Wall clock time and date at job start Mon Mar 30 2020 07:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.09000 * 109.47733 * 59.99356 * 9 7 2 11 11 C 1.53047 * 109.47104 * 180.02562 * 9 7 2 12 12 C 1.53160 * 109.40627 * 179.28398 * 11 9 7 13 13 C 1.53303 * 108.97560 * 301.40424 * 12 11 9 14 14 C 1.52846 * 108.91333 * 54.93991 * 13 12 11 15 15 C 1.53514 * 113.32638 * 76.69234 * 14 13 12 16 16 C 1.53905 * 87.02551 * 89.66247 * 15 14 13 17 17 C 1.53012 * 113.66522 * 174.37355 * 14 13 12 18 18 C 1.52760 * 113.75232 * 156.27785 * 17 14 13 19 19 C 1.53135 * 109.22559 * 172.04005 * 18 17 14 20 20 C 1.52972 * 109.44029 * 57.88415 * 19 18 17 21 21 C 1.52975 * 109.69963 * 298.34220 * 20 19 18 22 22 C 1.52744 * 113.75239 * 25.17767 * 17 14 13 23 23 O 1.42601 * 112.86367 * 305.97332 * 14 13 12 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.48374 * 299.26275 * 11 9 7 26 26 H 1.08999 * 109.48610 * 59.30349 * 11 9 7 27 27 H 1.09000 * 109.54955 * 61.25444 * 12 11 9 28 28 H 1.08999 * 109.54980 * 181.55250 * 12 11 9 29 29 H 1.09008 * 109.56515 * 174.76787 * 13 12 11 30 30 H 1.09000 * 109.57025 * 294.99290 * 13 12 11 31 31 H 1.09001 * 113.61754 * 204.19073 * 15 14 13 32 32 H 1.08997 * 113.62628 * 335.12373 * 15 14 13 33 33 H 1.08997 * 113.62231 * 270.40530 * 16 15 14 34 34 H 1.09000 * 113.62680 * 139.46976 * 16 15 14 35 35 H 1.08999 * 109.51476 * 291.96824 * 18 17 14 36 36 H 1.09001 * 109.50927 * 52.11628 * 18 17 14 37 37 H 1.09004 * 109.47720 * 297.89683 * 19 18 17 38 38 H 1.08999 * 109.48238 * 177.88280 * 19 18 17 39 39 H 1.09003 * 109.43137 * 178.26956 * 20 19 18 40 40 H 1.08996 * 109.39378 * 58.38786 * 20 19 18 41 41 H 1.09002 * 109.47257 * 301.66208 * 21 20 19 42 42 H 1.08998 * 109.47911 * 181.64561 * 21 20 19 43 43 H 1.09007 * 109.51313 * 307.88249 * 22 17 14 44 44 H 1.09002 * 109.51520 * 67.98387 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6278 -2.5590 -0.8866 11 6 2.2453 -3.6625 0.0134 12 6 1.4778 -4.9878 0.0315 13 6 0.5804 -5.0273 1.2737 14 6 -0.3139 -3.7879 1.2785 15 6 -1.4869 -3.8809 0.2925 16 6 -2.2945 -4.5172 1.4377 17 6 -1.3522 -3.7839 2.4025 18 6 -1.8410 -2.3878 2.7837 19 6 -3.0090 -2.5132 3.7660 20 6 -2.5563 -3.2998 4.9975 21 6 -2.1341 -4.7102 4.5819 22 6 -0.9507 -4.6234 3.6137 23 8 0.4235 -2.5721 1.1704 24 1 -0.4851 -0.8400 -0.0004 25 1 2.8674 -3.6149 -0.8803 26 1 2.8762 -3.5957 0.8997 27 1 0.8631 -5.0656 -0.8653 28 1 2.1838 -5.8177 0.0647 29 1 -0.0388 -5.9241 1.2484 30 1 1.1992 -5.0364 2.1710 31 1 -1.8689 -2.9105 -0.0245 32 1 -1.3038 -4.5581 -0.5417 33 1 -2.2075 -5.6028 1.4829 34 1 -3.3271 -4.1717 1.4886 35 1 -1.0285 -1.8331 3.2530 36 1 -2.1728 -1.8613 1.8888 37 1 -3.8348 -3.0364 3.2839 38 1 -3.3367 -1.5191 4.0700 39 1 -3.3787 -3.3626 5.7101 40 1 -1.7120 -2.7906 5.4620 41 1 -2.9694 -5.2097 4.0911 42 1 -1.8401 -5.2767 5.4654 43 1 -0.6739 -5.6256 3.2865 44 1 -0.1027 -4.1569 4.1152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694448614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:25 Heat of formation + Delta-G solvation = -64.348447 kcal Electronic energy + Delta-G solvation = -22235.438769 eV Core-core repulsion = 19344.515215 eV Total energy + Delta-G solvation = -2890.923554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68600 -37.28751 -34.77415 -32.90033 -32.23137 -30.58634 -28.68385 -28.24749 -25.04926 -23.42884 -22.79197 -22.39090 -21.48787 -20.35597 -18.99823 -17.12497 -16.94659 -15.76333 -15.32193 -14.61439 -14.20185 -13.86345 -13.78683 -13.67887 -13.40029 -13.14647 -12.70075 -12.54486 -12.21409 -11.97073 -11.85208 -11.47721 -11.29688 -11.05704 -10.79262 -10.75015 -10.68046 -10.46608 -10.39492 -10.31004 -10.12651 -10.05519 -9.97876 -9.71127 -9.51132 -8.93836 -8.49373 -8.29814 -7.97837 -6.28999 -4.06974 3.45600 3.50371 3.65839 4.55470 4.71353 4.85524 4.93121 5.11400 5.24796 5.30833 5.34028 5.43003 5.55000 5.62518 5.66811 5.69408 5.72980 5.83876 5.87933 5.92422 5.97091 6.02048 6.11369 6.13804 6.23816 6.26902 6.27977 6.34768 6.41174 6.42594 6.50025 6.52534 6.65496 6.66558 6.73337 6.77768 6.83067 6.92642 7.08583 7.11453 7.39084 8.18476 8.45218 8.86781 8.98863 9.75174 11.11857 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.007786 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.387318 B = 3595.413461 C = 4428.897970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.034 3.966 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.602 4.602 8 H 0.054 0.946 9 C 0.205 3.795 10 H 0.005 0.995 11 C -0.136 4.136 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.098 3.902 15 C -0.160 4.160 16 C -0.132 4.132 17 C -0.053 4.053 18 C -0.082 4.082 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.103 4.103 23 O -0.351 6.351 24 H 0.281 0.719 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -9.833 5.775 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.175 4.175 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.072 0.928 9 C 0.150 3.850 10 H 0.022 0.978 11 C -0.174 4.174 12 C -0.159 4.159 13 C -0.156 4.156 14 C 0.057 3.943 15 C -0.198 4.198 16 C -0.169 4.169 17 C -0.053 4.053 18 C -0.120 4.120 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.141 4.141 23 O -0.270 6.270 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.867 -8.051 5.908 11.109 hybrid contribution 0.312 -1.997 -0.245 2.036 sum -4.555 -10.048 5.663 12.401 Atomic orbital electron populations 1.70616 1.06848 1.31944 1.43032 1.25778 0.96613 1.02381 0.92734 0.83570 0.74816 0.75282 0.76617 1.21515 1.20974 1.21523 1.21902 0.93802 0.90827 1.57413 0.92768 1.19820 0.87267 0.93386 0.84521 0.97781 1.22098 0.99377 0.94857 1.01073 1.21646 0.98267 0.98349 0.97619 1.21779 0.98066 0.97098 0.98613 1.22331 0.89540 0.87780 0.94697 1.23489 0.98386 1.01135 0.96796 1.22840 0.98193 0.98807 0.97071 1.21584 0.94952 0.95855 0.92937 1.21065 0.97221 0.94590 0.99078 1.21570 0.98452 0.99485 0.96060 1.21502 1.00458 0.96013 0.97540 1.21499 0.98403 0.96762 0.98509 1.21497 0.97678 0.99244 0.95662 1.88363 1.59229 1.32567 1.46873 0.90680 0.92602 0.92562 0.92703 0.93100 0.92278 0.91661 0.89536 0.92486 0.90913 0.91663 0.91131 0.91262 0.92571 0.92389 0.92864 0.92130 0.92344 0.92746 0.92180 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.53 55.43 0.75 -26.04 16 2 C 0.03 0.97 5.40 -17.82 -0.10 0.87 16 3 Si 1.07 25.46 29.90 -169.99 -5.08 20.38 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.27 8.79 -34.44 -0.30 -17.57 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.21 5.28 2.00 -27.86 -0.06 5.22 16 10 H 0.00 0.13 7.68 -51.93 -0.40 -0.27 16 11 C -0.14 -2.96 5.30 -26.62 -0.14 -3.10 16 12 C -0.12 -2.18 5.94 -26.49 -0.16 -2.34 16 13 C -0.12 -2.04 3.82 -26.65 -0.10 -2.14 16 14 C 0.10 1.90 0.97 -90.43 -0.09 1.81 16 15 C -0.16 -2.94 6.51 -25.99 -0.17 -3.11 16 16 C -0.13 -2.01 6.43 -26.00 -0.17 -2.18 16 17 C -0.05 -0.89 0.70 -154.49 -0.11 -1.00 16 18 C -0.08 -1.49 4.37 -26.78 -0.12 -1.61 16 19 C -0.12 -1.71 5.83 -26.68 -0.16 -1.87 16 20 C -0.12 -1.52 5.86 -26.76 -0.16 -1.68 16 21 C -0.11 -1.43 5.84 -26.67 -0.16 -1.58 16 22 C -0.10 -1.52 4.23 -26.79 -0.11 -1.63 16 23 O -0.35 -8.71 8.01 -35.23 -0.28 -8.99 16 24 H 0.28 8.45 6.47 -40.82 -0.26 8.18 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.97 7.57 -51.93 -0.39 0.58 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.89 6.97 -51.92 -0.36 0.53 16 30 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 31 H 0.09 1.78 7.64 -51.93 -0.40 1.39 16 32 H 0.06 0.99 7.52 -51.93 -0.39 0.60 16 33 H 0.07 1.00 7.56 -51.93 -0.39 0.60 16 34 H 0.06 0.94 7.32 -51.93 -0.38 0.56 16 35 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.07 1.42 7.34 -51.93 -0.38 1.04 16 37 H 0.06 0.77 7.35 -51.93 -0.38 0.38 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.82 6.72 -51.92 -0.35 0.47 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -29.75 321.50 -9.76 -39.51 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.90 Total: 2.19 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -2.09 Total: -31.90 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.75 Total: -26.04 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.28 Total: -8.99 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.75 -9.76 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694448614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.840 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds