Wall clock time and date at job start Mon Mar 30 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 N 1.46505 * 109.47019 * 185.06937 * 3 2 1 5 5 C 1.35542 * 125.67451 * 261.65026 * 4 3 2 6 6 C 1.35454 * 108.86747 * 180.02562 * 5 4 3 7 7 C 1.39832 * 107.86754 * 359.97438 * 6 5 4 8 8 C 1.37646 * 125.68061 * 81.68402 * 4 3 2 9 9 C 1.46680 * 126.22946 * 359.97438 * 8 4 3 10 10 O 1.21690 * 120.00471 * 347.70044 * 9 8 4 11 11 N 1.34777 * 119.99604 * 167.69890 * 9 8 4 12 12 C 1.46499 * 120.00233 * 0.25299 * 11 9 8 13 13 C 1.46504 * 119.99998 * 180.25250 * 11 9 8 14 14 H 1.09003 * 109.47049 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47176 * 120.00261 * 13 11 9 16 16 C 1.50697 * 109.47228 * 240.00476 * 13 11 9 17 17 H 1.08001 * 120.00120 * 359.97438 * 16 13 11 18 18 C 1.37873 * 120.00413 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99457 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00587 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46888 * 59.99618 * 20 18 16 22 22 H 1.48497 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47089 * 299.99955 * 20 18 16 24 24 H 1.09000 * 109.47218 * 184.96934 * 1 2 3 25 25 H 1.08995 * 109.47266 * 304.97932 * 1 2 3 26 26 H 1.09006 * 109.46847 * 64.97297 * 1 2 3 27 27 H 1.09002 * 109.47557 * 239.99315 * 2 1 3 28 28 H 1.09003 * 109.46980 * 120.00002 * 2 1 3 29 29 H 1.09001 * 109.47308 * 65.07204 * 3 2 1 30 30 H 1.08996 * 109.47323 * 305.06732 * 3 2 1 31 31 H 1.07992 * 125.56383 * 0.06692 * 5 4 3 32 32 H 1.07998 * 126.06445 * 179.97438 * 6 5 4 33 33 H 1.07999 * 126.45727 * 179.73991 * 7 6 5 34 34 H 1.08999 * 109.47066 * 83.37268 * 12 11 9 35 35 H 1.09005 * 109.47346 * 203.37232 * 12 11 9 36 36 H 1.08993 * 109.47269 * 323.37338 * 12 11 9 37 37 H 1.08997 * 109.47608 * 59.99532 * 15 13 11 38 38 H 1.09002 * 109.46963 * 180.02562 * 15 13 11 39 39 H 1.09005 * 109.46909 * 299.99995 * 15 13 11 40 40 H 0.96998 * 119.99897 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4442 -0.1221 5 6 4.3786 1.5729 0.9019 6 6 5.6384 1.5296 0.4062 7 6 5.5487 1.3672 -0.9798 8 6 4.2076 1.3161 -1.2957 9 6 3.6386 1.1541 -2.6379 10 8 2.4561 0.8994 -2.7708 11 7 4.4255 1.2874 -3.7239 12 6 5.8502 1.5887 -3.5638 13 6 3.8560 1.1311 -5.0647 14 1 2.7913 0.9121 -4.9840 15 6 4.0513 2.4260 -5.8559 16 6 4.5498 -0.0018 -5.7762 17 1 5.3365 -0.5502 -5.2795 18 6 4.1810 -0.3375 -7.0615 19 7 3.2233 0.3307 -7.6665 20 14 5.0414 -1.7413 -7.9437 21 1 4.8519 -2.9984 -7.1762 22 1 4.4641 -1.8998 -9.3027 23 1 6.4918 -1.4421 -8.0533 24 1 -0.3634 -1.0238 0.0890 25 1 -0.3633 0.5891 0.8420 26 1 -0.3633 0.4348 -0.9312 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7528 1.9294 0.9319 30 1 1.6045 1.9819 -0.8411 31 1 4.1170 1.6901 1.9431 32 1 6.5503 1.6068 0.9796 33 1 6.3743 1.2999 -1.6728 34 1 6.3982 0.6649 -3.3781 35 1 6.2267 2.0581 -4.4727 36 1 5.9857 2.2670 -2.7215 37 1 5.1159 2.6455 -5.9366 38 1 3.6272 2.3098 -6.8533 39 1 3.5494 3.2454 -5.3412 40 1 2.9635 0.0943 -8.5707 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701223438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:39 Heat of formation + Delta-G solvation = 6.134251 kcal Electronic energy + Delta-G solvation = -20661.731529 eV Core-core repulsion = 17670.323991 eV Total energy + Delta-G solvation = -2991.407538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38002 -40.06891 -37.26045 -36.04460 -34.82815 -32.34021 -31.64769 -29.52989 -28.06102 -27.31139 -26.81316 -24.18262 -22.86766 -21.79343 -21.30570 -19.91100 -18.49609 -17.98292 -17.39251 -16.73075 -16.41439 -16.08723 -15.79602 -15.37275 -14.97041 -14.73235 -14.45224 -13.91982 -13.79459 -13.69814 -13.51582 -13.49539 -12.99069 -12.96797 -12.77066 -12.75138 -12.66574 -12.21893 -12.21802 -12.12561 -11.87963 -11.71547 -11.20871 -10.73841 -10.50500 -9.62806 -9.38495 -9.02911 -8.15563 -6.32473 0.63731 1.40662 1.43189 1.50737 1.80250 1.94548 2.36523 2.49739 2.60340 3.11872 3.75029 3.78409 3.93601 4.18170 4.28680 4.36263 4.42750 4.50640 4.59467 4.67007 4.69620 4.73330 4.77401 4.86400 4.98896 5.02117 5.04444 5.18600 5.25675 5.29257 5.35676 5.44702 5.59303 5.65627 5.92358 6.05500 6.09977 6.14317 6.46500 6.74298 6.80675 7.29846 7.46304 8.88612 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.005753 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.339901 B = 4865.961631 C = 5458.928109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.106 3.894 4 N -0.418 5.418 5 C 0.021 3.979 6 C -0.218 4.218 7 C -0.160 4.160 8 C -0.080 4.080 9 C 0.558 3.442 10 O -0.602 6.602 11 N -0.587 5.587 12 C 0.070 3.930 13 C 0.266 3.734 14 H 0.010 0.990 15 C -0.132 4.132 16 C -0.540 4.540 17 H 0.058 0.942 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.207 0.793 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.018 0.982 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 3.579 17.888 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.014 4.014 4 N -0.091 5.091 5 C -0.114 4.114 6 C -0.241 4.241 7 C -0.186 4.186 8 C -0.192 4.192 9 C 0.349 3.651 10 O -0.487 6.487 11 N -0.317 5.317 12 C -0.072 4.072 13 C 0.164 3.836 14 H 0.028 0.972 15 C -0.190 4.190 16 C -0.578 4.578 17 H 0.077 0.923 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.185 1.185 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.620 3.476 17.598 18.128 hybrid contribution -0.007 -0.819 -1.170 1.428 sum 2.613 2.657 16.428 16.845 Atomic orbital electron populations 1.21613 0.93356 1.02736 1.02072 1.21735 0.97803 0.95526 1.01569 1.22081 0.76090 0.98946 1.04314 1.44254 1.07177 1.52290 1.05415 1.22719 0.88814 1.05724 0.94112 1.21224 0.97851 1.11281 0.93756 1.22481 0.93888 1.04283 0.97962 1.20072 0.92713 1.19852 0.86605 1.17681 0.85561 0.77393 0.84481 1.90693 1.17647 1.52828 1.87536 1.47890 1.10360 1.67283 1.06122 1.22473 0.80025 1.01108 1.03611 1.18558 0.93535 0.94193 0.77317 0.97234 1.21887 0.99975 0.95410 1.01769 1.21528 1.20340 1.16460 0.99480 0.92340 1.25739 0.95649 0.99073 0.97931 1.70016 1.30007 1.41611 1.13981 0.85496 0.79245 0.78939 0.77259 1.20470 1.20678 1.18536 0.91730 0.89874 0.94320 0.94908 0.90257 0.85427 0.91628 0.77658 0.81239 0.81072 0.92074 0.90952 0.88017 0.93206 0.91111 0.96300 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.13 -3.53 6.06 30.59 0.19 -3.35 16 3 C 0.11 2.84 5.33 86.38 0.46 3.30 16 4 N -0.42 -12.29 2.76 -511.02 -1.41 -13.70 16 5 C 0.02 0.45 11.36 83.48 0.95 1.40 16 6 C -0.22 -4.87 10.81 22.01 0.24 -4.63 16 7 C -0.16 -4.65 8.70 22.57 0.20 -4.45 16 8 C -0.08 -2.89 6.70 40.35 0.27 -2.62 16 9 C 0.56 25.85 7.62 86.45 0.66 26.50 16 10 O -0.60 -32.04 13.21 -4.32 -0.06 -32.10 16 11 N -0.59 -27.08 2.75 -831.52 -2.29 -29.37 16 12 C 0.07 2.43 7.91 127.77 1.01 3.44 16 13 C 0.27 14.49 2.62 44.24 0.12 14.60 16 14 H 0.01 0.63 6.90 -2.39 -0.02 0.61 16 15 C -0.13 -6.61 8.96 71.98 0.64 -5.97 16 16 C -0.54 -30.40 8.37 25.60 0.21 -30.19 16 17 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 18 C 0.02 0.88 5.30 84.65 0.45 1.33 16 19 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.03 1.23 7.02 -2.39 -0.02 1.22 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.13 2.18 8.11 -2.39 -0.02 2.16 16 30 H 0.07 2.18 7.14 -2.39 -0.02 2.16 16 31 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.17 4.45 4.51 -2.91 -0.01 4.43 16 34 H 0.06 2.00 7.51 -2.39 -0.02 1.99 16 35 H 0.07 2.51 6.45 -2.38 -0.02 2.50 16 36 H 0.10 2.95 5.03 -2.39 -0.01 2.94 16 37 H 0.05 2.25 6.67 -2.39 -0.02 2.24 16 38 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -73.14 318.75 5.64 -67.50 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 1.03 Total: 18.47 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 6.11 Total: -3.16 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.46 Total: -96.70 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.06 Total: -32.10 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.14 5.64 -67.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.631 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds