Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.36881 * 126.39778 * 60.02176 * 4 2 1 6 6 C 1.34665 * 106.81812 * 180.02562 * 5 4 2 7 7 N 1.34128 * 108.02142 * 359.97438 * 6 5 4 8 8 C 1.30498 * 109.25382 * 359.72468 * 7 6 5 9 9 C 1.50701 * 125.65113 * 180.29102 * 8 7 6 10 10 H 1.08994 * 109.48256 * 165.18155 * 9 8 7 11 11 C 1.53099 * 109.48126 * 285.20265 * 9 8 7 12 12 C 1.53172 * 109.16278 * 177.59192 * 11 9 8 13 13 C 1.53179 * 109.03925 * 303.01534 * 12 11 9 14 14 C 1.53098 * 109.15792 * 56.98151 * 13 12 11 15 15 H 1.09000 * 109.47661 * 182.40686 * 14 13 12 16 16 C 1.50697 * 109.47855 * 62.37805 * 14 13 12 17 17 H 1.08002 * 120.00466 * 359.97438 * 16 14 13 18 18 C 1.37886 * 119.99763 * 179.97438 * 16 14 13 19 19 N 1.31507 * 119.99751 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99865 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47007 * 60.00106 * 20 18 16 22 22 H 1.48497 * 109.46882 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47005 * 300.00212 * 20 18 16 24 24 O 1.42901 * 109.48071 * 45.15276 * 9 8 7 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.07997 * 126.59179 * 0.03945 * 5 4 2 33 33 H 1.08000 * 125.99149 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.52013 * 297.49447 * 11 9 8 35 35 H 1.08998 * 109.52319 * 57.62150 * 11 9 8 36 36 H 1.09004 * 109.54511 * 62.88656 * 12 11 9 37 37 H 1.09004 * 109.54212 * 183.15025 * 12 11 9 38 38 H 1.08996 * 109.52492 * 176.88723 * 13 12 11 39 39 H 1.09002 * 109.52224 * 297.01915 * 13 12 11 40 40 H 0.96999 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7700 -0.3386 -2.4955 6 6 2.4050 -1.2380 -3.2709 7 7 3.0247 -2.1149 -2.4671 8 6 2.8026 -1.7896 -1.2230 9 6 3.3302 -2.5217 -0.0160 10 1 3.2143 -1.8953 0.8684 11 6 2.5473 -3.8235 0.1741 12 6 3.1286 -4.5903 1.3659 13 6 4.6199 -4.8395 1.1204 14 6 5.3228 -3.4984 0.8937 15 1 6.3765 -3.6726 0.6761 16 6 5.1988 -2.6503 2.1331 17 1 4.6714 -3.0289 2.9962 18 6 5.7588 -1.3906 2.1653 19 7 6.4014 -0.9298 1.1146 20 14 5.6046 -0.3390 3.7014 21 1 6.2354 -1.0414 4.8476 22 1 6.2865 0.9617 3.4813 23 1 4.1688 -0.1010 3.9962 24 8 4.7138 -2.8231 -0.2087 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.1787 0.4994 -2.8337 33 1 2.4145 -1.2506 -4.3508 34 1 1.4991 -3.5935 0.3652 35 1 2.6284 -4.4322 -0.7264 36 1 3.0019 -4.0021 2.2748 37 1 2.6122 -5.5443 1.4725 38 1 5.0539 -5.3361 1.9881 39 1 4.7437 -5.4701 0.2399 40 1 6.7951 -0.0435 1.1371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692898800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = 3.530846 kcal Electronic energy + Delta-G solvation = -21473.456103 eV Core-core repulsion = 18481.935673 eV Total energy + Delta-G solvation = -2991.520430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62806 -38.03031 -35.73901 -32.72420 -32.31561 -30.94978 -30.31844 -28.13357 -27.30070 -25.62645 -23.53948 -22.55387 -22.13050 -20.42661 -19.11442 -18.71825 -16.87966 -16.29624 -15.02183 -14.86041 -14.70319 -14.55233 -14.10237 -13.63032 -13.51978 -13.42101 -13.04570 -12.89228 -12.52854 -12.28763 -12.09335 -11.81779 -11.59110 -11.34926 -11.23340 -11.06842 -10.95327 -10.69471 -10.37847 -10.18525 -9.84887 -9.66208 -9.27016 -9.07416 -8.76808 -8.50121 -7.94760 -7.65248 -6.01435 -4.18341 2.55347 3.15882 3.21684 3.29321 3.30653 3.77182 4.34429 4.67366 4.89024 4.96589 5.11062 5.20716 5.26048 5.46779 5.54292 5.60228 5.68825 5.74481 5.78892 5.81522 5.88414 5.97449 6.11353 6.18386 6.22336 6.24187 6.39108 6.48090 6.62108 6.81601 6.89047 6.94806 7.03864 7.10983 7.32745 7.68579 7.71632 7.84735 8.18650 8.75287 8.82366 9.07629 9.53718 11.01884 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.009311 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.646247 B = 3006.418428 C = 3798.049022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 C -0.160 4.160 4 N -0.447 5.447 5 C -0.071 4.071 6 C -0.036 4.036 7 N -0.475 5.475 8 C 0.241 3.759 9 C 0.192 3.808 10 H 0.071 0.929 11 C -0.134 4.134 12 C -0.107 4.107 13 C -0.143 4.143 14 C 0.211 3.789 15 H 0.065 0.935 16 C -0.562 4.562 17 H 0.058 0.942 18 C 0.079 3.921 19 N -0.853 5.853 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.277 1.277 24 O -0.350 6.350 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 2.489 -1.606 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 C -0.218 4.218 4 N -0.131 5.131 5 C -0.204 4.204 6 C -0.185 4.185 7 N -0.193 5.193 8 C -0.022 4.022 9 C 0.131 3.869 10 H 0.089 0.911 11 C -0.173 4.173 12 C -0.145 4.145 13 C -0.181 4.181 14 C 0.155 3.845 15 H 0.082 0.918 16 C -0.600 4.600 17 H 0.076 0.924 18 C -0.127 4.127 19 N -0.489 5.489 20 Si 0.705 3.295 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.268 6.268 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.179 0.821 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.059 2.095 -2.002 11.433 hybrid contribution -0.663 1.490 1.259 2.060 sum -11.722 3.584 -0.743 12.280 Atomic orbital electron populations 1.22137 0.93670 1.02944 1.02795 1.21474 0.94916 0.94354 0.87443 1.22134 1.03007 0.94222 1.02457 1.45504 1.38746 1.22566 1.06244 1.22353 1.09855 1.04695 0.83486 1.22247 1.01627 0.95287 0.99350 1.70300 1.21985 1.27336 0.99692 1.23330 0.95308 0.88299 0.95308 1.19560 0.85730 0.92487 0.89105 0.91110 1.22079 0.98027 0.97866 0.99358 1.21442 0.96466 0.98442 0.98110 1.22189 0.95629 1.00423 0.99843 1.19779 0.92601 0.86477 0.85629 0.91753 1.21540 1.37339 1.01010 1.00085 0.92404 1.25053 0.94407 0.97907 0.95341 1.70068 1.33304 1.17490 1.28003 0.86900 0.78349 0.79972 0.84239 1.19994 1.21209 1.20205 1.88054 1.18090 1.78293 1.42371 0.91834 0.90765 0.91975 0.87574 0.91153 0.92102 0.90889 0.81913 0.82112 0.93171 0.91577 0.91352 0.93707 0.92429 0.93693 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.25 37.16 0.34 -1.40 16 2 C 0.12 1.78 3.53 -67.93 -0.24 1.54 16 3 C -0.16 -2.15 9.25 37.16 0.34 -1.81 16 4 N -0.45 -7.93 2.61 -106.83 -0.28 -8.21 16 5 C -0.07 -1.14 10.60 -16.56 -0.18 -1.32 16 6 C -0.04 -0.66 11.87 -17.81 -0.21 -0.87 16 7 N -0.48 -10.60 11.25 -10.82 -0.12 -10.72 16 8 C 0.24 5.19 6.79 -155.42 -1.06 4.14 16 9 C 0.19 4.34 2.71 -27.83 -0.08 4.26 16 10 H 0.07 1.68 5.47 -51.93 -0.28 1.39 16 11 C -0.13 -2.63 5.40 -26.59 -0.14 -2.78 16 12 C -0.11 -2.04 5.78 -26.55 -0.15 -2.19 16 13 C -0.14 -3.02 5.59 -26.59 -0.15 -3.17 16 14 C 0.21 5.37 3.16 -27.83 -0.09 5.29 16 15 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 16 C -0.56 -14.76 6.59 -34.44 -0.23 -14.98 16 17 H 0.06 1.48 6.87 -52.49 -0.36 1.12 16 18 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 19 N -0.85 -24.60 12.84 55.43 0.71 -23.89 16 20 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 O -0.35 -9.31 9.62 -35.23 -0.34 -9.65 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 28 H 0.11 1.71 6.39 -51.93 -0.33 1.38 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.72 7.95 -51.93 -0.41 0.30 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.33 6.85 -51.93 -0.36 0.98 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -31.33 320.42 -8.51 -39.84 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.37 Total: 3.77 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.93 Total: -11.25 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.31 Total: -42.82 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.34 Total: -9.65 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.33 -8.51 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692898800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.374 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds