Wall clock time and date at job start Mon Mar 30 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 N 1.46507 * 109.47035 * 185.05997 * 3 2 1 5 5 C 1.35525 * 125.67793 * 261.68995 * 4 3 2 6 6 C 1.35454 * 108.87293 * 180.13408 * 5 4 3 7 7 C 1.39834 * 107.86387 * 359.60673 * 6 5 4 8 8 C 1.37649 * 125.67488 * 81.38081 * 4 3 2 9 9 C 1.46681 * 126.23665 * 0.02636 * 8 4 3 10 10 O 1.21695 * 119.99715 * 347.74975 * 9 8 4 11 11 N 1.34773 * 119.99775 * 167.75326 * 9 8 4 12 12 C 1.46500 * 120.00569 * 0.28161 * 11 9 8 13 13 C 1.46502 * 119.99781 * 180.28215 * 11 9 8 14 14 H 1.09006 * 109.47120 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.47386 * 239.99840 * 13 11 9 16 16 C 1.50700 * 109.47357 * 119.99608 * 13 11 9 17 17 H 1.08007 * 119.99829 * 0.02562 * 16 13 11 18 18 C 1.37884 * 120.00233 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99597 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99693 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47180 * 60.00657 * 20 18 16 22 22 H 1.48504 * 109.46783 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47074 * 299.99866 * 20 18 16 24 24 H 1.09002 * 109.47160 * 184.97122 * 1 2 3 25 25 H 1.08992 * 109.47392 * 304.98021 * 1 2 3 26 26 H 1.09008 * 109.47160 * 64.97576 * 1 2 3 27 27 H 1.08999 * 109.46718 * 240.00342 * 2 1 3 28 28 H 1.08989 * 109.47010 * 120.00252 * 2 1 3 29 29 H 1.08993 * 109.47423 * 65.06363 * 3 2 1 30 30 H 1.09005 * 109.47686 * 305.05430 * 3 2 1 31 31 H 1.08004 * 125.56526 * 0.02647 * 5 4 3 32 32 H 1.08001 * 126.06668 * 179.87035 * 6 5 4 33 33 H 1.07998 * 126.45971 * 180.24085 * 7 6 5 34 34 H 1.08999 * 109.47131 * 83.38609 * 12 11 9 35 35 H 1.09001 * 109.47316 * 203.38819 * 12 11 9 36 36 H 1.09001 * 109.46512 * 323.38686 * 12 11 9 37 37 H 1.08997 * 109.47471 * 300.00157 * 15 13 11 38 38 H 1.09001 * 109.46896 * 59.99711 * 15 13 11 39 39 H 1.09000 * 109.47410 * 179.97438 * 15 13 11 40 40 H 0.97004 * 119.99208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4999 1.4443 -0.1218 5 6 4.3784 1.5723 0.9022 6 6 5.6383 1.5317 0.4064 7 6 5.5488 1.3633 -0.9789 8 6 4.2078 1.3103 -1.2947 9 6 3.6390 1.1419 -2.6363 10 8 2.4562 0.8877 -2.7682 11 7 4.4264 1.2686 -3.7227 12 6 5.8516 1.5684 -3.5637 13 6 3.8571 1.1066 -5.0628 14 1 2.7919 0.8896 -4.9813 15 6 4.5599 -0.0482 -5.7794 16 6 4.0515 2.3779 -5.8484 17 1 4.5497 3.2221 -5.3949 18 6 3.5942 2.4630 -7.1464 19 7 2.9880 1.4349 -7.6987 20 14 3.8359 4.0387 -8.1202 21 1 5.2869 4.3346 -8.2309 22 1 3.2587 3.8745 -9.4786 23 1 3.1536 5.1597 -7.4252 24 1 -0.3633 -1.0238 0.0891 25 1 -0.3634 0.5891 0.8419 26 1 -0.3634 0.4347 -0.9313 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7526 1.9295 0.9318 30 1 1.6046 1.9819 -0.8413 31 1 4.1166 1.6895 1.9435 32 1 6.5501 1.6107 0.9798 33 1 6.3746 1.2888 -1.6710 34 1 6.3981 0.6448 -3.3736 35 1 6.2290 2.0330 -4.4747 36 1 5.9878 2.2506 -2.7246 37 1 5.6249 0.1692 -5.8609 38 1 4.4193 -0.9677 -5.2112 39 1 4.1360 -0.1690 -6.7763 40 1 2.6660 1.4950 -8.6118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701223435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:37 Heat of formation + Delta-G solvation = 5.488179 kcal Electronic energy + Delta-G solvation = -20658.529597 eV Core-core repulsion = 17667.094043 eV Total energy + Delta-G solvation = -2991.435554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.37869 -40.06449 -37.25404 -36.04353 -34.82573 -32.33616 -31.64756 -29.53289 -28.03616 -27.31480 -26.81270 -24.17825 -22.86635 -21.81647 -21.29423 -19.90632 -18.46927 -18.02649 -17.40081 -16.72810 -16.37426 -16.08003 -15.79638 -15.39138 -14.94667 -14.71230 -14.37355 -13.91437 -13.81606 -13.69342 -13.57294 -13.45838 -12.99049 -12.97210 -12.77645 -12.73262 -12.68368 -12.23407 -12.20417 -12.12669 -11.89435 -11.70547 -11.22687 -10.73488 -10.50204 -9.62494 -9.38223 -9.02470 -8.15784 -6.32625 0.64284 1.40841 1.43297 1.50893 1.79752 1.95041 2.35726 2.51032 2.60965 3.11889 3.75010 3.78537 3.93501 4.18095 4.28803 4.36450 4.45382 4.50976 4.60018 4.66681 4.69395 4.74266 4.77863 4.88123 5.00017 5.01808 5.05170 5.18539 5.25834 5.29523 5.35653 5.45903 5.57560 5.65431 5.92851 6.05916 6.10057 6.14482 6.46436 6.74280 6.80828 7.29824 7.46363 8.88572 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.005709 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.084671 B = 4902.991079 C = 5490.169063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.105 3.895 4 N -0.418 5.418 5 C 0.020 3.980 6 C -0.218 4.218 7 C -0.159 4.159 8 C -0.080 4.080 9 C 0.558 3.442 10 O -0.603 6.603 11 N -0.587 5.587 12 C 0.066 3.934 13 C 0.266 3.734 14 H 0.009 0.991 15 C -0.131 4.131 16 C -0.540 4.540 17 H 0.059 0.941 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.279 1.279 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.206 0.794 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.017 0.983 39 H 0.070 0.930 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 0.186 17.940 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.015 4.015 4 N -0.092 5.092 5 C -0.115 4.115 6 C -0.241 4.241 7 C -0.185 4.185 8 C -0.193 4.193 9 C 0.349 3.651 10 O -0.487 6.487 11 N -0.316 5.316 12 C -0.075 4.075 13 C 0.164 3.836 14 H 0.027 0.973 15 C -0.189 4.189 16 C -0.578 4.578 17 H 0.078 0.922 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.207 1.207 23 H -0.204 1.204 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.223 0.777 32 H 0.188 0.812 33 H 0.191 0.809 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.407 -0.001 17.653 17.979 hybrid contribution -0.300 0.508 -1.197 1.334 sum 3.108 0.507 16.456 16.755 Atomic orbital electron populations 1.21618 0.93455 1.02789 1.01979 1.21723 0.97705 0.95300 1.01717 1.22081 0.76163 0.99153 1.04146 1.44248 1.07145 1.52274 1.05488 1.22715 0.88856 1.05795 0.94096 1.21229 0.97811 1.11266 0.93809 1.22488 0.93851 1.04242 0.97933 1.20086 0.92741 1.19831 0.86631 1.17687 0.85518 0.77449 0.84481 1.90693 1.17474 1.53003 1.87561 1.47887 1.10405 1.67252 1.06074 1.22508 0.79911 1.01326 1.03802 1.18554 0.92850 0.94799 0.77381 0.97268 1.21872 0.99759 0.95644 1.01659 1.21529 1.39032 0.99116 0.98171 0.92237 1.25746 0.94350 0.99854 0.98437 1.70022 1.39064 1.31663 1.14845 0.85486 0.79049 0.79042 0.77304 1.18538 1.20717 1.20413 0.91515 0.90047 0.94445 0.94619 0.90114 0.85587 0.91928 0.77726 0.81206 0.80904 0.91102 0.91046 0.88510 0.93331 0.96398 0.91170 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.13 -3.42 6.06 30.59 0.19 -3.23 16 3 C 0.11 2.87 5.33 86.38 0.46 3.33 16 4 N -0.42 -12.41 2.76 -511.01 -1.41 -13.82 16 5 C 0.02 0.44 11.36 83.48 0.95 1.39 16 6 C -0.22 -4.85 10.81 22.01 0.24 -4.61 16 7 C -0.16 -4.57 8.70 22.57 0.20 -4.38 16 8 C -0.08 -2.91 6.70 40.35 0.27 -2.64 16 9 C 0.56 25.84 7.62 86.45 0.66 26.50 16 10 O -0.60 -32.07 13.18 -4.33 -0.06 -32.12 16 11 N -0.59 -27.04 2.75 -831.50 -2.29 -29.33 16 12 C 0.07 2.31 7.64 127.77 0.98 3.29 16 13 C 0.27 14.49 2.63 44.24 0.12 14.61 16 14 H 0.01 0.60 6.90 -2.38 -0.02 0.59 16 15 C -0.13 -6.58 8.97 71.98 0.65 -5.93 16 16 C -0.54 -30.30 7.95 25.60 0.20 -30.10 16 17 H 0.06 3.26 7.45 -2.91 -0.02 3.23 16 18 C 0.02 0.88 5.30 84.66 0.45 1.33 16 19 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 20 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.03 1.30 6.98 -2.39 -0.02 1.28 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.13 2.26 8.11 -2.39 -0.02 2.24 16 30 H 0.06 2.16 7.16 -2.38 -0.02 2.15 16 31 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.17 4.36 4.51 -2.91 -0.01 4.35 16 34 H 0.07 2.10 7.51 -2.39 -0.02 2.08 16 35 H 0.07 2.60 7.13 -2.39 -0.02 2.58 16 36 H 0.10 2.93 5.02 -2.39 -0.01 2.92 16 37 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -72.90 319.51 5.60 -67.30 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.02 Total: 18.73 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.06 Total: -2.98 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.46 Total: -96.71 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.06 Total: -32.12 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.90 5.60 -67.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.791 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds