Wall clock time and date at job start Mon Mar 30 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 N 1.46505 * 109.47019 * 185.06937 * 3 2 1 5 5 C 1.35542 * 125.67451 * 261.65026 * 4 3 2 6 6 C 1.35454 * 108.86747 * 180.02562 * 5 4 3 7 7 C 1.39832 * 107.86754 * 359.97438 * 6 5 4 8 8 C 1.37646 * 125.68061 * 81.68402 * 4 3 2 9 9 C 1.46680 * 126.22946 * 359.97438 * 8 4 3 10 10 O 1.21690 * 120.00471 * 347.70044 * 9 8 4 11 11 N 1.34777 * 119.99604 * 167.69890 * 9 8 4 12 12 C 1.46499 * 120.00233 * 0.25299 * 11 9 8 13 13 C 1.46504 * 119.99998 * 180.25250 * 11 9 8 14 14 H 1.09003 * 109.47049 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47176 * 120.00261 * 13 11 9 16 16 C 1.50697 * 109.47228 * 240.00476 * 13 11 9 17 17 H 1.08001 * 120.00120 * 359.97438 * 16 13 11 18 18 C 1.37873 * 120.00413 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99457 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00587 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46888 * 59.99618 * 20 18 16 22 22 H 1.48497 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47089 * 299.99955 * 20 18 16 24 24 H 1.09000 * 109.47218 * 184.96934 * 1 2 3 25 25 H 1.08995 * 109.47266 * 304.97932 * 1 2 3 26 26 H 1.09006 * 109.46847 * 64.97297 * 1 2 3 27 27 H 1.09002 * 109.47557 * 239.99315 * 2 1 3 28 28 H 1.09003 * 109.46980 * 120.00002 * 2 1 3 29 29 H 1.09001 * 109.47308 * 65.07204 * 3 2 1 30 30 H 1.08996 * 109.47323 * 305.06732 * 3 2 1 31 31 H 1.07992 * 125.56383 * 0.06692 * 5 4 3 32 32 H 1.07998 * 126.06445 * 179.97438 * 6 5 4 33 33 H 1.07999 * 126.45727 * 179.73991 * 7 6 5 34 34 H 1.08999 * 109.47066 * 83.37268 * 12 11 9 35 35 H 1.09005 * 109.47346 * 203.37232 * 12 11 9 36 36 H 1.08993 * 109.47269 * 323.37338 * 12 11 9 37 37 H 1.08997 * 109.47608 * 59.99532 * 15 13 11 38 38 H 1.09002 * 109.46963 * 180.02562 * 15 13 11 39 39 H 1.09005 * 109.46909 * 299.99995 * 15 13 11 40 40 H 0.96998 * 119.99897 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4442 -0.1221 5 6 4.3786 1.5729 0.9019 6 6 5.6384 1.5296 0.4062 7 6 5.5487 1.3672 -0.9798 8 6 4.2076 1.3161 -1.2957 9 6 3.6386 1.1541 -2.6379 10 8 2.4561 0.8994 -2.7708 11 7 4.4255 1.2874 -3.7239 12 6 5.8502 1.5887 -3.5638 13 6 3.8560 1.1311 -5.0647 14 1 2.7913 0.9121 -4.9840 15 6 4.0513 2.4260 -5.8559 16 6 4.5498 -0.0018 -5.7762 17 1 5.3365 -0.5502 -5.2795 18 6 4.1810 -0.3375 -7.0615 19 7 3.2233 0.3307 -7.6665 20 14 5.0414 -1.7413 -7.9437 21 1 4.8519 -2.9984 -7.1762 22 1 4.4641 -1.8998 -9.3027 23 1 6.4918 -1.4421 -8.0533 24 1 -0.3634 -1.0238 0.0890 25 1 -0.3633 0.5891 0.8420 26 1 -0.3633 0.4348 -0.9312 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7528 1.9294 0.9319 30 1 1.6045 1.9819 -0.8411 31 1 4.1170 1.6901 1.9431 32 1 6.5503 1.6068 0.9796 33 1 6.3743 1.2999 -1.6728 34 1 6.3982 0.6649 -3.3781 35 1 6.2267 2.0581 -4.4727 36 1 5.9857 2.2670 -2.7215 37 1 5.1159 2.6455 -5.9366 38 1 3.6272 2.3098 -6.8533 39 1 3.5494 3.2454 -5.3412 40 1 2.9635 0.0943 -8.5707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701223438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:39 Heat of formation + Delta-G solvation = 24.353911 kcal Electronic energy + Delta-G solvation = -20660.941466 eV Core-core repulsion = 17670.323991 eV Total energy + Delta-G solvation = -2990.617474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17067 -38.42743 -35.60524 -34.75547 -32.92639 -31.03522 -30.04557 -28.08634 -26.59812 -25.67890 -25.19240 -22.56678 -21.75626 -20.52551 -19.74979 -18.53050 -16.76564 -16.31838 -15.65989 -15.12781 -14.99737 -14.78325 -14.20027 -14.00872 -13.78158 -13.17502 -12.80431 -12.67343 -12.39482 -12.35452 -12.20892 -11.87673 -11.71053 -11.53362 -11.19546 -11.04621 -10.86422 -10.71237 -10.65197 -10.49210 -10.23970 -10.13623 -9.18088 -9.00268 -8.47440 -8.41003 -7.93646 -7.52827 -6.05579 -4.13350 1.94845 2.98193 3.02905 3.29862 3.34551 3.37081 4.01100 4.07786 4.42737 4.79917 4.97224 5.10047 5.23489 5.27020 5.28904 5.39107 5.59435 5.67831 5.70539 5.78218 5.85308 6.02440 6.11965 6.24614 6.31673 6.35765 6.37540 6.45344 6.78530 6.84071 7.02416 7.08681 7.28662 7.44940 7.49637 7.57481 7.73247 8.03508 8.20906 8.54408 8.85053 9.07477 9.53055 10.99706 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.005753 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.339901 B = 4865.961631 C = 5458.928109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.411 5.411 5 C -0.002 4.002 6 C -0.213 4.213 7 C -0.170 4.170 8 C -0.029 4.029 9 C 0.570 3.430 10 O -0.559 6.559 11 N -0.576 5.576 12 C 0.069 3.931 13 C 0.260 3.740 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 3.448 15.075 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.084 5.084 5 C -0.137 4.137 6 C -0.237 4.237 7 C -0.196 4.196 8 C -0.144 4.144 9 C 0.358 3.642 10 O -0.441 6.441 11 N -0.306 5.306 12 C -0.075 4.075 13 C 0.160 3.840 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.113 0.887 39 H 0.030 0.970 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.586 3.330 14.777 15.159 hybrid contribution 0.634 -0.793 -0.423 1.100 sum 1.220 2.537 14.354 14.628 Atomic orbital electron populations 1.21639 0.94705 1.01887 1.02021 1.21815 0.96600 0.95605 1.03207 1.21999 0.76662 0.99208 1.03503 1.44049 1.06427 1.52339 1.05610 1.21871 0.89428 1.09431 0.92935 1.20808 0.96234 1.11756 0.94899 1.22223 0.94940 1.06209 0.96201 1.20514 0.91362 1.14931 0.87544 1.17029 0.85995 0.78368 0.82850 1.90731 1.15721 1.50967 1.86667 1.47931 1.08527 1.66785 1.07318 1.22257 0.82668 1.00027 1.02501 1.18973 0.96355 0.93622 0.75005 0.91794 1.22106 0.99051 0.95977 1.03422 1.21291 1.20218 1.15798 0.99018 0.92267 1.24887 0.95051 0.96654 0.97179 1.69873 1.28895 1.40245 1.13712 0.86544 0.79660 0.82505 0.78611 1.20273 1.21187 1.20185 0.92380 0.93112 0.91838 0.89796 0.92368 0.89985 0.88366 0.82219 0.84594 0.82042 0.93010 0.90827 0.90861 0.94990 0.88726 0.96971 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.85 6.06 -26.73 -0.16 -2.01 16 3 C 0.11 1.48 5.33 -4.04 -0.02 1.46 16 4 N -0.41 -6.39 2.76 -112.87 -0.31 -6.70 16 5 C 0.00 -0.03 11.36 -16.91 -0.19 -0.22 16 6 C -0.21 -2.84 10.81 -39.98 -0.43 -3.27 16 7 C -0.17 -2.67 8.70 -39.12 -0.34 -3.01 16 8 C -0.03 -0.54 6.70 -81.98 -0.55 -1.09 16 9 C 0.57 12.55 7.62 -12.85 -0.10 12.45 16 10 O -0.56 -13.70 13.21 5.20 0.07 -13.63 16 11 N -0.58 -12.80 2.75 -176.81 -0.49 -13.29 16 12 C 0.07 1.22 7.91 59.85 0.47 1.69 16 13 C 0.26 6.74 2.62 -69.08 -0.18 6.56 16 14 H 0.06 1.90 6.90 -51.93 -0.36 1.55 16 15 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 16 C -0.52 -14.34 8.37 -34.44 -0.29 -14.63 16 17 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.10 1.56 7.14 -51.93 -0.37 1.18 16 31 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.16 2.29 4.51 -52.49 -0.24 2.06 16 34 H 0.05 0.87 7.51 -51.93 -0.39 0.48 16 35 H 0.07 1.30 6.45 -51.93 -0.33 0.97 16 36 H 0.07 1.12 5.03 -51.93 -0.26 0.86 16 37 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 318.75 15.07 4.80 4.80 Total: -1.00 -31.12 318.75 -7.40 -38.52 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.89 Total: 3.66 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.19 Total: -4.95 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.17 Total: -44.61 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.12 -7.40 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.876 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds