Wall clock time and date at job start Mon Mar 30 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 N 1.46507 * 109.46743 * 119.99907 * 2 1 3 5 5 C 1.36878 * 126.39682 * 300.18609 * 4 2 1 6 6 C 1.34665 * 106.81550 * 180.25307 * 5 4 2 7 7 N 1.34122 * 108.02191 * 359.75035 * 6 5 4 8 8 C 1.30497 * 109.25513 * 359.97438 * 7 6 5 9 9 C 1.50700 * 125.65067 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.67959 * 197.99296 * 9 8 7 11 11 C 1.54998 * 110.61560 * 75.02733 * 9 8 7 12 12 C 1.54817 * 102.09299 * 204.47666 * 11 9 8 13 13 C 1.54103 * 104.18742 * 20.87927 * 12 11 9 14 14 C 1.52997 * 109.87236 * 121.45241 * 13 12 11 15 15 C 1.50690 * 109.87976 * 242.60530 * 13 12 11 16 16 H 1.07999 * 120.00391 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00111 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99733 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00294 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46981 * 90.00299 * 19 17 15 21 21 H 1.48500 * 109.46876 * 210.00106 * 19 17 15 22 22 H 1.48495 * 109.47114 * 330.00219 * 19 17 15 23 23 O 1.43743 * 107.29422 * 2.03385 * 13 12 11 24 24 H 1.08994 * 109.47550 * 300.00558 * 1 2 3 25 25 H 1.09007 * 109.46768 * 60.00319 * 1 2 3 26 26 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47423 * 239.99949 * 2 1 3 28 28 H 1.09005 * 109.47408 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47564 * 299.99982 * 3 2 1 30 30 H 1.09006 * 109.47002 * 59.99440 * 3 2 1 31 31 H 1.08002 * 126.59334 * 359.97438 * 5 4 2 32 32 H 1.08003 * 125.98832 * 179.72083 * 6 5 4 33 33 H 1.09006 * 110.90698 * 86.27896 * 11 9 8 34 34 H 1.08999 * 110.91319 * 322.67233 * 11 9 8 35 35 H 1.08997 * 110.48848 * 139.55819 * 12 11 9 36 36 H 1.09000 * 110.48823 * 262.20698 * 12 11 9 37 37 H 1.09003 * 109.47201 * 60.00806 * 14 13 12 38 38 H 1.09004 * 109.46983 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47766 * 300.00051 * 14 13 12 40 40 H 0.96991 * 119.99812 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7666 -0.3410 2.4955 6 6 2.4080 -1.2359 3.2709 7 7 3.0297 -2.1113 2.4671 8 6 2.7974 -1.7932 1.2230 9 6 3.3180 -2.5303 0.0161 10 1 3.2546 -1.9045 -0.8741 11 6 2.5405 -3.8550 -0.1916 12 6 3.5611 -4.7095 -0.9823 13 6 4.9207 -4.0505 -0.6791 14 6 5.8616 -5.0714 -0.0363 15 6 5.5282 -3.5199 -1.9520 16 1 5.0046 -3.6356 -2.8895 17 6 6.7521 -2.8858 -1.9198 18 7 7.3895 -2.7444 -0.7781 19 14 7.5048 -2.2274 -3.4975 20 1 7.0630 -0.8256 -3.7094 21 1 8.9857 -2.2694 -3.3945 22 1 7.0643 -3.0638 -4.6427 23 8 4.6766 -2.9678 0.2343 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.1720 0.4947 2.8338 32 1 2.4202 -1.2465 4.3508 33 1 1.6366 -3.6878 -0.7774 34 1 2.3021 -4.3203 0.7648 35 1 3.5498 -5.7407 -0.6295 36 1 3.3469 -4.6683 -2.0503 37 1 6.0117 -5.9076 -0.7191 38 1 6.8206 -4.5985 0.1757 39 1 5.4231 -5.4351 0.8929 40 1 8.2503 -2.2979 -0.7553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692898537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:45 Heat of formation + Delta-G solvation = 14.483348 kcal Electronic energy + Delta-G solvation = -21066.300415 eV Core-core repulsion = 18075.254921 eV Total energy + Delta-G solvation = -2991.045494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75069 -38.18144 -35.88030 -32.98739 -30.92413 -30.66766 -30.42552 -28.37156 -27.43992 -25.20512 -24.65333 -22.70418 -21.55955 -20.29782 -19.32182 -18.85492 -16.97152 -16.44087 -15.28415 -14.99171 -14.68663 -14.41795 -14.16379 -13.61583 -13.44306 -13.33300 -13.02290 -12.58871 -12.42802 -12.24240 -12.21322 -11.52150 -11.45557 -11.22014 -11.08466 -10.98641 -10.87482 -10.60298 -10.49831 -10.31279 -9.83556 -9.43810 -9.35029 -9.19747 -9.13273 -8.46193 -8.01941 -7.79633 -5.90449 -4.09730 2.41651 3.01765 3.29455 3.37089 3.39071 3.65124 4.42798 4.52086 4.78500 4.82695 4.94857 5.08270 5.25036 5.34296 5.45459 5.49132 5.54692 5.59662 5.67486 5.74073 5.82449 5.88951 6.02098 6.03716 6.28005 6.28919 6.39531 6.62198 6.74159 6.78692 6.90043 7.06511 7.17888 7.20823 7.50958 7.58244 7.81485 8.11086 8.39054 8.60365 8.71114 9.00897 9.62460 11.09969 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.006865 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.525567 B = 4077.508828 C = 4582.183795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 C -0.161 4.161 4 N -0.449 5.449 5 C -0.070 4.070 6 C -0.034 4.034 7 N -0.469 5.469 8 C 0.233 3.767 9 C 0.164 3.836 10 H 0.068 0.932 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.224 3.776 14 C -0.129 4.129 15 C -0.546 4.546 16 H 0.057 0.943 17 C 0.082 3.918 18 N -0.855 5.855 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 O -0.329 6.329 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.090 0.910 39 H 0.017 0.983 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 5.845 1.469 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 C -0.218 4.218 4 N -0.134 5.134 5 C -0.202 4.202 6 C -0.183 4.183 7 N -0.187 5.187 8 C -0.030 4.030 9 C 0.103 3.897 10 H 0.085 0.915 11 C -0.178 4.178 12 C -0.179 4.179 13 C 0.186 3.814 14 C -0.187 4.187 15 C -0.584 4.584 16 H 0.075 0.925 17 C -0.124 4.124 18 N -0.491 5.491 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.199 1.199 23 O -0.247 6.247 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.519 5.397 1.853 13.758 hybrid contribution -0.220 1.235 -1.173 1.718 sum -12.738 6.632 0.680 14.378 Atomic orbital electron populations 1.22140 0.93519 1.03067 1.02889 1.21483 0.95177 0.94255 0.87281 1.22146 1.02715 0.94249 1.02734 1.45546 1.39017 1.22511 1.06323 1.22384 1.09588 1.04840 0.83406 1.22296 1.01241 0.95302 0.99477 1.70324 1.21700 1.27048 0.99578 1.23317 0.95898 0.88373 0.95399 1.20814 0.87019 0.93260 0.88569 0.91495 1.23059 0.97881 0.96294 1.00563 1.23089 0.96690 0.98635 0.99465 1.19682 0.89410 0.84094 0.88194 1.21754 1.03204 0.96948 0.96749 1.21449 1.04309 1.39737 0.92870 0.92507 1.25013 0.96732 0.95089 0.95574 1.69974 1.14423 1.40448 1.24284 0.86742 0.78545 0.79353 0.84152 1.20754 1.21125 1.19864 1.89183 1.22398 1.52556 1.60589 0.91913 0.90700 0.91760 0.87722 0.91373 0.90708 0.91974 0.81759 0.81948 0.92236 0.91112 0.92444 0.91672 0.94359 0.89165 0.96346 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.25 37.16 0.34 -1.16 16 2 C 0.12 1.52 3.53 -67.93 -0.24 1.28 16 3 C -0.16 -1.76 9.25 37.16 0.34 -1.41 16 4 N -0.45 -7.25 2.61 -106.83 -0.28 -7.53 16 5 C -0.07 -1.03 10.60 -16.56 -0.18 -1.21 16 6 C -0.03 -0.59 11.87 -17.82 -0.21 -0.80 16 7 N -0.47 -10.15 11.23 -10.82 -0.12 -10.27 16 8 C 0.23 4.75 6.89 -155.42 -1.07 3.68 16 9 C 0.16 3.59 3.55 -26.83 -0.10 3.49 16 10 H 0.07 1.43 6.69 -51.93 -0.35 1.09 16 11 C -0.14 -2.70 6.57 -24.72 -0.16 -2.86 16 12 C -0.14 -2.98 6.26 -25.20 -0.16 -3.14 16 13 C 0.22 5.71 0.74 -91.20 -0.07 5.65 16 14 C -0.13 -3.27 8.45 37.16 0.31 -2.96 16 15 C -0.55 -14.87 8.19 -34.44 -0.28 -15.16 16 16 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 17 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 18 N -0.86 -24.98 10.93 55.43 0.61 -24.37 16 19 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 O -0.33 -8.86 10.07 -35.23 -0.35 -9.21 16 24 H 0.06 0.55 7.95 -51.93 -0.41 0.13 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 1.38 6.46 -51.93 -0.34 1.05 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 31 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.16 2.30 8.06 -52.48 -0.42 1.87 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 35 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 36 H 0.06 1.32 7.39 -51.93 -0.38 0.94 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 2.53 6.01 -51.93 -0.31 2.22 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -32.64 323.07 -8.20 -40.84 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.35 Total: 2.06 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.56 Total: -12.43 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.21 Total: -42.18 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.35 Total: -9.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.64 -8.20 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692898537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.324 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds