Wall clock time and date at job start Mon Mar 30 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.82427 * 2 1 4 4 H 1.07993 * 120.00250 * 120.56044 * 3 2 1 5 5 C 1.37879 * 119.99641 * 300.55873 * 3 2 1 6 6 N 1.31518 * 120.00042 * 179.97438 * 5 3 2 7 7 Si 1.86807 * 120.00137 * 0.02562 * 5 3 2 8 8 H 1.48497 * 109.46962 * 89.99978 * 7 5 3 9 9 H 1.48498 * 109.46736 * 210.00154 * 7 5 3 10 10 H 1.48500 * 109.46802 * 329.99724 * 7 5 3 11 11 C 1.54462 * 109.90567 * 120.93197 * 2 1 3 12 12 C 1.55464 * 102.34440 * 140.90409 * 11 2 1 13 13 C 1.54107 * 100.80194 * 326.74974 * 12 11 2 14 14 C 1.52986 * 114.90284 * 265.75622 * 13 12 11 15 15 C 1.53999 * 86.84734 * 267.77268 * 14 13 12 16 16 C 1.52517 * 115.24314 * 165.72514 * 13 12 11 17 17 C 1.52783 * 113.98274 * 337.58529 * 16 13 12 18 18 C 1.53132 * 109.23114 * 171.53579 * 17 16 13 19 19 C 1.52972 * 109.44529 * 57.91179 * 18 17 16 20 20 C 1.52972 * 109.67873 * 298.33455 * 19 18 17 21 21 C 1.52786 * 113.96654 * 206.11569 * 16 13 12 22 22 O 1.42673 * 106.31696 * 35.36026 * 13 12 11 23 23 H 1.09008 * 109.47108 * 179.43538 * 1 2 3 24 24 H 1.08996 * 109.47580 * 299.44157 * 1 2 3 25 25 H 1.09002 * 109.46767 * 59.44371 * 1 2 3 26 26 H 0.96993 * 119.99960 * 179.97438 * 6 5 3 27 27 H 1.08996 * 110.83277 * 259.12341 * 11 2 1 28 28 H 1.08998 * 110.82819 * 22.49592 * 11 2 1 29 29 H 1.09002 * 111.15190 * 208.86124 * 12 11 2 30 30 H 1.09000 * 111.15185 * 84.63140 * 12 11 2 31 31 H 1.08993 * 113.65012 * 22.26219 * 14 13 12 32 32 H 1.09001 * 113.65067 * 153.28435 * 14 13 12 33 33 H 1.09003 * 113.60658 * 90.00577 * 15 14 13 34 34 H 1.09001 * 113.60608 * 220.87631 * 15 14 13 35 35 H 1.08994 * 109.50819 * 291.46574 * 17 16 13 36 36 H 1.09002 * 109.50876 * 51.61455 * 17 16 13 37 37 H 1.09003 * 109.47603 * 297.92285 * 18 17 16 38 38 H 1.08998 * 109.48261 * 177.90339 * 18 17 16 39 39 H 1.09002 * 109.43854 * 178.27694 * 19 18 17 40 40 H 1.09001 * 109.43921 * 58.39915 * 19 18 17 41 41 H 1.08995 * 109.48326 * 301.67930 * 20 19 18 42 42 H 1.09004 * 109.48461 * 181.65936 * 20 19 18 43 43 H 1.08998 * 109.50618 * 308.40671 * 21 16 13 44 44 H 1.09000 * 109.50826 * 68.55482 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6716 1.7644 0.8053 5 6 1.7038 2.2721 -1.0283 6 7 2.1493 3.5095 -1.0281 7 14 0.6126 1.6725 -2.4210 8 1 -0.8103 1.9229 -2.0779 9 1 0.9568 2.4012 -3.6682 10 1 0.8242 0.2167 -2.6238 11 6 2.0559 -0.7465 1.2458 12 6 3.2773 -1.5224 0.6773 13 6 2.7885 -1.8226 -0.7530 14 6 2.1203 -3.1871 -0.9323 15 6 3.5122 -3.7234 -1.3154 16 6 3.8682 -2.2862 -1.7254 17 6 5.2839 -1.8764 -1.3230 18 6 6.2910 -2.5686 -2.2458 19 6 5.9945 -2.1903 -3.6981 20 6 4.5938 -2.6720 -4.0802 21 6 3.5568 -1.9814 -3.1898 22 8 2.0169 -0.6931 -1.1583 23 1 -0.3634 -1.0277 -0.0101 24 1 -0.3634 0.5051 0.8949 25 1 -0.3633 0.5225 -0.8850 26 1 1.9123 4.1103 -1.7516 27 1 2.3687 -0.0421 2.0165 28 1 1.3029 -1.4329 1.6329 29 1 3.4526 -2.4428 1.2344 30 1 4.1697 -0.8965 0.6647 31 1 1.7295 -3.6077 -0.0059 32 1 1.4000 -3.2172 -1.7498 33 1 4.0878 -4.0901 -0.4655 34 1 3.4954 -4.4240 -2.1502 35 1 5.3897 -0.7954 -1.4142 36 1 5.4701 -2.1754 -0.2915 37 1 6.2091 -3.6491 -2.1278 38 1 7.3005 -2.2501 -1.9863 39 1 6.7300 -2.6585 -4.3523 40 1 6.0485 -1.1073 -3.8092 41 1 4.5302 -3.7513 -3.9421 42 1 4.3972 -2.4270 -5.1240 43 1 2.5616 -2.3522 -3.4351 44 1 3.5956 -0.9045 -3.3537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694453497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:44 Heat of formation + Delta-G solvation = -38.413109 kcal Electronic energy + Delta-G solvation = -22364.990850 eV Core-core repulsion = 19475.191937 eV Total energy + Delta-G solvation = -2889.798913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70891 -37.62093 -34.95444 -32.40601 -31.39453 -30.56727 -29.54675 -28.31068 -25.16192 -24.12307 -23.18392 -22.25529 -21.48728 -19.73374 -19.34013 -17.45643 -16.79078 -15.85661 -15.19448 -14.74754 -14.40867 -13.96876 -13.68050 -13.57096 -13.09003 -12.88371 -12.67079 -12.36144 -12.21690 -12.04424 -11.95502 -11.53958 -11.36828 -11.24373 -11.06979 -10.79749 -10.71842 -10.57787 -10.44896 -10.31374 -10.07934 -9.89039 -9.85363 -9.74896 -9.40493 -9.11681 -8.85934 -8.48071 -8.01672 -6.03991 -4.10459 3.40266 3.50274 3.73501 4.57850 4.63663 4.80810 4.91039 5.10108 5.18737 5.21490 5.34471 5.43226 5.50091 5.59185 5.64083 5.65654 5.77000 5.82158 5.88145 5.95470 5.99025 6.02064 6.05523 6.19866 6.23887 6.24437 6.30981 6.33614 6.38000 6.46963 6.51212 6.55313 6.60352 6.65110 6.69433 6.72210 6.78801 6.84649 6.95282 7.08910 7.32914 7.77668 8.41956 8.56735 8.97344 9.62505 11.07073 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.008687 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.776075 B = 3222.312094 C = 3662.539732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.192 3.808 3 C -0.518 4.518 4 H 0.074 0.926 5 C 0.084 3.916 6 N -0.896 5.896 7 Si 0.878 3.122 8 H -0.291 1.291 9 H -0.305 1.305 10 H -0.222 1.222 11 C -0.130 4.130 12 C -0.122 4.122 13 C 0.097 3.903 14 C -0.153 4.153 15 C -0.131 4.131 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.087 4.087 22 O -0.351 6.351 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.263 0.737 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 -14.486 -1.724 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.154 3.846 3 C -0.555 4.555 4 H 0.092 0.908 5 C -0.119 4.119 6 N -0.534 5.534 7 Si 0.709 3.291 8 H -0.219 1.219 9 H -0.233 1.233 10 H -0.145 1.145 11 C -0.167 4.167 12 C -0.160 4.160 13 C 0.056 3.944 14 C -0.191 4.191 15 C -0.168 4.168 16 C -0.061 4.061 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.125 4.125 22 O -0.271 6.271 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.243 -14.261 -2.009 15.014 hybrid contribution -0.624 -0.087 -0.523 0.819 sum 3.618 -14.348 -2.532 15.012 Atomic orbital electron populations 1.22304 0.98079 0.98859 1.01200 1.20100 0.90073 0.92326 0.82065 1.21098 1.32709 0.92195 1.09502 0.90753 1.24990 0.95122 0.94240 0.97552 1.69929 1.44956 1.05593 1.32934 0.87048 0.79206 0.81987 0.80870 1.21863 1.23291 1.14513 1.23019 0.96218 0.98194 0.99306 1.22784 0.99338 0.99359 0.94516 1.22755 0.91306 0.87249 0.93100 1.23366 0.96686 0.97876 1.01187 1.22851 0.97218 0.96226 1.00546 1.21644 0.94264 0.94615 0.95552 1.21499 0.93320 1.01006 0.98326 1.21500 0.98465 1.00101 0.95111 1.21505 0.96552 1.01310 0.96270 1.21550 0.95109 0.99895 0.98893 1.21133 0.97760 1.01386 0.92195 1.88685 1.67775 1.38444 1.32157 0.94897 0.92275 0.93656 0.92762 0.90857 0.92953 0.92066 0.90201 0.92088 0.90185 0.90667 0.91736 0.91260 0.91983 0.92460 0.92590 0.92832 0.91911 0.92492 0.92552 0.92115 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.24 37.16 0.31 -2.96 16 2 C 0.19 4.49 0.79 -91.00 -0.07 4.42 16 3 C -0.52 -14.53 8.84 -34.44 -0.30 -14.84 16 4 H 0.07 2.25 7.73 -52.49 -0.41 1.84 16 5 C 0.08 2.47 5.45 -17.82 -0.10 2.37 16 6 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 7 Si 0.88 22.74 23.92 -169.99 -4.07 18.68 16 8 H -0.29 -7.40 6.87 56.52 0.39 -7.02 16 9 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 10 H -0.22 -5.55 5.36 56.52 0.30 -5.25 16 11 C -0.13 -2.56 6.09 -24.66 -0.15 -2.71 16 12 C -0.12 -2.17 5.18 -24.84 -0.13 -2.30 16 13 C 0.10 1.78 1.20 -90.30 -0.11 1.67 16 14 C -0.15 -2.42 7.23 -26.22 -0.19 -2.61 16 15 C -0.13 -1.80 6.58 -25.89 -0.17 -1.97 16 16 C -0.06 -0.97 0.73 -154.65 -0.11 -1.08 16 17 C -0.10 -1.56 4.07 -26.77 -0.11 -1.67 16 18 C -0.11 -1.43 5.84 -26.68 -0.16 -1.59 16 19 C -0.12 -1.51 5.87 -26.76 -0.16 -1.66 16 20 C -0.12 -1.55 5.83 -26.68 -0.16 -1.70 16 21 C -0.09 -1.43 4.55 -26.77 -0.12 -1.56 16 22 O -0.35 -8.07 6.89 -35.23 -0.24 -8.31 16 23 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.04 1.07 3.23 -51.93 -0.17 0.90 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 27 H 0.07 1.47 7.60 -51.93 -0.39 1.08 16 28 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 29 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 30 H 0.08 1.49 6.87 -51.93 -0.36 1.13 16 31 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.08 1.30 7.69 -51.93 -0.40 0.91 16 33 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.06 0.81 7.29 -51.93 -0.38 0.43 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.88 6.85 -51.93 -0.36 0.52 16 37 H 0.06 0.67 7.94 -51.93 -0.41 0.25 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.02 7.39 -51.93 -0.38 0.63 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -30.18 316.00 -8.43 -38.61 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.93 Total: 1.41 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -1.73 Total: -28.18 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.77 Total: -26.97 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.24 Total: -8.31 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.07 Total: 18.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.18 -8.43 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694453497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.196 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds