Wall clock time and date at job start Mon Mar 30 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47102 * 2 1 4 4 N 1.46892 * 109.47749 * 120.00121 * 2 1 3 5 5 C 1.53001 * 109.47341 * 240.00635 * 2 1 3 6 6 C 1.50700 * 109.47339 * 174.99904 * 5 2 1 7 7 C 1.38251 * 119.55671 * 124.99850 * 6 5 2 8 8 C 1.38532 * 119.22086 * 179.97438 * 7 6 5 9 9 C 1.39149 * 118.37460 * 0.02562 * 8 7 6 10 10 O 1.35909 * 120.46958 * 179.97438 * 9 8 7 11 11 C 1.42894 * 117.00421 * 5.48740 * 10 9 8 12 12 H 1.08998 * 109.47422 * 35.14282 * 11 10 9 13 13 C 1.52996 * 109.47196 * 275.14153 * 11 10 9 14 14 C 1.53003 * 109.46931 * 155.14544 * 11 10 9 15 15 C 1.50701 * 109.46922 * 294.99702 * 14 11 10 16 16 H 1.07997 * 119.99960 * 0.02562 * 15 14 11 17 17 C 1.37881 * 120.00086 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99808 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47436 * 60.00278 * 19 17 15 21 21 H 1.48511 * 109.46923 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47271 * 299.99446 * 19 17 15 23 23 C 1.38706 * 119.04858 * 359.97438 * 9 8 7 24 24 N 1.31838 * 120.68612 * 359.74433 * 23 9 8 25 25 H 1.09000 * 109.46671 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46661 * 299.99427 * 1 2 3 27 27 H 1.08997 * 109.47004 * 59.99645 * 1 2 3 28 28 H 1.00901 * 110.99966 * 300.00203 * 4 2 1 29 29 H 1.00906 * 110.99937 * 63.95249 * 4 2 1 30 30 H 1.09001 * 109.46772 * 294.99597 * 5 2 1 31 31 H 1.09003 * 109.47413 * 54.98933 * 5 2 1 32 32 H 1.08000 * 120.39116 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.81764 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47430 * 59.99632 * 13 11 10 35 35 H 1.09003 * 109.47809 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.47067 * 299.99999 * 13 11 10 37 37 H 1.09000 * 109.47321 * 54.99669 * 14 11 10 38 38 H 1.09004 * 109.47156 * 175.00323 * 14 11 10 39 39 H 0.96998 * 119.99725 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.65268 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0401 -0.7211 -1.2493 6 6 3.5420 -0.6147 -1.3128 7 6 4.3034 -1.7643 -1.4132 8 6 5.6835 -1.6584 -1.4716 9 6 6.2518 -0.3891 -1.4259 10 8 7.6012 -0.2358 -1.4797 11 6 8.3794 -1.4130 -1.7046 12 1 7.8407 -2.0820 -2.3756 13 6 8.6301 -2.1209 -0.3716 14 6 9.7182 -1.0262 -2.3363 15 6 9.4777 -0.4401 -3.7037 16 1 8.4707 -0.3518 -4.0838 17 6 10.5432 -0.0165 -4.4694 18 7 11.7695 -0.1244 -4.0066 19 14 10.2449 0.7107 -6.1639 20 1 9.3893 1.9180 -6.0409 21 1 11.5444 1.0860 -6.7772 22 1 9.5644 -0.2933 -7.0206 23 6 5.4215 0.7174 -1.3247 24 7 4.1118 0.5737 -1.2773 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6963 -0.2350 2.0384 29 1 1.7504 -1.6648 1.1908 30 1 1.7518 -1.7714 -1.2057 31 1 1.6053 -0.2616 -2.1370 32 1 3.8280 -2.7335 -1.4458 33 1 6.3032 -2.5394 -1.5499 34 1 7.6764 -2.3964 0.0786 35 1 9.2242 -3.0187 -0.5430 36 1 9.1689 -1.4519 0.2994 37 1 10.2172 -0.2888 -1.7075 38 1 10.3469 -1.9121 -2.4263 39 1 12.5191 0.1739 -4.5451 40 1 5.8522 1.7071 -1.2889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695902571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:02 Heat of formation + Delta-G solvation = -46.302456 kcal Electronic energy + Delta-G solvation = -19659.811427 eV Core-core repulsion = 16666.130062 eV Total energy + Delta-G solvation = -2993.681364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58715 -39.59197 -37.34146 -35.49926 -33.58803 -33.08120 -32.03058 -29.70307 -29.40230 -27.55140 -25.29119 -24.79816 -23.44156 -21.94105 -21.07823 -19.14894 -18.53439 -17.71724 -17.35964 -16.77513 -16.50682 -16.16430 -15.45168 -15.31186 -14.89313 -14.87070 -14.39985 -14.20548 -13.95609 -13.70982 -13.58643 -13.39823 -13.27310 -12.99611 -12.87590 -12.64674 -12.55057 -12.27155 -12.22001 -11.86678 -11.73519 -11.34838 -11.13668 -10.60913 -10.57894 -10.39192 -9.47827 -9.06790 -8.22371 -6.31525 0.27922 0.42156 1.37406 1.40460 1.48222 2.38256 2.39241 2.89571 3.12144 3.49054 3.72667 3.79301 3.85518 4.01922 4.09944 4.18441 4.23361 4.35539 4.43006 4.48143 4.51650 4.71476 4.76793 4.83505 4.93187 4.97550 5.01928 5.12749 5.18324 5.24089 5.27108 5.36542 5.40771 5.45460 5.71520 5.74962 6.16951 6.38696 6.58008 6.72299 6.79932 7.12675 7.36055 8.89149 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.004060 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.293353 B = 6894.521358 C = 7487.646979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 H 0.065 0.935 4 N -0.853 5.853 5 C -0.054 4.054 6 C 0.093 3.907 7 C -0.121 4.121 8 C -0.172 4.172 9 C 0.066 3.934 10 O -0.315 6.315 11 C 0.094 3.906 12 H 0.066 0.934 13 C -0.167 4.167 14 C 0.029 3.971 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.266 1.266 23 C 0.049 3.951 24 N -0.457 5.457 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.345 0.655 29 H 0.345 0.655 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.055 0.945 37 H -0.001 1.001 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.649 -5.240 8.097 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.015 4.015 3 H 0.083 0.917 4 N -0.384 5.384 5 C -0.092 4.092 6 C -0.046 4.046 7 C -0.140 4.140 8 C -0.198 4.198 9 C 0.018 3.982 10 O -0.228 6.228 11 C 0.038 3.962 12 H 0.084 0.916 13 C -0.224 4.224 14 C -0.008 4.008 15 C -0.571 4.571 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.109 4.109 24 N -0.167 5.167 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.107 -4.115 7.865 22.897 hybrid contribution 0.180 -0.403 -0.695 0.824 sum -20.927 -4.518 7.169 22.578 Atomic orbital electron populations 1.22561 0.95936 1.02699 1.02622 1.21282 0.92674 0.97895 0.89678 0.91690 1.58804 1.68196 1.07100 1.04313 1.20606 0.87322 1.02709 0.98579 1.21344 0.97744 0.87818 0.97700 1.22069 0.92474 1.00894 0.98580 1.21968 0.97117 0.96605 1.04114 1.20501 0.84563 0.95843 0.97292 1.86206 1.14030 1.36902 1.85688 1.22614 0.92253 0.84724 0.96574 0.91561 1.22310 1.02679 1.01042 0.96379 1.19116 0.90859 0.96335 0.94520 1.21423 0.92772 1.41061 1.01876 0.93200 1.25843 0.94851 0.96229 1.02393 1.70052 0.99065 1.48573 1.39321 0.85600 0.77540 0.79042 0.79496 1.19940 1.20391 1.19047 1.22104 0.88251 0.97774 1.02764 1.67401 1.10131 1.27803 1.11339 0.91501 0.92332 0.91809 0.84180 0.84126 0.88240 0.89471 0.81790 0.83437 0.91123 0.89795 0.92560 0.98292 0.95458 0.92626 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.10 1.64 3.29 44.92 0.15 1.79 16 3 H 0.06 1.47 7.80 -2.38 -0.02 1.45 16 4 N -0.85 -13.94 8.97 -168.68 -1.51 -15.45 16 5 C -0.05 -0.97 5.23 29.85 0.16 -0.81 16 6 C 0.09 2.44 5.90 42.56 0.25 2.69 16 7 C -0.12 -3.03 9.70 22.34 0.22 -2.82 16 8 C -0.17 -5.30 8.34 22.56 0.19 -5.11 16 9 C 0.07 2.49 6.62 22.60 0.15 2.64 16 10 O -0.32 -13.88 9.56 -92.53 -0.88 -14.76 16 11 C 0.09 3.93 2.17 30.59 0.07 4.00 16 12 H 0.07 2.65 6.36 -2.39 -0.02 2.63 16 13 C -0.17 -5.54 9.18 71.98 0.66 -4.88 16 14 C 0.03 1.51 4.68 29.85 0.14 1.65 16 15 C -0.53 -30.91 8.88 25.60 0.23 -30.68 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.00 0.28 5.46 84.66 0.46 0.75 16 18 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 19 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C 0.05 1.75 11.14 84.80 0.94 2.70 16 24 N -0.46 -14.74 9.78 -183.50 -1.79 -16.53 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.35 4.81 9.04 -89.69 -0.81 3.99 16 29 H 0.35 4.31 8.98 -89.69 -0.81 3.50 16 30 H 0.10 1.24 7.87 -2.39 -0.02 1.22 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.16 2.81 7.95 -2.91 -0.02 2.78 16 33 H 0.15 4.16 5.59 -2.91 -0.02 4.14 16 34 H 0.07 2.02 6.92 -2.39 -0.02 2.00 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.15 5.39 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -68.94 332.28 1.84 -67.10 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.58 Total: 18.08 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 4.29 Total: -29.48 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -3.02 Total: -88.31 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.88 Total: -14.76 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.94 1.84 -67.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695902571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.798 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds