Wall clock time and date at job start Mon Mar 30 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.36875 * 126.39770 * 299.69141 * 4 2 1 6 6 C 1.34670 * 106.81482 * 179.84459 * 5 4 2 7 7 N 1.34125 * 108.02160 * 0.42044 * 6 5 4 8 8 C 1.30495 * 109.25776 * 359.73223 * 7 6 5 9 9 C 1.50702 * 125.65481 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.48256 * 164.93681 * 9 8 7 11 11 C 1.53093 * 109.47973 * 284.96241 * 9 8 7 12 12 C 1.53179 * 109.16308 * 177.59086 * 11 9 8 13 13 C 1.53177 * 109.03334 * 303.01551 * 12 11 9 14 14 C 1.53094 * 109.16253 * 56.98267 * 13 12 11 15 15 H 1.09003 * 109.48118 * 62.38223 * 14 13 12 16 16 C 1.50702 * 109.48033 * 182.40501 * 14 13 12 17 17 H 1.07996 * 119.99735 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00117 * 179.97438 * 16 14 13 19 19 N 1.31526 * 119.99881 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00363 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47196 * 89.99825 * 20 18 16 22 22 H 1.48501 * 109.47215 * 210.00261 * 20 18 16 23 23 H 1.48507 * 109.47069 * 330.00300 * 20 18 16 24 24 O 1.42903 * 109.41580 * 302.38808 * 14 13 12 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 30 30 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 32 32 H 1.08001 * 126.59368 * 359.97438 * 5 4 2 33 33 H 1.07999 * 125.98992 * 180.19111 * 6 5 4 34 34 H 1.09002 * 109.52158 * 297.49603 * 11 9 8 35 35 H 1.09006 * 109.52408 * 57.61723 * 11 9 8 36 36 H 1.08993 * 109.54041 * 62.88476 * 12 11 9 37 37 H 1.08996 * 109.53871 * 183.06142 * 12 11 9 38 38 H 1.08997 * 109.52033 * 176.88802 * 13 12 11 39 39 H 1.09000 * 109.52692 * 297.01235 * 13 12 11 40 40 H 0.96997 * 119.99630 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7746 -0.3354 2.4955 6 6 2.4054 -1.2378 3.2709 7 7 3.0253 -2.1144 2.4671 8 6 2.7979 -1.7930 1.2230 9 6 3.3185 -2.5301 0.0160 10 1 2.7673 -2.2130 -0.8692 11 6 4.8059 -2.2189 -0.1700 12 6 5.3416 -3.0181 -1.3619 13 6 5.0854 -4.5088 -1.1194 14 6 3.5873 -4.7315 -0.8967 15 1 3.0396 -4.4436 -1.7941 16 6 3.3344 -6.1870 -0.5990 17 1 4.1591 -6.8836 -0.5708 18 6 2.0502 -6.6291 -0.3615 19 7 1.0458 -5.7806 -0.3953 20 14 1.7368 -8.4331 0.0084 21 1 1.8201 -8.6597 1.4735 22 1 0.3839 -8.8096 -0.4747 23 1 2.7572 -9.2640 -0.6798 24 8 3.1475 -3.9361 0.2060 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.1873 0.5055 2.8337 33 1 2.4140 -1.2509 4.3508 34 1 4.9342 -1.1531 -0.3589 35 1 5.3518 -2.4973 0.7315 36 1 4.8300 -2.7034 -2.2714 37 1 6.4123 -2.8431 -1.4665 38 1 5.4137 -5.0806 -1.9874 39 1 5.6380 -4.8348 -0.2383 40 1 0.1424 -6.0917 -0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692898768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:27 Heat of formation + Delta-G solvation = -17.138310 kcal Electronic energy + Delta-G solvation = -20972.465560 eV Core-core repulsion = 17980.048848 eV Total energy + Delta-G solvation = -2992.416712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.06954 -39.77738 -36.93913 -34.99363 -34.16015 -32.71214 -31.63699 -29.87873 -28.23314 -27.53793 -25.33222 -23.89043 -23.59961 -21.92371 -20.82038 -20.28700 -18.75742 -18.06603 -16.79361 -16.69054 -16.26060 -16.05901 -15.68786 -15.21263 -15.08115 -14.73381 -14.62141 -14.36625 -14.03214 -13.86797 -13.30761 -13.17062 -13.11191 -12.88985 -12.71233 -12.55393 -12.41878 -12.17973 -12.10735 -11.85081 -11.73899 -11.47791 -10.89668 -10.74426 -10.59553 -10.49657 -9.82717 -9.20903 -8.16491 -6.35542 1.12600 1.38011 1.41846 1.50894 1.82978 2.26645 2.40023 3.02985 3.43206 3.58297 3.67223 3.91752 4.00255 4.01382 4.07554 4.15920 4.25591 4.40836 4.42665 4.53197 4.63362 4.66410 4.75033 4.77602 4.83858 4.88464 4.95415 5.02890 5.09526 5.14386 5.20000 5.21236 5.27018 5.48052 5.57098 5.77084 5.94869 6.19431 6.30077 6.65801 7.15914 7.35034 7.40804 8.91306 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.006519 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.297088 B = 4294.031083 C = 4774.989180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 C -0.148 4.148 4 N -0.443 5.443 5 C -0.040 4.040 6 C -0.068 4.068 7 N -0.518 5.518 8 C 0.201 3.799 9 C 0.167 3.833 10 H 0.048 0.952 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.138 4.138 14 C 0.215 3.785 15 H -0.013 1.013 16 C -0.549 4.549 17 H 0.065 0.935 18 C 0.024 3.976 19 N -0.896 5.896 20 Si 0.960 3.040 21 H -0.282 1.282 22 H -0.278 1.278 23 H -0.257 1.257 24 O -0.373 6.373 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.213 0.787 33 H 0.184 0.816 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 16.838 -1.045 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.009 3.991 3 C -0.205 4.205 4 N -0.126 5.126 5 C -0.173 4.173 6 C -0.216 4.216 7 N -0.237 5.237 8 C -0.062 4.062 9 C 0.106 3.894 10 H 0.066 0.934 11 C -0.164 4.164 12 C -0.148 4.148 13 C -0.176 4.176 14 C 0.159 3.841 15 H 0.004 0.996 16 C -0.586 4.586 17 H 0.084 0.916 18 C -0.178 4.178 19 N -0.533 5.533 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.203 1.203 23 H -0.181 1.181 24 O -0.292 6.292 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.201 0.799 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.948 16.183 -0.761 16.229 hybrid contribution -0.866 -0.542 0.045 1.022 sum 0.082 15.641 -0.716 15.658 Atomic orbital electron populations 1.22132 0.92203 1.01969 1.04977 1.21835 0.96557 0.95316 0.85352 1.22104 1.01555 0.91945 1.04943 1.45783 1.37088 1.21819 1.07960 1.23048 1.07285 1.04701 0.82304 1.22793 1.03028 0.95075 1.00664 1.70179 1.25238 1.27296 1.00982 1.22876 0.98448 0.90242 0.94632 1.20001 0.95033 0.84793 0.89547 0.93450 1.22015 0.94353 1.00676 0.99348 1.21595 1.01965 0.94075 0.97180 1.22129 0.97773 0.96757 1.00970 1.19675 0.89673 0.89642 0.85077 0.99588 1.21453 0.93342 0.92776 1.51047 0.91647 1.25946 0.96047 1.02204 0.93641 1.70175 0.99458 1.36133 1.47513 0.85544 0.77929 0.79759 0.78310 1.20761 1.20277 1.18110 1.88397 1.84497 1.12874 1.43415 0.90325 0.87824 0.94883 0.89270 0.90514 0.92531 0.88000 0.77042 0.79929 0.89724 0.92632 0.91377 0.89245 0.91181 0.93411 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.26 71.98 0.67 -2.58 16 2 C 0.11 2.64 3.53 44.99 0.16 2.80 16 3 C -0.15 -2.28 9.25 71.98 0.67 -1.62 16 4 N -0.44 -14.30 2.61 -491.88 -1.28 -15.58 16 5 C -0.04 -1.14 10.60 83.09 0.88 -0.26 16 6 C -0.07 -2.40 11.87 83.52 0.99 -1.41 16 7 N -0.52 -23.75 11.25 -188.13 -2.12 -25.87 16 8 C 0.20 8.54 6.79 138.13 0.94 9.48 16 9 C 0.17 7.40 2.98 29.88 0.09 7.49 16 10 H 0.05 2.04 6.52 -2.39 -0.02 2.03 16 11 C -0.13 -4.59 5.40 30.69 0.17 -4.42 16 12 C -0.11 -3.77 6.03 30.71 0.19 -3.59 16 13 C -0.14 -6.00 5.36 30.68 0.16 -5.84 16 14 C 0.21 11.71 2.50 29.88 0.07 11.79 16 15 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 16 C -0.55 -32.59 8.79 25.60 0.23 -32.36 16 17 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 18 C 0.02 1.43 5.40 84.65 0.46 1.89 16 19 N -0.90 -56.05 12.84 21.45 0.28 -55.78 16 20 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 O -0.37 -21.16 9.42 -148.98 -1.40 -22.56 16 25 H 0.08 1.37 7.96 -2.39 -0.02 1.35 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 2.33 6.39 -2.39 -0.02 2.32 16 29 H 0.08 1.00 7.95 -2.39 -0.02 0.99 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.21 3.84 8.06 -2.91 -0.02 3.81 16 33 H 0.18 5.31 8.06 -2.91 -0.02 5.29 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -78.39 325.27 4.16 -74.23 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.00 Total: 16.08 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 5.66 Total: -18.64 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -3.12 Total: -97.23 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.40 Total: -22.56 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.39 4.16 -74.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692898768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.091 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds