Wall clock time and date at job start Mon Mar 30 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47509 * 2 1 4 4 N 1.46501 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.35533 * 125.67640 * 265.49934 * 4 3 2 6 6 C 1.35453 * 108.86940 * 180.13619 * 5 4 3 7 7 C 1.39829 * 107.86320 * 359.60834 * 6 5 4 8 8 C 1.37650 * 125.67836 * 85.19652 * 4 3 2 9 9 C 1.46676 * 126.23249 * 0.02562 * 8 4 3 10 10 O 1.21702 * 120.00267 * 354.75305 * 9 8 4 11 11 N 1.34778 * 119.99953 * 174.74640 * 9 8 4 12 12 C 1.46505 * 120.00008 * 185.24038 * 11 9 8 13 13 H 1.09006 * 109.47081 * 325.00311 * 12 11 9 14 14 C 1.50697 * 109.47300 * 205.00296 * 12 11 9 15 15 H 1.08006 * 119.99600 * 0.02562 * 14 12 11 16 16 C 1.37873 * 120.00184 * 180.02562 * 14 12 11 17 17 N 1.31513 * 120.00046 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99982 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47209 * 90.00150 * 18 16 14 20 20 H 1.48503 * 109.47147 * 210.00120 * 18 16 14 21 21 H 1.48497 * 109.47276 * 330.00082 * 18 16 14 22 22 C 1.52995 * 109.46915 * 85.00485 * 12 11 9 23 23 C 1.53005 * 109.47351 * 294.99708 * 22 12 11 24 24 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46696 * 300.00126 * 1 2 3 26 26 H 1.08999 * 109.46882 * 60.00107 * 1 2 3 27 27 H 1.09005 * 109.47133 * 239.99319 * 2 1 3 28 28 H 1.09009 * 109.47236 * 120.00292 * 2 1 3 29 29 H 1.09000 * 109.47046 * 59.99696 * 3 2 1 30 30 H 1.09004 * 109.46675 * 300.00198 * 3 2 1 31 31 H 1.07997 * 125.56261 * 0.03207 * 5 4 3 32 32 H 1.07996 * 126.06203 * 179.86534 * 6 5 4 33 33 H 1.08007 * 126.45730 * 180.24086 * 7 6 5 34 34 H 0.97000 * 119.99772 * 5.24626 * 11 9 8 35 35 H 0.96996 * 120.00274 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47534 * 54.99774 * 22 12 11 37 37 H 1.09001 * 109.47288 * 174.99852 * 22 12 11 38 38 H 1.09000 * 109.47677 * 179.97438 * 23 22 12 39 39 H 1.08996 * 109.46855 * 300.00482 * 23 22 12 40 40 H 1.09001 * 109.46807 * 59.99850 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2960 1.5286 1.0966 6 6 5.5925 1.5009 0.7054 7 6 5.6177 1.3843 -0.6878 8 6 4.3075 1.3489 -1.1152 9 6 3.8515 1.2329 -2.5044 10 8 2.6647 1.1163 -2.7476 11 7 4.7467 1.2556 -3.5117 12 6 4.2851 1.2555 -4.9021 13 1 3.3827 0.6498 -4.9853 14 6 5.3598 0.6801 -5.7881 15 1 6.2931 0.3473 -5.3584 16 6 5.1515 0.5786 -7.1473 17 7 4.0152 0.9842 -7.6705 18 14 6.4834 -0.1353 -8.2454 19 1 6.2973 -1.6043 -8.3582 20 1 6.3953 0.4798 -9.5942 21 1 7.8164 0.1510 -7.6570 22 6 3.9787 2.6898 -5.3377 23 6 2.8034 3.2308 -4.5211 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5140 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9491 1.6082 2.1163 32 1 6.4538 1.5547 1.3547 33 1 6.4979 1.3318 -1.3116 34 1 5.6966 1.2718 -3.3159 35 1 3.8689 0.9131 -8.6268 36 1 4.8555 3.3154 -5.1709 37 1 3.7209 2.7006 -6.3967 38 1 2.5853 4.2528 -4.8312 39 1 1.9266 2.6052 -4.6880 40 1 3.0612 3.2199 -3.4621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701223567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:44 Heat of formation + Delta-G solvation = -7.470245 kcal Electronic energy + Delta-G solvation = -20503.598292 eV Core-core repulsion = 17511.600819 eV Total energy + Delta-G solvation = -2991.997473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11274 -38.42401 -35.26444 -34.79771 -32.40357 -31.21099 -30.81252 -28.89832 -26.77833 -25.95206 -23.29752 -22.14886 -21.65716 -20.41980 -19.48433 -19.00638 -17.73906 -16.24571 -15.37772 -15.11153 -14.99069 -14.88554 -14.24606 -14.03101 -13.73136 -13.27564 -12.79378 -12.65031 -12.57897 -12.17940 -12.02483 -11.83171 -11.77931 -11.48303 -11.26193 -11.21735 -10.94544 -10.83963 -10.70815 -10.30030 -10.17801 -9.64331 -9.11074 -9.01579 -8.52379 -8.48437 -8.04823 -7.70675 -6.11185 -4.20110 1.91453 2.97290 2.99639 3.26262 3.32999 3.35221 4.05747 4.19000 4.42706 4.77817 4.93110 5.10605 5.20557 5.22566 5.32955 5.46390 5.60417 5.64128 5.67568 5.75139 5.97631 6.16014 6.28034 6.29342 6.37254 6.42961 6.43532 6.63864 6.98458 7.03743 7.19455 7.25861 7.35733 7.45842 7.46203 7.64310 7.76175 7.91886 8.18549 8.69604 8.79677 9.14480 9.47220 10.94315 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.005315 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.119646 B = 5266.967203 C = 5782.703124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.103 3.897 4 N -0.409 5.409 5 C -0.003 4.003 6 C -0.209 4.209 7 C -0.155 4.155 8 C -0.033 4.033 9 C 0.572 3.428 10 O -0.557 6.557 11 N -0.695 5.695 12 C 0.272 3.728 13 H 0.052 0.948 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.128 4.128 23 C -0.137 4.137 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.390 0.610 35 H 0.264 0.736 36 H 0.032 0.968 37 H 0.100 0.900 38 H 0.024 0.976 39 H 0.049 0.951 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 1.361 15.361 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.082 5.082 5 C -0.137 4.137 6 C -0.233 4.233 7 C -0.181 4.181 8 C -0.147 4.147 9 C 0.358 3.642 10 O -0.438 6.438 11 N -0.342 5.342 12 C 0.171 3.829 13 H 0.069 0.931 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.166 4.166 23 C -0.194 4.194 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.223 0.777 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.751 1.319 14.924 15.233 hybrid contribution 1.238 -0.323 -0.401 1.340 sum -1.514 0.996 14.524 14.636 Atomic orbital electron populations 1.21651 0.94679 1.02080 1.01940 1.21800 0.96551 0.95725 1.03046 1.22071 0.76282 0.99004 1.04423 1.44031 1.06388 1.52463 1.05311 1.21864 0.90791 1.09591 0.91456 1.20731 0.95717 1.11724 0.95172 1.21347 0.94798 1.06561 0.95345 1.20616 0.90258 1.15146 0.88673 1.16989 0.86378 0.77717 0.83093 1.90743 1.16276 1.51863 1.84914 1.46233 1.08649 1.71663 1.07635 1.18810 0.96395 0.93528 0.74207 0.93068 1.21233 1.01636 1.42115 0.92135 0.92018 1.24871 0.95792 0.95105 0.97852 1.69890 1.23539 1.46125 1.12527 0.86454 0.81774 0.79185 0.79734 1.20586 1.21101 1.19801 1.21940 0.95060 0.96913 1.02735 1.21814 1.00135 0.98257 0.99242 0.92325 0.93000 0.91895 0.90269 0.92231 0.90064 0.87625 0.82158 0.84572 0.84093 0.77669 0.92587 0.94909 0.88150 0.95707 0.93155 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.71 6.19 -26.73 -0.17 -1.87 16 3 C 0.10 1.37 5.38 -4.04 -0.02 1.35 16 4 N -0.41 -6.13 2.76 -112.88 -0.31 -6.44 16 5 C 0.00 -0.03 11.37 -16.91 -0.19 -0.22 16 6 C -0.21 -2.75 10.81 -39.98 -0.43 -3.19 16 7 C -0.15 -2.37 10.35 -39.12 -0.41 -2.78 16 8 C -0.03 -0.57 6.88 -81.98 -0.56 -1.14 16 9 C 0.57 11.82 6.14 -12.85 -0.08 11.74 16 10 O -0.56 -12.64 11.83 5.19 0.06 -12.58 16 11 N -0.69 -14.84 5.01 -56.24 -0.28 -15.12 16 12 C 0.27 6.85 2.25 -69.08 -0.16 6.69 16 13 H 0.05 1.49 7.51 -51.93 -0.39 1.10 16 14 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 17 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 23 C -0.14 -3.05 8.58 37.16 0.32 -2.73 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.28 7.61 -51.93 -0.40 0.89 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.11 1.65 6.72 -51.93 -0.35 1.30 16 31 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.14 1.95 7.45 -52.48 -0.39 1.56 16 34 H 0.39 7.46 7.44 -40.82 -0.30 7.16 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 1.18 7.92 -51.93 -0.41 0.76 16 40 H 0.03 0.77 5.75 -51.93 -0.30 0.48 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -29.57 324.59 -8.10 -37.67 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.19 Total: 9.26 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.87 Total: -9.26 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.03 Total: -45.58 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.58 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.57 -8.10 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.196 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds