Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48500 * 109.46839 * 265.47459 * 3 2 1 5 5 H 1.48495 * 109.47271 * 25.47745 * 3 2 1 6 6 H 1.48501 * 109.46860 * 145.47809 * 3 2 1 7 7 C 1.37876 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 6.91219 * 7 2 1 9 9 C 1.50701 * 119.99622 * 186.91230 * 7 2 1 10 10 H 1.08998 * 109.49019 * 35.13893 * 9 7 2 11 11 C 1.53059 * 109.48014 * 155.16497 * 9 7 2 12 12 C 1.53159 * 109.34321 * 60.54190 * 11 9 7 13 13 C 1.53299 * 108.99448 * 58.66588 * 12 11 9 14 14 C 1.52825 * 108.99123 * 305.18606 * 13 12 11 15 15 C 1.53482 * 113.40571 * 282.79807 * 14 13 12 16 16 C 1.53912 * 87.05012 * 270.40590 * 15 14 13 17 17 C 1.53085 * 113.57146 * 185.13658 * 14 13 12 18 18 C 1.52748 * 113.66046 * 334.87393 * 17 14 13 19 19 C 1.53130 * 109.27193 * 172.33000 * 18 17 14 20 20 C 1.52966 * 109.44948 * 57.80597 * 19 18 17 21 21 C 1.52977 * 109.67266 * 298.31246 * 20 19 18 22 22 C 1.52740 * 113.69427 * 203.85973 * 17 14 13 23 23 O 1.42599 * 112.92716 * 53.72973 * 14 13 12 24 24 H 0.97006 * 119.99901 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.49614 * 180.49708 * 11 9 7 26 26 H 1.08997 * 109.49631 * 300.55912 * 11 9 7 27 27 H 1.09000 * 109.54973 * 178.52028 * 12 11 9 28 28 H 1.08999 * 109.54703 * 298.81255 * 12 11 9 29 29 H 1.08998 * 109.54971 * 65.04486 * 13 12 11 30 30 H 1.09003 * 109.54857 * 185.23353 * 13 12 11 31 31 H 1.09001 * 113.62336 * 24.94589 * 15 14 13 32 32 H 1.09009 * 113.62034 * 155.86730 * 15 14 13 33 33 H 1.08996 * 113.61888 * 89.61247 * 16 15 14 34 34 H 1.08997 * 113.62117 * 220.54071 * 16 15 14 35 35 H 1.08997 * 109.50639 * 292.27053 * 18 17 14 36 36 H 1.09000 * 109.50282 * 52.39273 * 18 17 14 37 37 H 1.09002 * 109.47783 * 297.81476 * 19 18 17 38 38 H 1.08995 * 109.48044 * 177.80548 * 19 18 17 39 39 H 1.09011 * 109.43638 * 178.25029 * 20 19 18 40 40 H 1.08999 * 109.43813 * 58.37961 * 20 19 18 41 41 H 1.08999 * 109.47787 * 301.74382 * 21 20 19 42 42 H 1.09004 * 109.47635 * 181.71520 * 21 20 19 43 43 H 1.09005 * 109.50997 * 307.62295 * 22 17 14 44 44 H 1.09002 * 109.51165 * 67.71700 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5922 1.9912 -1.3957 5 1 1.4021 2.6784 0.6022 6 1 3.4956 1.4696 0.7935 7 6 2.0044 -1.1941 -0.0005 8 1 1.4703 -2.1259 -0.1135 9 6 3.5032 -1.1989 0.1565 10 1 3.8006 -0.3972 0.8325 11 6 3.9518 -2.5444 0.7320 12 6 3.5451 -3.6672 -0.2270 13 6 4.1921 -3.4150 -1.5936 14 6 3.8118 -2.0146 -2.0730 15 6 2.3824 -1.9264 -2.6251 16 6 2.9765 -2.2810 -3.9999 17 6 4.3012 -1.6982 -3.4886 18 6 5.5250 -2.5095 -3.9097 19 6 5.8116 -2.2588 -5.3929 20 6 6.0286 -0.7624 -5.6239 21 6 4.7592 0.0056 -5.2514 22 6 4.4547 -0.2040 -3.7653 23 8 4.1172 -0.9991 -1.1197 24 1 -0.4850 0.8401 -0.0004 25 1 5.0349 -2.5450 0.8540 26 1 3.4766 -2.7026 1.7001 27 1 3.8861 -4.6247 0.1669 28 1 2.4604 -3.6806 -0.3338 29 1 5.2759 -3.4878 -1.5031 30 1 3.8352 -4.1564 -2.3086 31 1 1.7131 -2.6899 -2.2285 32 1 1.9573 -0.9237 -2.5785 33 1 3.0171 -3.3526 -4.1949 34 1 2.5397 -1.7160 -4.8233 35 1 6.3863 -2.2038 -3.3159 36 1 5.3307 -3.5702 -3.7509 37 1 4.9653 -2.5996 -5.9893 38 1 6.7073 -2.8057 -5.6875 39 1 6.2633 -0.5877 -6.6740 40 1 6.8567 -0.4162 -5.0054 41 1 3.9242 -0.3608 -5.8486 42 1 4.9068 1.0680 -5.4459 43 1 3.5293 0.3110 -3.5073 44 1 5.2728 0.1952 -3.1657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694448603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = -52.253662 kcal Electronic energy + Delta-G solvation = -22508.838768 eV Core-core repulsion = 19618.439683 eV Total energy + Delta-G solvation = -2890.399084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60393 -37.37050 -34.59900 -32.68860 -32.35708 -30.61083 -28.94502 -28.16871 -25.51905 -23.31044 -23.11665 -21.96001 -21.55732 -20.07244 -18.79063 -17.50777 -16.29803 -15.69351 -15.30325 -14.68632 -14.27415 -13.99547 -13.74178 -13.54531 -13.36303 -12.66871 -12.56998 -12.45866 -12.34559 -12.11537 -11.95927 -11.62650 -11.43486 -11.15524 -10.78322 -10.76084 -10.61372 -10.47885 -10.25427 -10.24888 -10.11675 -9.88591 -9.78308 -9.51853 -9.35675 -8.90861 -8.73720 -8.48158 -7.90934 -6.09160 -4.11833 3.36993 3.42094 3.49467 4.46216 4.71149 4.90328 4.99351 5.09254 5.31710 5.37885 5.42749 5.58947 5.62388 5.69208 5.69956 5.83333 5.85699 5.88754 5.90423 5.96422 6.08801 6.14428 6.20939 6.24856 6.30221 6.32566 6.35714 6.43609 6.46349 6.47934 6.61288 6.62979 6.77029 6.82618 6.88698 6.91351 6.93588 7.10762 7.18977 7.36059 7.47960 7.70343 8.40301 8.77943 8.95678 9.55398 11.01746 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.008965 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.305027 B = 3122.625420 C = 3757.369727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.079 0.921 9 C 0.165 3.835 10 H 0.067 0.933 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.116 4.116 14 C 0.124 3.876 15 C -0.117 4.117 16 C -0.146 4.146 17 C -0.059 4.059 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.085 4.085 23 O -0.386 6.386 24 H 0.263 0.737 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -4.194 -8.530 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.709 3.291 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.096 0.904 9 C 0.110 3.890 10 H 0.084 0.916 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.153 4.153 14 C 0.084 3.916 15 C -0.155 4.155 16 C -0.184 4.184 17 C -0.059 4.059 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.123 4.123 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.745 -3.927 -8.558 13.551 hybrid contribution 0.138 0.683 0.140 0.711 sum 9.883 -3.244 -8.418 13.382 Atomic orbital electron populations 1.69946 1.06371 1.27035 1.49706 1.25003 0.94512 0.99093 0.93504 0.86810 0.79774 0.83310 0.79185 1.19759 1.22387 1.19188 1.21441 0.89954 0.94729 1.50321 0.90352 1.20391 0.93373 0.92980 0.82245 0.91554 1.21967 0.98436 0.97625 0.98853 1.21508 1.01764 0.96958 0.94776 1.21741 0.99768 0.96506 0.97327 1.21989 0.94877 0.87689 0.87091 1.23239 0.96964 1.02954 0.92354 1.23040 0.96946 0.99525 0.98852 1.21657 0.93821 0.95501 0.94902 1.21501 0.97874 0.99401 0.95246 1.21502 1.00683 0.96001 0.97091 1.21492 0.98166 0.95607 1.00133 1.21575 0.97475 0.99202 0.97424 1.21093 1.02454 0.94297 0.94407 1.87824 1.73170 1.46326 1.23286 0.92728 0.94150 0.92129 0.93886 0.90753 0.92486 0.92216 0.91984 0.89146 0.91228 0.92110 0.92224 0.91992 0.92193 0.92811 0.92886 0.92311 0.92241 0.92626 0.91419 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.28 5.27 -17.82 -0.09 2.19 16 3 Si 0.88 21.97 27.32 -169.99 -4.64 17.33 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.50 6.12 56.52 0.35 -6.15 16 7 C -0.53 -13.91 5.88 -34.44 -0.20 -14.11 16 8 H 0.08 2.23 5.82 -52.49 -0.31 1.92 16 9 C 0.17 3.89 2.64 -27.85 -0.07 3.82 16 10 H 0.07 1.63 5.81 -51.93 -0.30 1.33 16 11 C -0.13 -2.66 5.60 -26.62 -0.15 -2.80 16 12 C -0.11 -2.10 5.71 -26.49 -0.15 -2.25 16 13 C -0.12 -2.03 3.82 -26.67 -0.10 -2.13 16 14 C 0.12 2.42 0.93 -90.42 -0.08 2.33 16 15 C -0.12 -2.42 4.76 -26.01 -0.12 -2.54 16 16 C -0.15 -2.42 6.46 -26.00 -0.17 -2.59 16 17 C -0.06 -0.98 0.70 -154.48 -0.11 -1.09 16 18 C -0.10 -1.46 4.20 -26.79 -0.11 -1.57 16 19 C -0.12 -1.40 5.84 -26.68 -0.16 -1.56 16 20 C -0.12 -1.42 5.86 -26.76 -0.16 -1.58 16 21 C -0.12 -1.65 5.84 -26.68 -0.16 -1.81 16 22 C -0.09 -1.46 4.36 -26.80 -0.12 -1.58 16 23 O -0.39 -8.78 9.09 -35.23 -0.32 -9.10 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.53 5.86 -51.93 -0.30 1.23 16 29 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 30 H 0.06 0.95 6.99 -51.93 -0.36 0.59 16 31 H 0.06 1.35 7.05 -51.93 -0.37 0.98 16 32 H 0.09 2.16 7.03 -51.92 -0.37 1.80 16 33 H 0.07 1.05 7.56 -51.93 -0.39 0.66 16 34 H 0.06 0.97 7.35 -51.93 -0.38 0.59 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.84 6.72 -51.93 -0.35 0.49 16 37 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.81 7.37 -51.93 -0.38 0.43 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.33 7.34 -51.93 -0.38 0.95 16 44 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -27.89 310.59 -9.16 -37.05 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.69 Total: 2.81 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -1.95 Total: -27.27 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.50 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.32 Total: -9.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.64 Total: 17.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.89 -9.16 -37.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694448603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.201 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds