Wall clock time and date at job start Mon Mar 30 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46492 * 109.47363 * 120.00161 * 2 1 3 5 5 C 1.36890 * 126.39663 * 300.02907 * 4 2 1 6 6 C 1.34666 * 106.81425 * 179.97438 * 5 4 2 7 7 N 1.34124 * 108.02551 * 0.02562 * 6 5 4 8 8 C 1.30502 * 109.25696 * 359.72152 * 7 6 5 9 9 C 1.50695 * 125.65408 * 180.29288 * 8 7 6 10 10 H 1.09006 * 109.48010 * 195.17490 * 9 8 7 11 11 C 1.53093 * 109.47944 * 75.15530 * 9 8 7 12 12 C 1.53179 * 109.16541 * 182.40796 * 11 9 8 13 13 C 1.53182 * 109.03500 * 56.97467 * 12 11 9 14 14 C 1.53088 * 109.16760 * 303.02577 * 13 12 11 15 15 H 1.09000 * 109.47666 * 297.62537 * 14 13 12 16 16 C 1.50700 * 109.47985 * 177.60201 * 14 13 12 17 17 H 1.07993 * 120.00205 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99586 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00607 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99588 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46922 * 60.00125 * 20 18 16 22 22 H 1.48504 * 109.46909 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47092 * 299.99658 * 20 18 16 24 24 O 1.42898 * 109.42600 * 57.59860 * 14 13 12 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.07993 * 126.59095 * 0.03499 * 5 4 2 33 33 H 1.08005 * 125.98695 * 179.97438 * 6 5 4 34 34 H 1.08990 * 109.52415 * 302.31391 * 11 9 8 35 35 H 1.09006 * 109.52221 * 62.50681 * 11 9 8 36 36 H 1.08997 * 109.54762 * 176.84880 * 12 11 9 37 37 H 1.09006 * 109.54474 * 297.11790 * 12 11 9 38 38 H 1.09003 * 109.51668 * 62.93189 * 13 12 11 39 39 H 1.08997 * 109.52078 * 183.04754 * 13 12 11 40 40 H 0.96993 * 120.00485 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7693 -0.3393 2.4955 6 6 2.4048 -1.2385 3.2708 7 7 3.0254 -2.1146 2.4669 8 6 2.7938 -1.7960 1.2227 9 6 3.3089 -2.5368 0.0158 10 1 3.1933 -1.9127 -0.8705 11 6 2.5144 -3.8328 -0.1652 12 6 3.0829 -4.6089 -1.3573 13 6 4.5735 -4.8692 -1.1189 14 6 5.2885 -3.5331 -0.9010 15 1 5.1989 -2.9223 -1.7993 16 6 6.7450 -3.7847 -0.6075 17 1 7.1233 -4.7958 -0.5786 18 6 7.5945 -2.7239 -0.3747 19 7 7.1338 -1.4925 -0.4093 20 14 9.3998 -3.0357 -0.0101 21 1 10.0205 -3.7476 -1.1560 22 1 10.0932 -1.7396 0.2011 23 1 9.5211 -3.8677 1.2140 24 8 4.6910 -2.8487 0.2020 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.1763 0.4975 2.8337 33 1 2.4138 -1.2514 4.3507 34 1 2.5963 -4.4393 0.7367 35 1 1.4670 -3.5950 -0.3516 36 1 2.5582 -5.5590 -1.4575 37 1 2.9562 -4.0230 -2.2677 38 1 4.6970 -5.4966 -0.2362 39 1 4.9984 -5.3736 -1.9866 40 1 7.7314 -0.7463 -0.2459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692898764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:24 Heat of formation + Delta-G solvation = -17.071679 kcal Electronic energy + Delta-G solvation = -20972.276384 eV Core-core repulsion = 17979.862561 eV Total energy + Delta-G solvation = -2992.413823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.06816 -39.77740 -36.93942 -34.99335 -34.16050 -32.71212 -31.63627 -29.87836 -28.23281 -27.53699 -25.33151 -23.89030 -23.59872 -21.92276 -20.81996 -20.28568 -18.75499 -18.06489 -16.79207 -16.69113 -16.26443 -16.05955 -15.68530 -15.21436 -15.08038 -14.73393 -14.61600 -14.36516 -14.02940 -13.86914 -13.30744 -13.17143 -13.11032 -12.85181 -12.73719 -12.54160 -12.41855 -12.20024 -12.11503 -11.85540 -11.73846 -11.48082 -10.89700 -10.74206 -10.58619 -10.49794 -9.82622 -9.20887 -8.16216 -6.35428 1.12594 1.38305 1.43137 1.49466 1.82960 2.26865 2.40174 3.03131 3.43229 3.58278 3.67248 3.91769 4.00267 4.01349 4.07672 4.15906 4.25584 4.40926 4.42616 4.53257 4.63368 4.66434 4.75076 4.77598 4.83870 4.88515 4.95414 5.02890 5.09514 5.14313 5.20013 5.21268 5.27001 5.48063 5.56995 5.77046 5.94933 6.19553 6.30124 6.65683 7.15951 7.35117 7.40939 8.91361 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.006518 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.239075 B = 4294.521477 C = 4775.454229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.111 3.889 3 C -0.155 4.155 4 N -0.443 5.443 5 C -0.040 4.040 6 C -0.068 4.068 7 N -0.518 5.518 8 C 0.201 3.799 9 C 0.167 3.833 10 H 0.048 0.952 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.139 4.139 14 C 0.215 3.785 15 H -0.014 1.014 16 C -0.550 4.550 17 H 0.065 0.935 18 C 0.025 3.975 19 N -0.896 5.896 20 Si 0.960 3.040 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.275 1.275 24 O -0.373 6.373 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.213 0.787 33 H 0.184 0.816 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 4.929 -0.996 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 C -0.213 4.213 4 N -0.127 5.127 5 C -0.173 4.173 6 C -0.215 4.215 7 N -0.237 5.237 8 C -0.062 4.062 9 C 0.106 3.894 10 H 0.065 0.935 11 C -0.164 4.164 12 C -0.148 4.148 13 C -0.176 4.176 14 C 0.160 3.840 15 H 0.004 0.996 16 C -0.588 4.588 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.533 5.533 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.200 1.200 24 O -0.292 6.292 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.230 0.770 33 H 0.201 0.799 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.555 4.576 -0.708 16.229 hybrid contribution 0.804 0.618 0.029 1.014 sum -14.751 5.194 -0.679 15.653 Atomic orbital electron populations 1.22106 0.90315 1.03190 1.04938 1.21831 0.97492 0.94384 0.85357 1.22129 1.00502 0.93661 1.04983 1.45782 1.37861 1.21049 1.07959 1.23051 1.07698 1.04295 0.82300 1.22794 1.02296 0.95788 1.00664 1.70182 1.22847 1.29684 1.00981 1.22875 0.98235 0.90455 0.94627 1.20001 0.85861 0.93954 0.89562 0.93461 1.22015 0.99236 0.95785 0.99354 1.21601 0.95094 1.00932 0.97195 1.22132 0.95922 0.98617 1.00972 1.19662 0.91338 0.87977 0.85051 0.99613 1.21422 0.92794 0.93260 1.51275 0.91656 1.25944 1.03440 0.94810 0.93607 1.70160 1.36670 0.98937 1.47485 0.85602 0.79267 0.77530 0.79162 1.18285 1.20787 1.20004 1.88396 1.19326 1.77921 1.43540 0.88004 0.92535 0.90515 0.89283 0.94877 0.87831 0.90308 0.77045 0.79919 0.92634 0.89709 0.89243 0.91369 0.93433 0.91164 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.25 71.98 0.67 -1.62 16 2 C 0.11 2.64 3.53 44.99 0.16 2.80 16 3 C -0.16 -3.24 9.25 71.98 0.67 -2.58 16 4 N -0.44 -14.30 2.61 -491.92 -1.28 -15.58 16 5 C -0.04 -1.14 10.60 83.08 0.88 -0.26 16 6 C -0.07 -2.39 11.87 83.52 0.99 -1.40 16 7 N -0.52 -23.75 11.25 -188.13 -2.12 -25.86 16 8 C 0.20 8.54 6.79 138.12 0.94 9.48 16 9 C 0.17 7.40 2.98 29.88 0.09 7.49 16 10 H 0.05 2.04 6.52 -2.38 -0.02 2.02 16 11 C -0.13 -4.59 5.40 30.69 0.17 -4.42 16 12 C -0.11 -3.78 6.03 30.71 0.19 -3.59 16 13 C -0.14 -6.01 5.36 30.68 0.16 -5.84 16 14 C 0.22 11.74 2.50 29.88 0.07 11.81 16 15 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 16 C -0.55 -32.68 8.79 25.60 0.23 -32.46 16 17 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 18 C 0.02 1.46 5.40 84.65 0.46 1.92 16 19 N -0.90 -56.06 12.84 21.45 0.28 -55.79 16 20 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 24 O -0.37 -21.17 9.42 -148.98 -1.40 -22.57 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.01 7.95 -2.39 -0.02 0.99 16 28 H 0.09 2.33 6.39 -2.39 -0.02 2.32 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16 32 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.18 5.30 8.06 -2.91 -0.02 5.28 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.80 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -78.36 325.26 4.16 -74.20 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.00 Total: 16.19 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.66 Total: -18.68 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -3.12 Total: -97.23 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.40 Total: -22.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -78.36 4.16 -74.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692898764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.129 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds