Wall clock time and date at job start Mon Mar 30 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 N 1.46507 * 109.47035 * 185.05997 * 3 2 1 5 5 C 1.35525 * 125.67793 * 261.68995 * 4 3 2 6 6 C 1.35454 * 108.87293 * 180.13408 * 5 4 3 7 7 C 1.39834 * 107.86387 * 359.60673 * 6 5 4 8 8 C 1.37649 * 125.67488 * 81.38081 * 4 3 2 9 9 C 1.46681 * 126.23665 * 0.02636 * 8 4 3 10 10 O 1.21695 * 119.99715 * 347.74975 * 9 8 4 11 11 N 1.34773 * 119.99775 * 167.75326 * 9 8 4 12 12 C 1.46500 * 120.00569 * 0.28161 * 11 9 8 13 13 C 1.46502 * 119.99781 * 180.28215 * 11 9 8 14 14 H 1.09006 * 109.47120 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.47386 * 239.99840 * 13 11 9 16 16 C 1.50700 * 109.47357 * 119.99608 * 13 11 9 17 17 H 1.08007 * 119.99829 * 0.02562 * 16 13 11 18 18 C 1.37884 * 120.00233 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99597 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99693 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47180 * 60.00657 * 20 18 16 22 22 H 1.48504 * 109.46783 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47074 * 299.99866 * 20 18 16 24 24 H 1.09002 * 109.47160 * 184.97122 * 1 2 3 25 25 H 1.08992 * 109.47392 * 304.98021 * 1 2 3 26 26 H 1.09008 * 109.47160 * 64.97576 * 1 2 3 27 27 H 1.08999 * 109.46718 * 240.00342 * 2 1 3 28 28 H 1.08989 * 109.47010 * 120.00252 * 2 1 3 29 29 H 1.08993 * 109.47423 * 65.06363 * 3 2 1 30 30 H 1.09005 * 109.47686 * 305.05430 * 3 2 1 31 31 H 1.08004 * 125.56526 * 0.02647 * 5 4 3 32 32 H 1.08001 * 126.06668 * 179.87035 * 6 5 4 33 33 H 1.07998 * 126.45971 * 180.24085 * 7 6 5 34 34 H 1.08999 * 109.47131 * 83.38609 * 12 11 9 35 35 H 1.09001 * 109.47316 * 203.38819 * 12 11 9 36 36 H 1.09001 * 109.46512 * 323.38686 * 12 11 9 37 37 H 1.08997 * 109.47471 * 300.00157 * 15 13 11 38 38 H 1.09001 * 109.46896 * 59.99711 * 15 13 11 39 39 H 1.09000 * 109.47410 * 179.97438 * 15 13 11 40 40 H 0.97004 * 119.99208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4999 1.4443 -0.1218 5 6 4.3784 1.5723 0.9022 6 6 5.6383 1.5317 0.4064 7 6 5.5488 1.3633 -0.9789 8 6 4.2078 1.3103 -1.2947 9 6 3.6390 1.1419 -2.6363 10 8 2.4562 0.8877 -2.7682 11 7 4.4264 1.2686 -3.7227 12 6 5.8516 1.5684 -3.5637 13 6 3.8571 1.1066 -5.0628 14 1 2.7919 0.8896 -4.9813 15 6 4.5599 -0.0482 -5.7794 16 6 4.0515 2.3779 -5.8484 17 1 4.5497 3.2221 -5.3949 18 6 3.5942 2.4630 -7.1464 19 7 2.9880 1.4349 -7.6987 20 14 3.8359 4.0387 -8.1202 21 1 5.2869 4.3346 -8.2309 22 1 3.2587 3.8745 -9.4786 23 1 3.1536 5.1597 -7.4252 24 1 -0.3633 -1.0238 0.0891 25 1 -0.3634 0.5891 0.8419 26 1 -0.3634 0.4347 -0.9313 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7526 1.9295 0.9318 30 1 1.6046 1.9819 -0.8413 31 1 4.1166 1.6895 1.9435 32 1 6.5501 1.6107 0.9798 33 1 6.3746 1.2888 -1.6710 34 1 6.3981 0.6448 -3.3736 35 1 6.2290 2.0330 -4.4747 36 1 5.9878 2.2506 -2.7246 37 1 5.6249 0.1692 -5.8609 38 1 4.4193 -0.9677 -5.2112 39 1 4.1360 -0.1690 -6.7763 40 1 2.6660 1.4950 -8.6118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701223435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:37 Heat of formation + Delta-G solvation = 23.572900 kcal Electronic energy + Delta-G solvation = -20657.745384 eV Core-core repulsion = 17667.094043 eV Total energy + Delta-G solvation = -2990.651341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16952 -38.42373 -35.60270 -34.75501 -32.93053 -31.03540 -30.04495 -28.09012 -26.57929 -25.66961 -25.20062 -22.56255 -21.76319 -20.53640 -19.75300 -18.52168 -16.74695 -16.35555 -15.68399 -15.13924 -14.93238 -14.80076 -14.21111 -14.01308 -13.76458 -13.14125 -12.75590 -12.69766 -12.38215 -12.35068 -12.20464 -11.86787 -11.71149 -11.58000 -11.18932 -11.06607 -10.84876 -10.71946 -10.67896 -10.48534 -10.23894 -10.15350 -9.19899 -8.99304 -8.47207 -8.41479 -7.93543 -7.52947 -6.06443 -4.14277 1.95210 2.98146 3.03197 3.28997 3.33828 3.36103 3.97731 4.12115 4.41568 4.80482 4.96707 5.10202 5.23487 5.26259 5.28713 5.38568 5.59870 5.67783 5.70253 5.78587 5.88517 6.01475 6.07654 6.23725 6.31160 6.35447 6.39576 6.48752 6.78030 6.85587 7.02682 7.10053 7.28904 7.44622 7.50302 7.57818 7.72895 8.03425 8.20753 8.54227 8.84115 9.07490 9.52019 10.98847 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.005709 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.084671 B = 4902.991079 C = 5490.169063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.106 3.894 4 N -0.411 5.411 5 C -0.002 4.002 6 C -0.213 4.213 7 C -0.171 4.171 8 C -0.029 4.029 9 C 0.570 3.430 10 O -0.560 6.560 11 N -0.575 5.575 12 C 0.066 3.934 13 C 0.260 3.740 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.094 0.906 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -0.906 15.166 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.084 5.084 5 C -0.137 4.137 6 C -0.237 4.237 7 C -0.197 4.197 8 C -0.143 4.143 9 C 0.357 3.643 10 O -0.441 6.441 11 N -0.305 5.305 12 C -0.078 4.078 13 C 0.160 3.840 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.179 0.821 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.030 0.970 39 H 0.112 0.888 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.093 14.870 14.985 hybrid contribution 0.288 0.876 -0.463 1.032 sum 1.787 -0.216 14.407 14.519 Atomic orbital electron populations 1.21644 0.94698 1.01844 1.02117 1.21804 0.96613 0.95625 1.03071 1.22011 0.76654 0.99173 1.03627 1.44045 1.06438 1.52247 1.05626 1.21870 0.89432 1.09425 0.92937 1.20806 0.96232 1.11776 0.94901 1.22213 0.94912 1.06323 0.96202 1.20517 0.91351 1.14864 0.87590 1.17038 0.85961 0.78399 0.82852 1.90732 1.15538 1.51134 1.86692 1.47928 1.08576 1.66721 1.07281 1.22292 0.82439 0.99677 1.03371 1.18971 0.95333 0.94523 0.75124 0.91813 1.22088 0.99238 0.95910 1.03220 1.21296 1.38829 0.98665 0.97678 0.92231 1.24888 0.94813 0.96619 0.97425 1.69877 1.38464 1.29719 1.14554 0.86544 0.78429 0.83388 0.78957 1.20172 1.21174 1.20291 0.92415 0.93074 0.91792 0.89909 0.92396 0.89959 0.88255 0.82220 0.84599 0.82075 0.93537 0.90161 0.90677 0.95070 0.96978 0.88794 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.13 -1.81 6.06 -26.73 -0.16 -1.97 16 3 C 0.11 1.49 5.33 -4.04 -0.02 1.47 16 4 N -0.41 -6.43 2.76 -112.87 -0.31 -6.74 16 5 C 0.00 -0.03 11.36 -16.91 -0.19 -0.22 16 6 C -0.21 -2.84 10.81 -39.98 -0.43 -3.27 16 7 C -0.17 -2.67 8.70 -39.12 -0.34 -3.01 16 8 C -0.03 -0.53 6.70 -81.98 -0.55 -1.08 16 9 C 0.57 12.55 7.62 -12.85 -0.10 12.46 16 10 O -0.56 -13.70 13.18 5.19 0.07 -13.63 16 11 N -0.58 -12.79 2.75 -176.80 -0.49 -13.28 16 12 C 0.07 1.16 7.64 59.85 0.46 1.62 16 13 C 0.26 6.74 2.63 -69.08 -0.18 6.56 16 14 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 15 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 16 C -0.53 -14.32 7.95 -34.44 -0.27 -14.59 16 17 H 0.06 1.60 7.45 -52.48 -0.39 1.21 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 27 H 0.08 1.42 6.98 -51.93 -0.36 1.06 16 28 H 0.06 0.70 8.14 -51.94 -0.42 0.28 16 29 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.10 1.63 7.16 -51.93 -0.37 1.25 16 31 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.16 2.25 4.51 -52.49 -0.24 2.02 16 34 H 0.05 0.73 7.51 -51.93 -0.39 0.34 16 35 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16 36 H 0.08 1.19 5.02 -51.93 -0.26 0.93 16 37 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -31.00 319.51 -7.47 -38.46 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.97 Total: 3.70 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.19 Total: -4.89 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.17 Total: -44.56 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.00 -7.47 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.037 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds