Wall clock time and date at job start Mon Mar 30 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.36875 * 126.39770 * 299.69141 * 4 2 1 6 6 C 1.34670 * 106.81482 * 179.84459 * 5 4 2 7 7 N 1.34125 * 108.02160 * 0.42044 * 6 5 4 8 8 C 1.30495 * 109.25776 * 359.73223 * 7 6 5 9 9 C 1.50702 * 125.65481 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.48256 * 164.93681 * 9 8 7 11 11 C 1.53093 * 109.47973 * 284.96241 * 9 8 7 12 12 C 1.53179 * 109.16308 * 177.59086 * 11 9 8 13 13 C 1.53177 * 109.03334 * 303.01551 * 12 11 9 14 14 C 1.53094 * 109.16253 * 56.98267 * 13 12 11 15 15 H 1.09003 * 109.48118 * 62.38223 * 14 13 12 16 16 C 1.50702 * 109.48033 * 182.40501 * 14 13 12 17 17 H 1.07996 * 119.99735 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00117 * 179.97438 * 16 14 13 19 19 N 1.31526 * 119.99881 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00363 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47196 * 89.99825 * 20 18 16 22 22 H 1.48501 * 109.47215 * 210.00261 * 20 18 16 23 23 H 1.48507 * 109.47069 * 330.00300 * 20 18 16 24 24 O 1.42903 * 109.41580 * 302.38808 * 14 13 12 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 30 30 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 32 32 H 1.08001 * 126.59368 * 359.97438 * 5 4 2 33 33 H 1.07999 * 125.98992 * 180.19111 * 6 5 4 34 34 H 1.09002 * 109.52158 * 297.49603 * 11 9 8 35 35 H 1.09006 * 109.52408 * 57.61723 * 11 9 8 36 36 H 1.08993 * 109.54041 * 62.88476 * 12 11 9 37 37 H 1.08996 * 109.53871 * 183.06142 * 12 11 9 38 38 H 1.08997 * 109.52033 * 176.88802 * 13 12 11 39 39 H 1.09000 * 109.52692 * 297.01235 * 13 12 11 40 40 H 0.96997 * 119.99630 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7746 -0.3354 2.4955 6 6 2.4054 -1.2378 3.2709 7 7 3.0253 -2.1144 2.4671 8 6 2.7979 -1.7930 1.2230 9 6 3.3185 -2.5301 0.0160 10 1 2.7673 -2.2130 -0.8692 11 6 4.8059 -2.2189 -0.1700 12 6 5.3416 -3.0181 -1.3619 13 6 5.0854 -4.5088 -1.1194 14 6 3.5873 -4.7315 -0.8967 15 1 3.0396 -4.4436 -1.7941 16 6 3.3344 -6.1870 -0.5990 17 1 4.1591 -6.8836 -0.5708 18 6 2.0502 -6.6291 -0.3615 19 7 1.0458 -5.7806 -0.3953 20 14 1.7368 -8.4331 0.0084 21 1 1.8201 -8.6597 1.4735 22 1 0.3839 -8.8096 -0.4747 23 1 2.7572 -9.2640 -0.6798 24 8 3.1475 -3.9361 0.2060 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.1873 0.5055 2.8337 33 1 2.4140 -1.2509 4.3508 34 1 4.9342 -1.1531 -0.3589 35 1 5.3518 -2.4973 0.7315 36 1 4.8300 -2.7034 -2.2714 37 1 6.4123 -2.8431 -1.4665 38 1 5.4137 -5.0806 -1.9874 39 1 5.6380 -4.8348 -0.2383 40 1 0.1424 -6.0917 -0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692898768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:27 Heat of formation + Delta-G solvation = 3.902869 kcal Electronic energy + Delta-G solvation = -20971.553146 eV Core-core repulsion = 17980.048848 eV Total energy + Delta-G solvation = -2991.504298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.71318 -37.99624 -35.84806 -32.96052 -32.41217 -30.92804 -30.40666 -28.29200 -27.41117 -25.62199 -23.66499 -22.67006 -21.83284 -20.52630 -19.26534 -18.84983 -17.06911 -16.38422 -15.14292 -14.92041 -14.74198 -14.47859 -14.29089 -13.76269 -13.69499 -13.51355 -13.06469 -12.94626 -12.58200 -12.39461 -12.20284 -12.07723 -11.70645 -11.45652 -11.22018 -10.92544 -10.83652 -10.64689 -10.34207 -10.26053 -9.85222 -9.73567 -9.30768 -9.14298 -8.85970 -8.48466 -8.01681 -7.74368 -5.97799 -4.08934 2.46668 3.04998 3.35979 3.42609 3.44347 3.71578 4.46470 4.54069 4.75794 4.84456 4.96340 5.10924 5.23751 5.36427 5.45899 5.49877 5.55251 5.58816 5.65000 5.69989 5.76175 5.85650 5.93279 6.02897 6.08552 6.11756 6.19821 6.30030 6.50565 6.68947 6.74990 6.86967 6.90519 6.90843 7.25127 7.52919 7.62935 7.93529 8.30491 8.70659 8.82469 9.15202 9.61126 11.10056 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.006519 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.297088 B = 4294.031083 C = 4774.989180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 C -0.158 4.158 4 N -0.450 5.450 5 C -0.069 4.069 6 C -0.034 4.034 7 N -0.467 5.467 8 C 0.238 3.762 9 C 0.172 3.828 10 H 0.048 0.952 11 C -0.136 4.136 12 C -0.119 4.119 13 C -0.145 4.145 14 C 0.218 3.782 15 H 0.013 0.987 16 C -0.523 4.523 17 H 0.065 0.935 18 C 0.079 3.921 19 N -0.859 5.859 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.272 1.272 24 O -0.333 6.333 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 14.728 -0.760 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.216 4.216 4 N -0.134 5.134 5 C -0.202 4.202 6 C -0.183 4.183 7 N -0.184 5.184 8 C -0.025 4.025 9 C 0.110 3.890 10 H 0.066 0.934 11 C -0.175 4.175 12 C -0.156 4.156 13 C -0.183 4.183 14 C 0.163 3.837 15 H 0.031 0.969 16 C -0.560 4.560 17 H 0.083 0.917 18 C -0.127 4.127 19 N -0.495 5.495 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.197 1.197 24 O -0.251 6.251 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.902 14.062 -0.442 14.098 hybrid contribution -0.804 0.010 -0.070 0.807 sum 0.098 14.071 -0.512 14.081 Atomic orbital electron populations 1.22145 0.93338 1.03756 1.02626 1.21453 0.95669 0.93686 0.87253 1.22145 1.02030 0.94544 1.02903 1.45530 1.38629 1.22962 1.06294 1.22363 1.09470 1.04964 0.83390 1.22286 1.01940 0.94603 0.99463 1.70314 1.23375 1.25128 0.99590 1.23126 0.95919 0.88173 0.95268 1.19821 0.92863 0.87490 0.88790 0.93431 1.22113 0.96865 0.98663 0.99863 1.21614 0.99641 0.97260 0.97111 1.22273 1.01410 0.93492 1.01117 1.19787 0.87056 0.90528 0.86333 0.96930 1.20985 0.93010 0.90879 1.51126 0.91662 1.25067 0.96255 0.97572 0.93852 1.70033 0.99208 1.34072 1.46200 0.86604 0.77441 0.85108 0.78883 1.20392 1.21219 1.19709 1.88539 1.83637 1.09660 1.43235 0.92001 0.90806 0.91137 0.87985 0.91874 0.91849 0.90739 0.81789 0.81993 0.92976 0.90721 0.92716 0.92738 0.92310 0.92154 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.26 37.16 0.34 -1.50 16 2 C 0.12 1.57 3.53 -67.92 -0.24 1.33 16 3 C -0.16 -1.52 9.25 37.16 0.34 -1.17 16 4 N -0.45 -7.49 2.61 -106.82 -0.28 -7.76 16 5 C -0.07 -1.07 10.60 -16.56 -0.18 -1.24 16 6 C -0.03 -0.61 11.87 -17.81 -0.21 -0.82 16 7 N -0.47 -10.42 11.25 -10.82 -0.12 -10.55 16 8 C 0.24 4.97 6.79 -155.41 -1.06 3.91 16 9 C 0.17 3.70 2.98 -27.83 -0.08 3.62 16 10 H 0.05 0.99 6.52 -51.93 -0.34 0.65 16 11 C -0.14 -2.52 5.40 -26.59 -0.14 -2.67 16 12 C -0.12 -2.10 6.03 -26.55 -0.16 -2.26 16 13 C -0.15 -3.11 5.36 -26.59 -0.14 -3.25 16 14 C 0.22 5.72 2.50 -27.83 -0.07 5.65 16 15 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 16 C -0.52 -14.99 8.79 -34.44 -0.30 -15.29 16 17 H 0.07 1.82 7.74 -52.49 -0.41 1.41 16 18 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 19 N -0.86 -25.86 12.84 55.43 0.71 -25.15 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 O -0.33 -9.00 9.42 -35.23 -0.33 -9.34 16 25 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.10 1.36 6.39 -51.93 -0.33 1.03 16 29 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.16 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -33.80 325.27 -8.67 -42.47 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.53 Total: 0.06 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.99 Total: -11.53 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.31 Total: -43.46 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.33 Total: -9.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.80 -8.67 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692898768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.369 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds