Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 N 1.46504 * 109.47353 * 185.09903 * 3 2 1 5 5 C 1.35527 * 125.67702 * 262.32393 * 4 3 2 6 6 C 1.35455 * 108.87305 * 179.82605 * 5 4 3 7 7 C 1.39834 * 107.86150 * 0.42822 * 6 5 4 8 8 C 1.37656 * 125.67600 * 82.62746 * 4 3 2 9 9 C 1.46675 * 126.23572 * 359.97438 * 8 4 3 10 10 O 1.21693 * 119.99675 * 348.84550 * 9 8 4 11 11 N 1.34775 * 119.99785 * 168.83875 * 9 8 4 12 12 C 1.46491 * 120.00150 * 1.99406 * 11 9 8 13 13 C 1.52995 * 109.47460 * 82.32372 * 12 11 9 14 14 C 1.46505 * 119.99645 * 181.99393 * 11 9 8 15 15 C 1.50696 * 109.47232 * 90.00098 * 14 11 9 16 16 H 1.08000 * 120.00055 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99828 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00379 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47731 * 59.99926 * 19 17 15 21 21 H 1.48503 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47387 * 299.99542 * 19 17 15 23 23 H 1.09001 * 109.46830 * 64.95550 * 1 2 3 24 24 H 1.08990 * 109.47067 * 184.95559 * 1 2 3 25 25 H 1.09000 * 109.46957 * 304.95798 * 1 2 3 26 26 H 1.09004 * 109.47727 * 239.99869 * 2 1 3 27 27 H 1.09000 * 109.47473 * 120.00036 * 2 1 3 28 28 H 1.09002 * 109.47313 * 65.09789 * 3 2 1 29 29 H 1.08994 * 109.47092 * 305.09752 * 3 2 1 30 30 H 1.08000 * 125.56873 * 359.97438 * 5 4 3 31 31 H 1.07994 * 126.07107 * 180.16776 * 6 5 4 32 32 H 1.08006 * 126.45894 * 179.75364 * 7 6 5 33 33 H 1.09002 * 109.47481 * 202.32811 * 12 11 9 34 34 H 1.09001 * 109.47691 * 322.32504 * 12 11 9 35 35 H 1.09002 * 109.46845 * 66.88962 * 13 12 11 36 36 H 1.09000 * 109.47749 * 186.88436 * 13 12 11 37 37 H 1.09005 * 109.47373 * 306.89221 * 13 12 11 38 38 H 1.09000 * 109.46608 * 210.00175 * 14 11 9 39 39 H 1.09001 * 109.46715 * 329.99775 * 14 11 9 40 40 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4999 1.4443 -0.1228 5 6 4.3792 1.5600 0.9021 6 6 5.6388 1.5170 0.4057 7 6 5.5481 1.3788 -0.9828 8 6 4.2068 1.3348 -1.2989 9 6 3.6369 1.1958 -2.6432 10 8 2.4498 0.9655 -2.7800 11 7 4.4280 1.3233 -3.7269 12 6 5.8646 1.5572 -3.5617 13 6 6.5729 0.2244 -3.3111 14 6 3.8510 1.2280 -5.0702 15 6 3.4251 2.5976 -5.5324 16 1 3.5701 3.4536 -4.8900 17 6 2.8513 2.7581 -6.7757 18 7 2.6753 1.7159 -7.5582 19 14 2.3240 4.4560 -7.3489 20 1 3.5041 5.3569 -7.3794 21 1 1.7402 4.3595 -8.7109 22 1 1.3089 5.0015 -6.4123 23 1 -0.3633 0.4350 -0.9311 24 1 -0.3633 -1.0237 0.0888 25 1 -0.3633 0.5888 0.8423 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7532 1.9293 0.9321 29 1 1.6041 1.9820 -0.8408 30 1 4.1182 1.6665 1.9447 31 1 6.5511 1.5824 0.9799 32 1 6.3733 1.3177 -1.6769 33 1 6.2643 2.0168 -4.4656 34 1 6.0295 2.2213 -2.7132 35 1 6.5123 -0.3933 -4.2072 36 1 7.6191 0.4090 -3.0673 37 1 6.0919 -0.2922 -2.4805 38 1 4.5960 0.8278 -5.7579 39 1 2.9850 0.5665 -5.0475 40 1 2.2713 1.8287 -8.4328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701224467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = 8.226437 kcal Electronic energy + Delta-G solvation = -20707.614680 eV Core-core repulsion = 17716.297866 eV Total energy + Delta-G solvation = -2991.316814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.43974 -40.01813 -37.36642 -35.88640 -34.99605 -32.49523 -31.63098 -30.42537 -28.71250 -26.93825 -25.23975 -24.41548 -22.93064 -22.16728 -21.46298 -19.84381 -18.66538 -18.14756 -17.21824 -16.88574 -16.31908 -16.07705 -15.90981 -15.51775 -15.28917 -14.67515 -14.31704 -14.19326 -13.71423 -13.66772 -13.61961 -13.28621 -13.14978 -12.98498 -12.76083 -12.68118 -12.58059 -12.38147 -12.24568 -12.13196 -11.84140 -11.71819 -11.68416 -10.69679 -10.66004 -9.61680 -9.45126 -9.02658 -8.24130 -6.39913 0.65682 1.34241 1.38319 1.46083 1.79523 1.96060 2.32340 2.52156 2.57279 3.04433 3.72163 3.76828 3.92624 4.11541 4.18001 4.29534 4.35981 4.37114 4.48664 4.57174 4.66416 4.67915 4.77318 4.88633 4.95930 5.01156 5.02486 5.16368 5.20337 5.27695 5.29159 5.35314 5.43434 5.55660 5.81391 5.99323 6.04010 6.10161 6.47087 6.67363 6.76537 7.25048 7.45258 8.82475 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.006410 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.747925 B = 4367.028132 C = 5223.192209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.104 3.896 4 N -0.418 5.418 5 C 0.019 3.981 6 C -0.218 4.218 7 C -0.165 4.165 8 C -0.081 4.081 9 C 0.562 3.438 10 O -0.597 6.597 11 N -0.590 5.590 12 C 0.081 3.919 13 C -0.168 4.168 14 C 0.267 3.733 15 C -0.545 4.545 16 H 0.050 0.950 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.968 3.032 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.279 1.279 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.025 0.975 39 H -0.002 1.002 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -0.584 18.784 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.017 4.017 4 N -0.091 5.091 5 C -0.116 4.116 6 C -0.241 4.241 7 C -0.191 4.191 8 C -0.194 4.194 9 C 0.352 3.648 10 O -0.481 6.481 11 N -0.320 5.320 12 C -0.041 4.041 13 C -0.226 4.226 14 C 0.145 3.855 15 C -0.583 4.583 16 H 0.068 0.932 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.204 1.204 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.222 0.778 31 H 0.189 0.811 32 H 0.201 0.799 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.016 0.984 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.115 -0.763 18.491 19.201 hybrid contribution -0.698 0.519 -1.133 1.429 sum 4.417 -0.245 17.358 17.912 Atomic orbital electron populations 1.21621 0.93507 1.02824 1.01940 1.21709 0.97658 0.95213 1.01689 1.22087 0.76308 0.99209 1.04101 1.44245 1.07091 1.52439 1.05373 1.22719 0.88907 1.05882 0.94061 1.21252 0.97766 1.11287 0.93813 1.22819 0.94117 1.04089 0.98034 1.20088 0.92788 1.20170 0.86370 1.17631 0.85469 0.77203 0.84452 1.90704 1.17297 1.52539 1.87567 1.47914 1.09117 1.68967 1.05999 1.22367 0.78872 0.98982 1.03852 1.22335 1.01947 0.96510 1.01766 1.18737 0.92825 0.95962 0.77933 1.21644 1.41226 0.94111 1.01353 0.93188 1.25851 0.95233 1.01404 0.96456 1.70043 1.44506 1.31680 1.10447 0.85469 0.78892 0.79142 0.77315 1.18413 1.20003 1.20444 0.94583 0.91402 0.90037 0.94771 0.89920 0.85643 0.92042 0.77799 0.81088 0.79920 0.90560 0.87558 0.93513 0.87480 0.92297 0.95721 0.98433 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.44 6.08 30.59 0.19 -3.25 16 3 C 0.10 2.92 5.34 86.38 0.46 3.38 16 4 N -0.42 -12.64 2.76 -511.01 -1.41 -14.05 16 5 C 0.02 0.42 11.36 83.48 0.95 1.37 16 6 C -0.22 -4.82 10.81 22.01 0.24 -4.58 16 7 C -0.16 -4.71 7.36 22.57 0.17 -4.54 16 8 C -0.08 -2.99 6.65 40.35 0.27 -2.72 16 9 C 0.56 26.53 7.51 86.45 0.65 27.18 16 10 O -0.60 -32.77 13.55 -4.33 -0.06 -32.83 16 11 N -0.59 -27.58 2.48 -830.90 -2.06 -29.64 16 12 C 0.08 2.80 5.63 86.38 0.49 3.28 16 13 C -0.17 -4.59 8.49 71.98 0.61 -3.98 16 14 C 0.27 15.16 5.14 85.63 0.44 15.60 16 15 C -0.54 -32.70 9.39 25.60 0.24 -32.46 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 17 C 0.01 0.57 5.46 84.65 0.46 1.04 16 18 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 19 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.25 7.18 -2.39 -0.02 1.24 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.13 2.36 8.11 -2.39 -0.02 2.34 16 29 H 0.06 2.22 7.05 -2.39 -0.02 2.21 16 30 H 0.21 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.18 4.57 3.18 -2.91 -0.01 4.56 16 33 H 0.08 2.68 8.01 -2.39 -0.02 2.67 16 34 H 0.11 3.23 4.87 -2.39 -0.01 3.22 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 2.01 8.11 -2.39 -0.02 1.99 16 37 H 0.06 1.69 6.36 -2.38 -0.02 1.68 16 38 H 0.02 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.00 -0.16 7.39 -2.39 -0.02 -0.18 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -77.83 323.35 5.67 -72.15 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.02 Total: 15.74 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.87 Total: -2.33 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.18 Total: -100.70 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.06 Total: -32.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.83 5.67 -72.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701224467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.381 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds