Wall clock time and date at job start Mon Mar 30 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47333 * 299.99441 * 9 7 2 11 11 C 1.53039 * 109.47316 * 179.97438 * 9 7 2 12 12 C 1.53150 * 109.42085 * 180.73901 * 11 9 7 13 13 C 1.53319 * 108.98438 * 58.55523 * 12 11 9 14 14 C 1.52834 * 108.89251 * 305.06706 * 13 12 11 15 15 C 1.53527 * 113.31627 * 283.41775 * 14 13 12 16 16 C 1.53895 * 87.02698 * 220.25091 * 15 14 13 17 17 C 1.53008 * 113.71052 * 185.72769 * 14 13 12 18 18 C 1.52756 * 113.74618 * 25.00653 * 17 14 13 19 19 C 1.53144 * 109.21613 * 171.98398 * 18 17 14 20 20 C 1.52968 * 109.43912 * 57.88610 * 19 18 17 21 21 C 1.52970 * 109.70379 * 298.34928 * 20 19 18 22 22 C 1.52745 * 113.77641 * 253.87827 * 17 14 13 23 23 O 1.42606 * 112.86528 * 54.08163 * 14 13 12 24 24 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47773 * 300.72030 * 11 9 7 26 26 H 1.08999 * 109.48661 * 60.75028 * 11 9 7 27 27 H 1.09001 * 109.54635 * 298.70609 * 12 11 9 28 28 H 1.08994 * 109.55212 * 178.41017 * 12 11 9 29 29 H 1.09004 * 109.56434 * 185.24601 * 13 12 11 30 30 H 1.09004 * 109.66402 * 64.95328 * 13 12 11 31 31 H 1.09000 * 113.62504 * 334.78761 * 15 14 13 32 32 H 1.09005 * 113.61960 * 105.71510 * 15 14 13 33 33 H 1.08999 * 113.62494 * 270.42078 * 16 15 14 34 34 H 1.08998 * 113.70689 * 139.48722 * 16 15 14 35 35 H 1.08995 * 109.51853 * 291.91319 * 18 17 14 36 36 H 1.09001 * 109.51472 * 52.06713 * 18 17 14 37 37 H 1.08997 * 109.47801 * 297.89445 * 19 18 17 38 38 H 1.09002 * 109.48178 * 177.87515 * 19 18 17 39 39 H 1.09003 * 109.43363 * 178.27572 * 20 19 18 40 40 H 1.09004 * 109.39398 * 58.40049 * 20 19 18 41 41 H 1.09001 * 109.47408 * 301.65410 * 21 20 19 42 42 H 1.09001 * 109.47510 * 181.63933 * 21 20 19 43 43 H 1.08996 * 109.51449 * 307.91299 * 22 17 14 44 44 H 1.08999 * 109.51437 * 68.02353 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5572 0.8897 11 6 2.2456 -3.6624 -0.0018 12 6 1.4787 -4.9880 -0.0205 13 6 0.5855 -5.0300 -1.2659 14 6 -0.3089 -3.7908 -1.2754 15 6 -1.4836 -3.8816 -0.2910 16 6 -2.3450 -3.2222 -1.3826 17 6 -1.3455 -3.7888 -2.4008 18 6 -1.7143 -5.1846 -2.8999 19 6 -2.8919 -5.0772 -3.8730 20 6 -2.5119 -4.1541 -5.0321 21 6 -2.2102 -2.7528 -4.4979 22 6 -1.0206 -2.8193 -3.5356 23 8 0.4280 -2.5746 -1.1680 24 1 -0.4849 -0.8401 0.0004 25 1 2.8801 -3.5971 -0.8858 26 1 2.8642 -3.6129 0.8943 27 1 0.8609 -5.0645 0.8743 28 1 2.1850 -5.8176 -0.0499 29 1 -0.0335 -5.9268 -1.2410 30 1 1.2059 -5.0394 -2.1621 31 1 -1.7806 -4.9043 -0.0586 32 1 -1.3571 -3.2639 0.5981 33 1 -2.3510 -2.1333 -1.3359 34 1 -3.3448 -3.6478 -1.4686 35 1 -0.8589 -5.6265 -3.4108 36 1 -1.9972 -5.8109 -2.0538 37 1 -3.7578 -4.6688 -3.3520 38 1 -3.1344 -6.0666 -4.2609 39 1 -3.3389 -4.1019 -5.7403 40 1 -1.6287 -4.5487 -5.5345 41 1 -3.0834 -2.3692 -3.9703 42 1 -1.9683 -2.0911 -5.3296 43 1 -0.8293 -1.8283 -3.1242 44 1 -0.1375 -3.1681 -4.0708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694448622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:28 Heat of formation + Delta-G solvation = -63.413856 kcal Electronic energy + Delta-G solvation = -22228.090104 eV Core-core repulsion = 19337.207077 eV Total energy + Delta-G solvation = -2890.883027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64005 -37.32303 -34.65141 -32.98139 -32.21038 -30.51241 -28.88376 -28.26653 -25.27640 -23.14624 -22.91253 -22.13361 -21.56507 -20.35032 -19.02656 -17.30141 -17.07481 -15.66189 -15.02348 -14.56443 -14.10927 -13.95393 -13.77932 -13.72292 -13.56906 -13.19588 -12.89133 -12.35625 -12.28104 -12.01287 -11.83921 -11.55565 -11.26521 -11.01951 -10.82789 -10.78469 -10.70764 -10.45266 -10.31935 -10.23627 -10.12598 -10.10220 -9.96499 -9.67525 -9.52401 -8.88490 -8.53771 -8.30051 -7.97449 -6.31315 -4.09664 3.44776 3.49428 3.64973 4.51284 4.60858 4.84801 4.98897 5.14402 5.21984 5.33683 5.39903 5.45459 5.55755 5.59122 5.65205 5.68852 5.77548 5.82706 5.84544 5.90502 5.97646 6.05181 6.13101 6.18773 6.21857 6.27451 6.29190 6.31820 6.39710 6.45234 6.47961 6.55218 6.67296 6.71929 6.74946 6.77817 6.82300 6.92888 7.08991 7.15209 7.37729 8.15540 8.43155 8.83621 8.95824 9.72407 11.09545 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.007458 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.508657 B = 3753.693514 C = 4498.760027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.033 3.967 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.601 4.601 8 H 0.055 0.945 9 C 0.204 3.796 10 H 0.006 0.994 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.129 4.129 14 C 0.104 3.896 15 C -0.167 4.167 16 C -0.120 4.120 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.094 4.094 23 O -0.342 6.342 24 H 0.282 0.718 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -10.063 -5.738 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.175 4.175 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.073 0.927 9 C 0.150 3.850 10 H 0.023 0.977 11 C -0.174 4.174 12 C -0.158 4.158 13 C -0.167 4.167 14 C 0.063 3.937 15 C -0.205 4.205 16 C -0.157 4.157 17 C -0.062 4.062 18 C -0.128 4.128 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.131 4.131 23 O -0.262 6.262 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.834 -8.281 -5.871 11.243 hybrid contribution 0.310 -1.983 0.247 2.022 sum -4.524 -10.264 -5.624 12.548 Atomic orbital electron populations 1.70621 1.06864 1.31990 1.42938 1.25797 0.96600 1.02439 0.92691 0.83564 0.74814 0.75228 0.76652 1.21486 1.20956 1.21488 1.21904 0.93853 0.90713 1.57382 0.92664 1.19871 0.87276 0.93501 0.84399 0.97667 1.22087 0.99344 0.94884 1.01070 1.21627 0.98272 0.98190 0.97700 1.21968 0.98469 0.97894 0.98320 1.21937 0.89607 0.87614 0.94563 1.23450 0.98585 0.99912 0.98572 1.22826 0.96173 1.01079 0.95624 1.21555 0.95743 0.94946 0.93943 1.21294 0.97807 0.95424 0.98290 1.21514 0.98371 0.98871 0.96561 1.21502 1.00591 0.96068 0.97270 1.21549 0.99217 0.95997 0.98784 1.21263 0.96410 1.00484 0.94972 1.88345 1.58880 1.32333 1.46595 0.90644 0.92560 0.92598 0.92750 0.93259 0.92206 0.92129 0.91083 0.91278 0.89474 0.92614 0.91953 0.92135 0.92057 0.92594 0.92802 0.92385 0.92223 0.92612 0.90208 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.53 55.43 0.75 -25.99 16 2 C 0.03 0.96 5.40 -17.82 -0.10 0.86 16 3 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.60 -17.16 8.79 -34.44 -0.30 -17.46 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.20 5.24 1.98 -27.86 -0.06 5.18 16 10 H 0.01 0.16 7.03 -51.93 -0.37 -0.21 16 11 C -0.14 -2.96 5.30 -26.63 -0.14 -3.10 16 12 C -0.12 -2.17 5.95 -26.49 -0.16 -2.33 16 13 C -0.13 -2.25 4.38 -26.65 -0.12 -2.36 16 14 C 0.10 2.03 0.85 -90.43 -0.08 1.95 16 15 C -0.17 -3.08 6.71 -25.99 -0.17 -3.25 16 16 C -0.12 -2.10 6.72 -26.00 -0.17 -2.28 16 17 C -0.06 -1.04 0.67 -154.49 -0.10 -1.14 16 18 C -0.09 -1.25 3.71 -26.78 -0.10 -1.35 16 19 C -0.12 -1.39 5.83 -26.67 -0.16 -1.55 16 20 C -0.12 -1.43 5.86 -26.76 -0.16 -1.59 16 21 C -0.12 -1.70 5.84 -26.67 -0.16 -1.86 16 22 C -0.09 -1.66 4.72 -26.79 -0.13 -1.78 16 23 O -0.34 -8.44 7.60 -35.23 -0.27 -8.70 16 24 H 0.28 8.45 6.47 -40.82 -0.26 8.19 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.90 6.75 -51.93 -0.35 0.55 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.14 7.51 -51.93 -0.39 0.74 16 32 H 0.07 1.44 7.22 -51.93 -0.37 1.06 16 33 H 0.09 1.77 8.06 -51.93 -0.42 1.35 16 34 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 35 H 0.06 0.85 7.79 -51.93 -0.40 0.44 16 36 H 0.06 0.80 6.85 -51.93 -0.36 0.44 16 37 H 0.06 0.75 7.34 -51.93 -0.38 0.36 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.71 7.49 -51.93 -0.39 1.32 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -29.54 321.97 -9.76 -39.29 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.91 Total: 2.33 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: -2.09 Total: -32.06 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.99 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.27 Total: -8.70 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.54 -9.76 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694448622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.122 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds