Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47420 * 2 1 4 4 N 1.46506 * 109.47151 * 185.03788 * 3 2 1 5 5 C 1.35582 * 125.68183 * 266.26784 * 4 3 2 6 6 C 1.35488 * 108.88354 * 179.83170 * 5 4 3 7 7 C 1.39803 * 107.87638 * 0.42618 * 6 5 4 8 8 C 1.37668 * 125.67890 * 86.57765 * 4 3 2 9 9 C 1.46542 * 126.24732 * 359.97438 * 8 4 3 10 10 O 1.21746 * 119.99772 * 354.48914 * 9 8 4 11 11 N 1.34769 * 120.00205 * 174.48378 * 9 8 4 12 12 C 1.36880 * 120.00018 * 185.17830 * 11 9 8 13 13 H 1.08004 * 120.00198 * 135.58274 * 12 11 9 14 14 C 1.39011 * 120.00017 * 315.58150 * 12 11 9 15 15 N 1.31403 * 119.99604 * 155.27246 * 14 12 11 16 16 Si 1.86799 * 120.00379 * 335.27950 * 14 12 11 17 17 H 1.48492 * 109.47339 * 95.36569 * 16 14 12 18 18 H 1.48497 * 109.47318 * 215.37169 * 16 14 12 19 19 H 1.48503 * 109.46586 * 335.36859 * 16 14 12 20 20 C 1.46498 * 120.00386 * 5.18388 * 11 9 8 21 21 C 1.53001 * 109.47468 * 169.62965 * 20 11 9 22 22 C 1.53005 * 109.46906 * 289.63424 * 20 11 9 23 23 H 1.08995 * 109.47006 * 304.79564 * 1 2 3 24 24 H 1.09001 * 109.46891 * 64.78886 * 1 2 3 25 25 H 1.08995 * 109.47261 * 184.78782 * 1 2 3 26 26 H 1.09006 * 109.47217 * 239.99752 * 2 1 3 27 27 H 1.09002 * 109.47213 * 120.00590 * 2 1 3 28 28 H 1.08993 * 109.46854 * 65.03761 * 3 2 1 29 29 H 1.09000 * 109.46802 * 305.04004 * 3 2 1 30 30 H 1.08001 * 125.55769 * 359.96813 * 5 4 3 31 31 H 1.07993 * 126.05920 * 180.16970 * 6 5 4 32 32 H 1.07997 * 126.45953 * 179.73658 * 7 6 5 33 33 H 0.96998 * 119.99768 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47087 * 49.63138 * 20 11 9 35 35 H 1.09001 * 109.46785 * 65.34075 * 21 20 11 36 36 H 1.09001 * 109.47042 * 185.33957 * 21 20 11 37 37 H 1.08999 * 109.47038 * 305.34033 * 21 20 11 38 38 H 1.08995 * 109.46896 * 46.74674 * 22 20 11 39 39 H 1.09003 * 109.47029 * 166.75116 * 22 20 11 40 40 H 1.08992 * 109.46656 * 286.74756 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 -0.1213 5 6 4.3793 1.4846 0.9100 6 6 5.6395 1.4683 0.4128 7 6 5.5501 1.4257 -0.9817 8 6 4.2078 1.4111 -1.3017 9 6 3.6394 1.3676 -2.6517 10 8 2.4364 1.2568 -2.8025 11 7 4.4484 1.4504 -3.7264 12 6 3.9115 1.5166 -4.9838 13 1 4.3005 2.2247 -5.7005 14 6 2.8654 0.6725 -5.3382 15 7 2.0386 1.0187 -6.2990 16 14 2.6350 -0.9538 -4.4486 17 1 1.6468 -0.7834 -3.3535 18 1 2.1417 -1.9762 -5.4059 19 1 3.9338 -1.3948 -3.8792 20 6 5.9025 1.4693 -3.5491 21 6 6.5844 1.3068 -4.9090 22 6 6.3227 2.8010 -2.9236 23 1 -0.3633 0.5864 0.8439 24 1 -0.3633 0.4377 -0.9298 25 1 -0.3633 -1.0240 0.0858 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7523 1.9295 0.9316 29 1 1.6049 1.9817 -0.8414 30 1 4.1177 1.5213 1.9572 31 1 6.5513 1.4892 0.9911 32 1 6.3759 1.4077 -1.6775 33 1 1.3084 0.4299 -6.5461 34 1 6.1993 0.6505 -2.8937 35 1 6.3638 2.1737 -5.5319 36 1 7.6622 1.2257 -4.7677 37 1 6.2130 0.4053 -5.3963 38 1 5.6700 3.0285 -2.0808 39 1 7.3534 2.7301 -2.5763 40 1 6.2439 3.5929 -3.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701223406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = 53.255154 kcal Electronic energy + Delta-G solvation = -21593.497797 eV Core-core repulsion = 18604.133575 eV Total energy + Delta-G solvation = -2989.364222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07857 -38.47841 -35.98164 -34.57442 -32.60827 -30.88614 -30.40691 -29.18782 -26.58750 -25.53143 -24.68891 -22.02892 -21.54425 -20.33828 -20.06056 -18.84868 -17.30844 -16.09534 -15.65983 -14.98611 -14.65458 -14.54384 -14.15195 -13.73824 -13.54228 -13.05431 -12.83110 -12.70308 -12.42927 -12.32219 -12.16187 -11.75123 -11.69471 -11.57074 -11.26888 -11.10151 -10.92542 -10.71887 -10.50647 -10.44885 -10.22414 -10.10856 -9.91944 -8.58095 -8.45929 -8.18399 -7.57888 -7.47038 -6.21725 -3.90306 2.21025 3.22469 3.25449 3.45333 3.50692 3.62630 4.35067 4.51912 4.60265 4.98243 5.11826 5.19848 5.29075 5.41904 5.50306 5.54341 5.58406 5.75675 5.80582 5.85280 5.86035 5.92017 6.03470 6.13592 6.17688 6.35704 6.39359 6.41575 6.47645 6.53605 6.64093 6.72459 6.90992 7.03337 7.29523 7.54593 7.74306 7.85508 8.09539 8.82672 8.97268 9.45517 9.90171 10.84137 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.011426 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.183788 B = 2449.940881 C = 3809.351101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.412 5.412 5 C -0.013 4.013 6 C -0.215 4.215 7 C -0.190 4.190 8 C -0.018 4.018 9 C 0.512 3.488 10 O -0.555 6.555 11 N -0.440 5.440 12 C -0.346 4.346 13 H 0.097 0.903 14 C 0.102 3.898 15 N -0.856 5.856 16 Si 0.897 3.103 17 H -0.257 1.257 18 H -0.305 1.305 19 H -0.279 1.279 20 C 0.113 3.887 21 C -0.136 4.136 22 C -0.176 4.176 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.171 0.829 33 H 0.271 0.729 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 -0.276 12.423 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.017 4.017 4 N -0.085 5.085 5 C -0.147 4.147 6 C -0.240 4.240 7 C -0.215 4.215 8 C -0.132 4.132 9 C 0.303 3.697 10 O -0.439 6.439 11 N -0.161 5.161 12 C -0.472 4.472 13 H 0.114 0.886 14 C -0.108 4.108 15 N -0.490 5.490 16 Si 0.726 3.274 17 H -0.182 1.182 18 H -0.234 1.234 19 H -0.204 1.204 20 C 0.009 3.991 21 C -0.194 4.194 22 C -0.234 4.234 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.174 0.826 31 H 0.150 0.850 32 H 0.188 0.812 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.025 -0.341 12.196 12.848 hybrid contribution -0.095 -0.832 0.512 0.982 sum 3.930 -1.174 12.708 13.354 Atomic orbital electron populations 1.21640 0.94781 1.01690 1.02172 1.21799 0.96596 0.96040 1.02669 1.22025 0.77021 0.98806 1.03825 1.44021 1.06245 1.53150 1.05120 1.21791 0.89509 1.10814 0.92586 1.20750 0.95989 1.12452 0.94795 1.22671 0.95583 1.07096 0.96123 1.20733 0.91088 1.13848 0.87553 1.17065 0.86647 0.83342 0.82662 1.90641 1.14225 1.53566 1.85455 1.43399 1.03172 1.64332 1.05223 1.18646 1.18457 1.21447 0.88605 0.88577 1.25263 0.93696 0.97936 0.93945 1.69812 1.12879 1.35996 1.30340 0.86607 0.79291 0.81580 0.79875 1.18206 1.23407 1.20400 1.21622 0.83493 0.96565 0.97402 1.21840 0.97477 1.03605 0.96442 1.22728 1.00777 0.97889 1.01960 0.92972 0.91775 0.92586 0.90614 0.92411 0.90342 0.87412 0.82645 0.84981 0.81225 0.91900 0.91088 0.91944 0.93463 0.91540 0.90375 0.92438 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -2.15 6.22 -26.73 -0.17 -2.32 16 3 C 0.10 1.73 5.40 -4.04 -0.02 1.71 16 4 N -0.41 -7.48 2.76 -112.85 -0.31 -7.79 16 5 C -0.01 -0.20 11.37 -16.88 -0.19 -0.39 16 6 C -0.22 -3.30 10.81 -39.98 -0.43 -3.73 16 7 C -0.19 -3.38 6.81 -39.08 -0.27 -3.65 16 8 C -0.02 -0.37 6.19 -81.98 -0.51 -0.88 16 9 C 0.51 12.74 5.96 -12.92 -0.08 12.66 16 10 O -0.55 -15.28 10.37 5.15 0.05 -15.23 16 11 N -0.44 -10.77 2.18 -109.24 -0.24 -11.00 16 12 C -0.35 -9.61 8.05 -15.01 -0.12 -9.74 16 13 H 0.10 2.77 7.18 -52.48 -0.38 2.39 16 14 C 0.10 2.97 4.68 -17.45 -0.08 2.89 16 15 N -0.86 -25.93 13.96 55.50 0.77 -25.15 16 16 Si 0.90 24.09 25.32 -169.99 -4.30 19.79 16 17 H -0.26 -7.11 6.43 56.52 0.36 -6.75 16 18 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 19 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 20 C 0.11 2.18 2.73 -67.93 -0.19 2.00 16 21 C -0.14 -2.43 8.17 37.16 0.30 -2.13 16 22 C -0.18 -2.93 7.56 37.16 0.28 -2.65 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.54 7.90 -51.93 -0.41 1.13 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.11 2.09 6.65 -51.93 -0.35 1.74 16 30 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.17 2.78 2.97 -52.49 -0.16 2.63 16 33 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.07 1.32 5.75 -51.93 -0.30 1.02 16 35 H 0.06 1.15 7.21 -51.93 -0.37 0.78 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.30 7.79 -51.93 -0.40 0.89 16 38 H 0.08 1.41 4.82 -51.93 -0.25 1.16 16 39 H 0.06 0.76 7.84 -51.93 -0.41 0.36 16 40 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -32.62 308.50 -6.47 -39.09 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.99 Total: 3.53 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.10 Total: -7.88 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.22 Total: -43.95 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.05 Total: -15.23 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.30 Total: 19.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.62 -6.47 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.342 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds