 0.23 5.79 0.82 -91.05 -0.07 5.71 16 3 C -0.53 -14.63 8.23 -34.44 -0.28 -14.92 16 4 H 0.06 1.55 7.48 -52.48 -0.39 1.16 16 5 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 6 N -0.86 -24.89 10.92 55.43 0.61 -24.28 16 7 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 8 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 C -0.14 -3.06 6.06 -24.78 -0.15 -3.21 16 12 C -0.14 -2.73 5.57 -24.18 -0.13 -2.86 16 13 C 0.08 1.69 2.34 -25.41 -0.06 1.63 16 14 H 0.05 0.88 6.47 -51.93 -0.34 0.54 16 15 C -0.07 -1.28 2.01 -90.59 -0.18 -1.46 16 16 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.10 -1.72 5.18 -26.73 -0.14 -1.85 16 18 C -0.09 -1.20 3.20 -90.59 -0.29 -1.49 16 19 C -0.11 -1.41 5.71 -26.73 -0.15 -1.57 16 20 C -0.11 -1.48 5.37 -26.73 -0.14 -1.62 16 21 C -0.08 -1.12 2.53 -90.59 -0.23 -1.35 16 22 C -0.11 -1.39 5.71 -26.73 -0.15 -1.54 16 23 C -0.11 -1.37 5.71 -26.70 -0.15 -1.52 16 24 O -0.35 -8.85 9.40 -35.23 -0.33 -9.18 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 2.49 6.01 -51.92 -0.31 2.17 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.94 7.85 -51.93 -0.41 0.54 16 30 H 0.06 1.37 7.61 -51.93 -0.40 0.98 16 31 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 32 H 0.07 1.35 8.07 -51.92 -0.42 0.93 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.39 7.38 -51.93 -0.38 1.00 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.95 7.27 -51.93 -0.38 0.57 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -28.93 322.02 -9.80 -38.72 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.98 Total: 0.53 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -1.92 Total: -27.06 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.61 Total: -24.28 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.33 Total: -9.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.93 -9.80 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691535989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.327 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds