Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47135 * 2 1 4 4 N 1.46900 * 109.47183 * 119.99803 * 2 1 3 5 5 C 1.52997 * 109.47507 * 240.00027 * 2 1 3 6 6 C 1.50699 * 109.47360 * 174.99952 * 5 2 1 7 7 C 1.38252 * 119.55653 * 125.00040 * 6 5 2 8 8 C 1.38534 * 119.22230 * 179.97438 * 7 6 5 9 9 C 1.39136 * 118.37230 * 359.97438 * 8 7 6 10 10 O 1.35920 * 120.47369 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99583 * 354.64125 * 10 9 8 12 12 H 1.08998 * 109.47569 * 325.24793 * 11 10 9 13 13 C 1.53004 * 109.46854 * 85.25096 * 11 10 9 14 14 C 1.52996 * 109.47062 * 205.24633 * 11 10 9 15 15 C 1.50703 * 109.47069 * 64.99874 * 14 11 10 16 16 H 1.07998 * 120.00074 * 0.02562 * 15 14 11 17 17 C 1.37872 * 119.99946 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00144 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00222 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46824 * 89.99840 * 19 17 15 21 21 H 1.48501 * 109.47550 * 209.99671 * 19 17 15 22 22 H 1.48498 * 109.47287 * 330.00115 * 19 17 15 23 23 C 1.38705 * 119.05444 * 0.02562 * 9 8 7 24 24 N 1.31840 * 120.68425 * 359.73636 * 23 9 8 25 25 H 1.09000 * 109.46586 * 59.99908 * 1 2 3 26 26 H 1.08994 * 109.46708 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46944 * 299.99825 * 1 2 3 28 28 H 1.00896 * 111.00421 * 300.00513 * 4 2 1 29 29 H 1.00902 * 110.99940 * 63.95829 * 4 2 1 30 30 H 1.09000 * 109.46884 * 295.00080 * 5 2 1 31 31 H 1.09004 * 109.46793 * 54.99834 * 5 2 1 32 32 H 1.08004 * 120.38889 * 0.02562 * 7 6 5 33 33 H 1.08000 * 120.81169 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47059 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.46924 * 299.99463 * 13 11 10 36 36 H 1.08998 * 109.47280 * 59.99519 * 13 11 10 37 37 H 1.08993 * 109.47430 * 184.99999 * 14 11 10 38 38 H 1.09003 * 109.46965 * 305.00333 * 14 11 10 39 39 H 0.96998 * 120.00932 * 179.97438 * 18 17 15 40 40 H 1.08003 * 119.65525 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0401 -0.7212 -1.2492 6 6 3.5420 -0.6148 -1.3126 7 6 4.3035 -1.7644 -1.4130 8 6 5.6835 -1.6585 -1.4714 9 6 6.2517 -0.3893 -1.4268 10 8 7.6011 -0.2358 -1.4816 11 6 8.3906 -1.4269 -1.4664 12 1 7.9095 -2.1737 -0.8347 13 6 8.5205 -1.9709 -2.8906 14 6 9.7812 -1.1100 -0.9127 15 6 9.6639 -0.6909 0.5301 16 1 8.6945 -0.6547 1.0048 17 6 10.7942 -0.3548 1.2444 18 7 10.6919 0.0105 2.5037 19 14 12.4710 -0.4181 0.4237 20 1 12.7705 0.8994 -0.1926 21 1 13.5072 -0.7369 1.4385 22 1 12.4684 -1.4671 -0.6274 23 6 5.4215 0.7173 -1.3257 24 7 4.1119 0.5736 -1.2774 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6962 -0.2350 2.0385 29 1 1.7503 -1.6648 1.1909 30 1 1.7517 -1.7715 -1.2055 31 1 1.6055 -0.2617 -2.1369 32 1 3.8279 -2.7335 -1.4463 33 1 6.3031 -2.5396 -1.5504 34 1 9.1223 -2.8797 -2.8789 35 1 7.5299 -2.1967 -3.2850 36 1 9.0016 -1.2241 -3.5222 37 1 10.4112 -1.9966 -0.9834 38 1 10.2267 -0.3006 -1.4910 39 1 11.4871 0.2466 3.0065 40 1 5.8523 1.7070 -1.2899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695902579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -20.605699 kcal Electronic energy + Delta-G solvation = -19711.807772 eV Core-core repulsion = 16719.240702 eV Total energy + Delta-G solvation = -2992.567069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30222 -38.26446 -36.44258 -33.56611 -32.01397 -31.76542 -30.89484 -28.90931 -28.05347 -26.56115 -23.61686 -23.16949 -22.01160 -20.78987 -19.75945 -17.77083 -16.74910 -16.60332 -16.22043 -15.69754 -14.78963 -14.58581 -14.30452 -14.20292 -13.64627 -13.46440 -13.25521 -13.01896 -12.92986 -12.54900 -12.30788 -12.17831 -11.92380 -11.80180 -11.61466 -11.42209 -11.10776 -10.90131 -10.73766 -10.23282 -9.90251 -9.66733 -9.33785 -9.23987 -9.17008 -8.69179 -8.54319 -7.74512 -6.02982 -4.01544 1.52469 1.68172 3.30697 3.37731 3.38620 3.77194 4.12794 4.44102 4.44829 4.67558 4.72245 4.95342 5.08658 5.16593 5.22502 5.30440 5.35708 5.43548 5.49009 5.56566 5.59773 5.62476 5.75439 5.81773 5.83787 6.03007 6.07286 6.16924 6.33182 6.38627 6.50728 6.58001 6.78610 7.03832 7.14019 7.16596 7.41801 7.71356 7.96890 8.37627 8.51989 9.01973 9.57071 11.10487 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.004190 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.747890 B = 6680.942017 C = 7273.540666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.092 0.908 4 N -0.839 5.839 5 C -0.053 4.053 6 C 0.091 3.909 7 C -0.126 4.126 8 C -0.171 4.171 9 C 0.098 3.902 10 O -0.285 6.285 11 C 0.095 3.905 12 H 0.067 0.933 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.516 4.516 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.070 3.930 24 N -0.444 5.444 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.340 0.660 29 H 0.335 0.665 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 -4.093 -8.922 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.110 0.890 4 N -0.368 5.368 5 C -0.091 4.091 6 C -0.047 4.047 7 C -0.146 4.146 8 C -0.197 4.197 9 C 0.048 3.952 10 O -0.196 6.196 11 C 0.039 3.961 12 H 0.085 0.915 13 C -0.237 4.237 14 C -0.048 4.048 15 C -0.554 4.554 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.090 4.090 24 N -0.154 5.154 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.406 -2.945 -8.988 18.937 hybrid contribution 0.494 -1.203 -0.049 1.301 sum -15.912 -4.148 -9.036 18.763 Atomic orbital electron populations 1.22680 0.98101 1.01670 1.02256 1.21430 0.91059 0.99527 0.89928 0.88956 1.58802 1.67698 1.06246 1.04055 1.20435 0.90107 1.00679 0.97886 1.20613 0.95736 0.88392 0.99941 1.21629 0.93417 0.99184 1.00398 1.21734 0.95843 0.97276 1.04873 1.20280 0.85470 0.94484 0.94923 1.86271 1.12296 1.34825 1.86219 1.22602 0.93731 0.85104 0.94696 0.91464 1.22445 1.01595 1.01728 0.97955 1.19736 0.89770 0.97558 0.97692 1.21001 0.95529 1.45322 0.93568 0.90882 1.24994 0.98986 0.94642 0.94717 1.69912 1.29465 1.45965 1.08553 0.86810 0.84257 0.78958 0.79416 1.20174 1.21343 1.19117 1.22069 0.87566 0.97939 1.01389 1.67336 1.10954 1.26411 1.10695 0.92045 0.92911 0.92720 0.84763 0.85284 0.91050 0.90259 0.85660 0.84511 0.91288 0.93058 0.91815 0.94504 0.95716 0.92703 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.09 0.96 3.29 -67.71 -0.22 0.74 16 3 H 0.09 1.16 7.80 -51.93 -0.41 0.76 16 4 N -0.84 -9.08 8.97 -4.67 -0.04 -9.12 16 5 C -0.05 -0.56 5.23 -27.89 -0.15 -0.71 16 6 C 0.09 1.31 5.90 -82.58 -0.49 0.82 16 7 C -0.13 -1.79 9.70 -39.47 -0.38 -2.18 16 8 C -0.17 -2.77 8.36 -39.14 -0.33 -3.10 16 9 C 0.10 1.82 6.62 -39.08 -0.26 1.57 16 10 O -0.28 -6.00 9.56 -19.49 -0.19 -6.18 16 11 C 0.09 1.88 2.17 -26.73 -0.06 1.82 16 12 H 0.07 1.33 6.33 -51.93 -0.33 1.00 16 13 C -0.18 -2.81 9.20 37.16 0.34 -2.47 16 14 C -0.01 -0.25 3.75 -27.88 -0.10 -0.35 16 15 C -0.52 -14.82 9.43 -34.44 -0.32 -15.14 16 16 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 23 C 0.07 1.24 11.14 -17.38 -0.19 1.05 16 24 N -0.44 -7.38 9.78 -9.35 -0.09 -7.47 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 3.24 9.04 -39.29 -0.36 2.89 16 29 H 0.33 3.07 8.98 -39.29 -0.35 2.72 16 30 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 1.39 7.95 -52.48 -0.42 0.98 16 33 H 0.14 2.05 5.61 -52.49 -0.29 1.75 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.72 6.98 -51.93 -0.36 0.35 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.84 7.20 -51.93 -0.37 0.46 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.16 2.66 8.06 -52.48 -0.42 2.23 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -32.47 328.76 -7.41 -39.87 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.24 Total: 5.47 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.91 Total: -17.17 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.64 Total: -43.85 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.19 Total: -6.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.47 -7.41 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695902579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.266 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds