Wall clock time and date at job start Mon Mar 30 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 N 1.46497 * 109.47234 * 181.04832 * 3 2 1 5 5 C 1.36875 * 119.99897 * 261.40908 * 4 3 2 6 6 H 1.08002 * 119.99704 * 197.19369 * 5 4 3 7 7 C 1.39008 * 120.00370 * 17.19832 * 5 4 3 8 8 N 1.31400 * 119.99733 * 14.48644 * 7 5 4 9 9 Si 1.86803 * 120.00413 * 194.48612 * 7 5 4 10 10 H 1.48495 * 109.46892 * 59.99544 * 9 7 5 11 11 H 1.48491 * 109.47055 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46959 * 300.00217 * 9 7 5 13 13 C 1.34774 * 119.99845 * 81.41166 * 4 3 2 14 14 O 1.21745 * 120.00042 * 183.37676 * 13 4 3 15 15 C 1.46543 * 120.00234 * 3.36916 * 13 4 3 16 16 C 1.37997 * 126.23984 * 348.24616 * 15 13 4 17 17 C 1.39809 * 107.08675 * 180.02562 * 16 15 13 18 18 C 1.35487 * 107.87532 * 359.73335 * 17 16 15 19 19 N 1.35589 * 108.88410 * 0.43150 * 18 17 16 20 20 C 1.46501 * 125.68362 * 179.82626 * 19 18 17 21 21 C 1.52992 * 109.47108 * 263.30597 * 20 19 18 22 22 C 1.53007 * 109.46892 * 185.10621 * 21 20 19 23 23 H 1.09000 * 109.47454 * 305.01064 * 1 2 3 24 24 H 1.08997 * 109.47657 * 65.01225 * 1 2 3 25 25 H 1.09003 * 109.47459 * 185.01006 * 1 2 3 26 26 H 1.08998 * 109.47126 * 240.00358 * 2 1 3 27 27 H 1.09004 * 109.46957 * 120.00113 * 2 1 3 28 28 H 1.09006 * 109.47186 * 61.04837 * 3 2 1 29 29 H 1.09001 * 109.47356 * 301.05097 * 3 2 1 30 30 H 0.96998 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.08007 * 126.45947 * 0.02562 * 16 15 13 32 32 H 1.07994 * 126.05781 * 179.97438 * 17 16 15 33 33 H 1.07999 * 125.55988 * 180.29113 * 18 17 16 34 34 H 1.09001 * 109.46528 * 23.30784 * 20 19 18 35 35 H 1.08996 * 109.46829 * 143.30035 * 20 19 18 36 36 H 1.09003 * 109.47140 * 305.10273 * 21 20 19 37 37 H 1.08997 * 109.47850 * 65.10563 * 21 20 19 38 38 H 1.09001 * 109.47153 * 184.93640 * 22 21 20 39 39 H 1.08998 * 109.46863 * 304.93613 * 22 21 20 40 40 H 1.08995 * 109.47017 * 64.93290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4426 -0.0253 5 6 4.2092 1.6126 1.1359 6 1 5.2525 1.8893 1.0989 7 6 3.5819 1.4290 2.3627 8 7 2.4164 0.8250 2.4208 9 14 4.3958 2.0408 3.9289 10 1 4.5927 3.5101 3.8429 11 1 3.5294 1.7252 5.0928 12 1 5.7122 1.3740 4.0956 13 6 4.1585 1.2754 -1.1919 14 8 5.3744 1.2139 -1.2049 15 6 3.4060 1.1674 -2.4447 16 6 2.0425 0.9922 -2.5648 17 6 1.7537 0.9417 -3.9318 18 6 2.9181 1.0898 -4.6086 19 7 3.9305 1.2219 -3.7165 20 6 5.3459 1.3994 -4.0502 21 6 6.0562 0.0455 -3.9961 22 6 7.5564 0.2474 -4.2191 23 1 -0.3634 0.5896 0.8417 24 1 -0.3634 0.4341 -0.9314 25 1 -0.3634 -1.0237 0.0897 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6920 1.9509 0.8993 29 1 1.6613 1.9618 -0.8804 30 1 1.9788 0.6966 3.2769 31 1 1.3323 0.9095 -1.7554 32 1 0.7754 0.8121 -4.3705 33 1 3.0230 1.0986 -5.6835 34 1 5.4330 1.8156 -5.0539 35 1 5.8056 2.0799 -3.3335 36 1 5.8923 -0.4121 -3.0204 37 1 5.6576 -0.6055 -4.7742 38 1 8.0504 -0.7231 -4.2680 39 1 7.7157 0.7837 -5.1546 40 1 7.9719 0.8254 -3.3937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701222946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:29 Heat of formation + Delta-G solvation = 39.810156 kcal Electronic energy + Delta-G solvation = -21114.084692 eV Core-core repulsion = 18124.137450 eV Total energy + Delta-G solvation = -2989.947241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80284 -38.05777 -35.65531 -34.49495 -32.66748 -31.29054 -30.54424 -28.59280 -25.86674 -25.47593 -24.54664 -21.66137 -21.21052 -20.51035 -20.15661 -18.41759 -17.02647 -16.37090 -15.54503 -14.76593 -14.51161 -14.35082 -14.16750 -14.00604 -13.41656 -13.10096 -12.86781 -12.47778 -12.28308 -12.03855 -11.71875 -11.60760 -11.55783 -11.42747 -11.12929 -11.00708 -10.91334 -10.52998 -10.42642 -10.35170 -10.31847 -9.92493 -9.64791 -8.86927 -8.40853 -8.08294 -7.61394 -7.45405 -6.28936 -3.82715 2.37490 3.19554 3.23542 3.25816 3.40248 3.42618 4.13344 4.42218 4.93500 5.04387 5.14385 5.23178 5.41527 5.47747 5.58496 5.76270 5.84270 5.93174 5.99866 6.05751 6.08638 6.12989 6.19775 6.36896 6.40914 6.46277 6.57743 6.66140 6.81294 6.88134 6.93132 6.96991 7.39882 7.46739 7.50587 7.71404 7.85048 7.89222 8.13689 8.54798 9.17911 9.42490 10.02068 10.66249 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.007533 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.568981 B = 3716.138633 C = 4930.625293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.108 3.892 4 N -0.419 5.419 5 C -0.297 4.297 6 H 0.101 0.899 7 C 0.029 3.971 8 N -0.866 5.866 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.601 6.601 15 C -0.004 4.004 16 C -0.198 4.198 17 C -0.213 4.213 18 C -0.020 4.020 19 N -0.416 5.416 20 C 0.111 3.889 21 C -0.132 4.132 22 C -0.143 4.143 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.268 0.732 31 H 0.178 0.822 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -0.001 -9.503 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C -0.015 4.015 4 N -0.134 5.134 5 C -0.425 4.425 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.506 5.506 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.489 6.489 15 C -0.118 4.118 16 C -0.222 4.222 17 C -0.238 4.238 18 C -0.153 4.153 19 N -0.090 5.090 20 C -0.010 4.010 21 C -0.170 4.170 22 C -0.201 4.201 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.194 0.806 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.601 -0.015 -9.378 9.397 hybrid contribution 0.130 0.143 0.634 0.662 sum -0.471 0.128 -8.745 8.758 Atomic orbital electron populations 1.21646 0.97321 1.00397 1.00380 1.22089 0.93921 0.98347 1.03070 1.22056 0.80521 0.97142 1.01776 1.43404 1.05683 1.59100 1.05245 1.19680 0.96943 1.43818 0.82100 0.88107 1.25320 0.96600 0.96239 0.99295 1.70035 1.15938 1.38513 1.26064 0.85965 0.78963 0.79324 0.80261 1.19996 1.20894 1.19903 1.16775 0.86751 0.84979 0.82596 1.90600 1.13398 1.58018 1.86891 1.20661 0.93070 1.12547 0.85555 1.22795 0.94574 1.07314 0.97566 1.20772 0.97064 1.11880 0.94097 1.21728 0.87602 1.11212 0.94787 1.43986 1.06691 1.53215 1.05148 1.21890 0.78531 0.99323 1.01292 1.21789 0.95381 0.96474 1.03396 1.21635 0.95390 1.01696 1.01418 0.92745 0.94186 0.93920 0.93750 0.87887 0.88271 0.92628 0.92159 0.80580 0.85201 0.82852 0.90619 0.88306 0.89915 0.92626 0.92636 0.93234 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.72 37.16 0.36 -2.04 16 2 C -0.14 -2.88 4.67 -26.73 -0.12 -3.01 16 3 C 0.11 2.46 4.09 -4.04 -0.02 2.44 16 4 N -0.42 -10.88 2.64 -116.34 -0.31 -11.19 16 5 C -0.30 -8.16 9.36 -15.01 -0.14 -8.30 16 6 H 0.10 2.90 7.36 -52.49 -0.39 2.51 16 7 C 0.03 0.73 5.06 -17.45 -0.09 0.64 16 8 N -0.87 -21.69 8.28 55.50 0.46 -21.23 16 9 Si 0.93 20.28 29.58 -169.99 -5.03 15.25 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.50 12.81 7.48 -12.91 -0.10 12.72 16 14 O -0.60 -16.53 13.73 5.15 0.07 -16.46 16 15 C 0.00 -0.09 6.67 -81.98 -0.55 -0.64 16 16 C -0.20 -3.91 7.28 -39.08 -0.28 -4.20 16 17 C -0.21 -3.61 10.81 -39.98 -0.43 -4.04 16 18 C -0.02 -0.33 11.37 -16.87 -0.19 -0.52 16 19 N -0.42 -7.82 2.76 -112.86 -0.31 -8.13 16 20 C 0.11 1.83 5.34 -4.05 -0.02 1.80 16 21 C -0.13 -2.09 6.10 -26.73 -0.16 -2.25 16 22 C -0.14 -1.88 9.91 37.16 0.37 -1.51 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.61 7.18 -51.93 -0.37 0.24 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.96 6.14 -51.93 -0.32 0.64 16 27 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 28 H 0.10 2.40 5.98 -51.93 -0.31 2.09 16 29 H 0.06 1.19 4.84 -51.93 -0.25 0.93 16 30 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.18 3.40 2.01 -52.48 -0.11 3.30 16 32 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.10 1.85 7.01 -51.93 -0.36 1.49 16 36 H 0.08 1.64 7.27 -51.93 -0.38 1.26 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -29.22 311.50 -7.54 -36.77 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.74 Total: 9.20 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.38 Total: -8.91 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.16 Total: -40.55 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.07 Total: -16.46 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.22 -7.54 -36.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701222946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.577 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds