Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47420 * 2 1 4 4 N 1.46506 * 109.47151 * 185.03788 * 3 2 1 5 5 C 1.35582 * 125.68183 * 266.26784 * 4 3 2 6 6 C 1.35488 * 108.88354 * 179.83170 * 5 4 3 7 7 C 1.39803 * 107.87638 * 0.42618 * 6 5 4 8 8 C 1.37668 * 125.67890 * 86.57765 * 4 3 2 9 9 C 1.46542 * 126.24732 * 359.97438 * 8 4 3 10 10 O 1.21746 * 119.99772 * 354.48914 * 9 8 4 11 11 N 1.34769 * 120.00205 * 174.48378 * 9 8 4 12 12 C 1.36880 * 120.00018 * 185.17830 * 11 9 8 13 13 H 1.08004 * 120.00198 * 135.58274 * 12 11 9 14 14 C 1.39011 * 120.00017 * 315.58150 * 12 11 9 15 15 N 1.31403 * 119.99604 * 155.27246 * 14 12 11 16 16 Si 1.86799 * 120.00379 * 335.27950 * 14 12 11 17 17 H 1.48492 * 109.47339 * 95.36569 * 16 14 12 18 18 H 1.48497 * 109.47318 * 215.37169 * 16 14 12 19 19 H 1.48503 * 109.46586 * 335.36859 * 16 14 12 20 20 C 1.46498 * 120.00386 * 5.18388 * 11 9 8 21 21 C 1.53001 * 109.47468 * 169.62965 * 20 11 9 22 22 C 1.53005 * 109.46906 * 289.63424 * 20 11 9 23 23 H 1.08995 * 109.47006 * 304.79564 * 1 2 3 24 24 H 1.09001 * 109.46891 * 64.78886 * 1 2 3 25 25 H 1.08995 * 109.47261 * 184.78782 * 1 2 3 26 26 H 1.09006 * 109.47217 * 239.99752 * 2 1 3 27 27 H 1.09002 * 109.47213 * 120.00590 * 2 1 3 28 28 H 1.08993 * 109.46854 * 65.03761 * 3 2 1 29 29 H 1.09000 * 109.46802 * 305.04004 * 3 2 1 30 30 H 1.08001 * 125.55769 * 359.96813 * 5 4 3 31 31 H 1.07993 * 126.05920 * 180.16970 * 6 5 4 32 32 H 1.07997 * 126.45953 * 179.73658 * 7 6 5 33 33 H 0.96998 * 119.99768 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47087 * 49.63138 * 20 11 9 35 35 H 1.09001 * 109.46785 * 65.34075 * 21 20 11 36 36 H 1.09001 * 109.47042 * 185.33957 * 21 20 11 37 37 H 1.08999 * 109.47038 * 305.34033 * 21 20 11 38 38 H 1.08995 * 109.46896 * 46.74674 * 22 20 11 39 39 H 1.09003 * 109.47029 * 166.75116 * 22 20 11 40 40 H 1.08992 * 109.46656 * 286.74756 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 -0.1213 5 6 4.3793 1.4846 0.9100 6 6 5.6395 1.4683 0.4128 7 6 5.5501 1.4257 -0.9817 8 6 4.2078 1.4111 -1.3017 9 6 3.6394 1.3676 -2.6517 10 8 2.4364 1.2568 -2.8025 11 7 4.4484 1.4504 -3.7264 12 6 3.9115 1.5166 -4.9838 13 1 4.3005 2.2247 -5.7005 14 6 2.8654 0.6725 -5.3382 15 7 2.0386 1.0187 -6.2990 16 14 2.6350 -0.9538 -4.4486 17 1 1.6468 -0.7834 -3.3535 18 1 2.1417 -1.9762 -5.4059 19 1 3.9338 -1.3948 -3.8792 20 6 5.9025 1.4693 -3.5491 21 6 6.5844 1.3068 -4.9090 22 6 6.3227 2.8010 -2.9236 23 1 -0.3633 0.5864 0.8439 24 1 -0.3633 0.4377 -0.9298 25 1 -0.3633 -1.0240 0.0858 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7523 1.9295 0.9316 29 1 1.6049 1.9817 -0.8414 30 1 4.1177 1.5213 1.9572 31 1 6.5513 1.4892 0.9911 32 1 6.3759 1.4077 -1.6775 33 1 1.3084 0.4299 -6.5461 34 1 6.1993 0.6505 -2.8937 35 1 6.3638 2.1737 -5.5319 36 1 7.6622 1.2257 -4.7677 37 1 6.2130 0.4053 -5.3963 38 1 5.6700 3.0285 -2.0808 39 1 7.3534 2.7301 -2.5763 40 1 6.2439 3.5929 -3.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701223406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = 32.613292 kcal Electronic energy + Delta-G solvation = -21594.392895 eV Core-core repulsion = 18604.133575 eV Total energy + Delta-G solvation = -2990.259321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.48833 -40.20071 -37.69064 -35.91478 -34.68012 -32.46876 -31.94654 -30.66359 -27.96155 -26.85265 -26.57549 -23.62381 -22.84766 -21.91539 -21.55293 -20.39087 -19.02781 -17.77904 -17.36785 -16.74510 -16.12223 -15.98240 -15.66348 -15.51792 -15.16860 -14.72937 -14.46864 -14.32109 -13.92242 -13.75909 -13.64812 -13.11659 -13.07956 -13.02466 -12.79847 -12.63801 -12.34483 -12.27875 -12.20704 -12.05319 -11.85959 -11.77486 -11.62795 -10.78502 -10.38299 -9.56420 -9.39217 -8.93190 -8.45576 -6.11153 0.70649 1.23822 1.31478 1.41708 1.93816 2.01158 2.34570 2.64933 2.77632 3.13121 3.75502 3.87626 3.95697 4.09430 4.17201 4.27815 4.31547 4.34788 4.40278 4.53700 4.65983 4.68779 4.74152 4.88308 4.95513 5.01629 5.04210 5.11500 5.15686 5.22504 5.36190 5.41365 5.50266 5.56446 5.72054 5.90180 6.06677 6.16676 6.53395 6.81712 6.96029 7.37011 7.94952 8.64348 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.011426 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.183788 B = 2449.940881 C = 3809.351101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.104 3.896 4 N -0.421 5.421 5 C 0.012 3.988 6 C -0.219 4.219 7 C -0.169 4.169 8 C -0.079 4.079 9 C 0.508 3.492 10 O -0.595 6.595 11 N -0.460 5.460 12 C -0.335 4.335 13 H 0.075 0.925 14 C 0.059 3.941 15 N -0.901 5.901 16 Si 0.946 3.054 17 H -0.279 1.279 18 H -0.300 1.300 19 H -0.273 1.273 20 C 0.106 3.894 21 C -0.132 4.132 22 C -0.165 4.165 23 H 0.086 0.914 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.271 0.729 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -0.359 16.555 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.017 4.017 4 N -0.094 5.094 5 C -0.122 4.122 6 C -0.243 4.243 7 C -0.194 4.194 8 C -0.191 4.191 9 C 0.301 3.699 10 O -0.482 6.482 11 N -0.182 5.182 12 C -0.462 4.462 13 H 0.092 0.908 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.775 3.225 17 H -0.206 1.206 18 H -0.228 1.228 19 H -0.198 1.198 20 C 0.003 3.997 21 C -0.189 4.189 22 C -0.222 4.222 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.220 0.780 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.549 -0.429 16.317 17.588 hybrid contribution -0.774 -0.710 -0.574 1.197 sum 5.775 -1.139 15.743 16.808 Atomic orbital electron populations 1.21622 0.93431 1.02797 1.01992 1.21741 0.97819 0.95673 1.01263 1.22068 0.76613 0.98758 1.04296 1.44228 1.06938 1.53191 1.05064 1.22668 0.88954 1.06814 0.93803 1.21200 0.97642 1.11844 0.93580 1.22924 0.94336 1.04227 0.97949 1.20280 0.92696 1.19657 0.86512 1.17779 0.86298 0.81231 0.84595 1.90604 1.16187 1.54928 1.86504 1.43622 1.05518 1.65119 1.03949 1.18523 1.17956 1.20031 0.89693 0.90778 1.25789 0.94142 1.00114 0.94606 1.69882 1.14212 1.37150 1.32542 0.85828 0.78632 0.79714 0.78314 1.20594 1.22799 1.19832 1.21952 0.80345 0.98662 0.98705 1.21817 1.00174 1.01660 0.95254 1.22624 1.02960 0.95703 1.00930 0.89516 0.94881 0.91496 0.95889 0.89608 0.85748 0.91481 0.78029 0.81175 0.80106 0.91962 0.89690 0.93465 0.88781 0.93989 0.91660 0.87889 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.01 6.22 30.59 0.19 -3.82 16 3 C 0.10 3.29 5.40 86.38 0.47 3.76 16 4 N -0.42 -14.26 2.76 -510.95 -1.41 -15.67 16 5 C 0.01 0.30 11.37 83.48 0.95 1.25 16 6 C -0.22 -5.50 10.81 22.01 0.24 -5.27 16 7 C -0.17 -5.43 6.81 22.59 0.15 -5.27 16 8 C -0.08 -3.20 6.19 40.34 0.25 -2.95 16 9 C 0.51 25.97 5.96 86.41 0.51 26.48 16 10 O -0.60 -34.63 10.37 -4.50 -0.05 -34.68 16 11 N -0.46 -23.05 2.18 -617.73 -1.35 -24.40 16 12 C -0.34 -19.52 8.05 84.09 0.68 -18.85 16 13 H 0.07 4.54 7.18 -2.91 -0.02 4.51 16 14 C 0.06 3.61 4.68 84.94 0.40 4.01 16 15 N -0.90 -57.64 13.96 21.68 0.30 -57.34 16 16 Si 0.95 52.48 25.32 68.60 1.74 54.22 16 17 H -0.28 -16.38 6.43 99.48 0.64 -15.74 16 18 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 19 H -0.27 -14.61 7.11 99.48 0.71 -13.91 16 20 C 0.11 3.96 2.73 44.99 0.12 4.08 16 21 C -0.13 -4.58 8.17 71.98 0.59 -3.99 16 22 C -0.16 -5.08 7.56 71.98 0.54 -4.53 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.02 0.95 7.90 -2.38 -0.02 0.93 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.12 2.73 8.13 -2.39 -0.02 2.71 16 29 H 0.07 2.69 6.65 -2.39 -0.02 2.68 16 30 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.18 5.21 2.97 -2.91 -0.01 5.20 16 33 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 34 H 0.09 2.95 5.75 -2.39 -0.01 2.94 16 35 H 0.05 1.75 7.21 -2.39 -0.02 1.74 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.64 7.79 -2.39 -0.02 1.62 16 38 H 0.06 2.21 4.82 -2.39 -0.01 2.20 16 39 H 0.10 2.24 7.84 -2.39 -0.02 2.22 16 40 H 0.04 1.43 8.03 -2.39 -0.02 1.41 16 Total: -1.00 -78.22 308.50 5.99 -72.22 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.96 Total: 13.86 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.81 Total: -8.22 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -2.46 Total: -97.41 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.05 Total: -34.68 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 1.74 Total: 54.22 kcal Total: -78.22 5.99 -72.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.835 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds