Wall clock time and date at job start Mon Mar 30 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 7 7 C 1.50701 * 126.03424 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47711 * 145.00675 * 7 6 5 9 9 C 1.53097 * 109.48019 * 265.03234 * 7 6 5 10 10 C 1.53176 * 109.16281 * 177.59561 * 9 7 6 11 11 C 1.53182 * 109.03560 * 303.01980 * 10 9 7 12 12 C 1.53094 * 109.16048 * 56.98480 * 11 10 9 13 13 H 1.09005 * 109.48671 * 182.40658 * 12 11 10 14 14 C 1.50698 * 109.48374 * 62.37310 * 12 11 10 15 15 H 1.07997 * 120.00161 * 0.05636 * 14 12 11 16 16 C 1.37876 * 119.99614 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99826 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 120.00281 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47070 * 90.00029 * 18 16 14 20 20 H 1.48506 * 109.46674 * 209.99797 * 18 16 14 21 21 H 1.48493 * 109.47134 * 329.99689 * 18 16 14 22 22 O 1.42900 * 109.48562 * 24.97708 * 7 6 5 23 23 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 24 24 C 1.50703 * 126.12821 * 0.04077 * 23 3 2 25 25 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 26 26 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 27 27 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 29 29 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 30 30 H 1.08000 * 125.90525 * 179.81578 * 5 4 3 31 31 H 1.09000 * 109.52421 * 297.50254 * 9 7 6 32 32 H 1.09003 * 109.52177 * 57.68848 * 9 7 6 33 33 H 1.08997 * 109.54380 * 183.15746 * 10 9 7 34 34 H 1.08995 * 109.61679 * 62.93145 * 10 9 7 35 35 H 1.08995 * 109.52561 * 297.07479 * 11 10 9 36 36 H 1.09007 * 109.57380 * 176.91450 * 11 10 9 37 37 H 0.96994 * 120.00132 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47152 * 269.68605 * 24 23 3 39 39 H 1.09001 * 109.46980 * 149.68706 * 24 23 3 40 40 H 1.09004 * 109.47113 * 29.68687 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 2.7158 3.3394 0.6666 7 6 3.1296 4.4916 1.5453 8 1 2.5101 4.5057 2.4420 9 6 4.5992 4.3287 1.9426 10 6 5.0288 5.5335 2.7853 11 6 4.7816 6.8163 1.9855 12 6 3.3050 6.8831 1.5867 13 1 3.1319 7.7726 0.9808 14 6 2.4517 6.9461 2.8272 15 1 2.9155 6.9400 3.8025 16 6 1.0790 7.0120 2.7170 17 7 0.3342 7.0664 3.7996 18 14 0.2768 7.0225 1.0300 19 1 -0.0049 5.6272 0.6071 20 1 -0.9947 7.7874 1.0914 21 1 1.1920 7.6615 0.0507 22 8 2.9637 5.7187 0.8320 23 6 2.2828 2.1298 1.0913 24 6 2.1297 1.6943 2.5258 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0035 4.1518 -1.3710 31 1 4.7200 3.4152 2.5248 32 1 5.2152 4.2737 1.0450 33 1 6.0891 5.4516 3.0245 34 1 4.4480 5.5609 3.7072 35 1 5.4012 6.8116 1.0888 36 1 5.0331 7.6825 2.5976 37 1 -0.6315 7.1124 3.7221 38 1 1.1255 1.9363 2.8738 39 1 2.8630 2.2131 3.1433 40 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703742658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:44 Heat of formation + Delta-G solvation = 16.962415 kcal Electronic energy + Delta-G solvation = -21167.627654 eV Core-core repulsion = 18176.689661 eV Total energy + Delta-G solvation = -2990.937994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99333 -38.28322 -34.46637 -32.82824 -32.51430 -32.09412 -30.58188 -28.63198 -26.80008 -25.59784 -23.83050 -22.91855 -21.93099 -20.26411 -18.95902 -18.75704 -16.88193 -16.18665 -15.23200 -15.09053 -14.67512 -14.44662 -14.12047 -13.80709 -13.54058 -13.23912 -12.91756 -12.69655 -12.49980 -12.40026 -12.21197 -12.07284 -11.81436 -11.65422 -11.49532 -11.29566 -10.69251 -10.65405 -10.29661 -10.23340 -9.96533 -9.68176 -9.62029 -8.88342 -8.78839 -8.58774 -8.19416 -7.66051 -6.08113 -4.16492 2.19309 2.76701 3.25653 3.49194 3.54383 3.66225 4.54092 4.56400 4.85852 4.92771 5.00885 5.07772 5.29893 5.32234 5.42192 5.50937 5.62826 5.71508 5.74657 5.77614 5.82568 5.95439 6.08477 6.15008 6.17388 6.21427 6.40122 6.47588 6.50381 6.69365 6.86752 6.87807 6.98043 7.07826 7.17928 7.36939 7.42320 7.68970 8.09355 8.29036 8.74436 8.94496 9.56708 11.01877 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.007845 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.506751 B = 3568.095033 C = 4127.118846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.378 5.378 4 N -0.312 5.312 5 C 0.072 3.928 6 C -0.212 4.212 7 C 0.178 3.822 8 H 0.077 0.923 9 C -0.131 4.131 10 C -0.111 4.111 11 C -0.131 4.131 12 C 0.172 3.828 13 H 0.064 0.936 14 C -0.545 4.545 15 H 0.076 0.924 16 C 0.084 3.916 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.307 1.307 21 H -0.265 1.265 22 O -0.393 6.393 23 C 0.081 3.919 24 C -0.091 4.091 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -12.873 -4.130 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.162 5.162 4 N -0.132 5.132 5 C -0.113 4.113 6 C -0.224 4.224 7 C 0.119 3.881 8 H 0.094 0.906 9 C -0.169 4.169 10 C -0.149 4.149 11 C -0.168 4.168 12 C 0.117 3.883 13 H 0.082 0.918 14 C -0.582 4.582 15 H 0.094 0.906 16 C -0.120 4.120 17 N -0.532 5.532 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.235 1.235 21 H -0.190 1.190 22 O -0.314 6.314 23 C -0.045 4.045 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.710 -13.747 -5.270 15.183 hybrid contribution -0.345 0.559 0.110 0.666 sum 3.365 -13.188 -5.160 14.555 Atomic orbital electron populations 1.22191 0.94683 1.02562 1.03456 1.21508 0.94989 0.78618 1.03727 1.48458 1.52649 1.11677 1.03442 1.77262 1.23412 1.04671 1.07904 1.23680 0.97828 0.94879 0.94947 1.19874 1.12480 0.95731 0.94265 1.19716 0.93587 0.81749 0.93038 0.90568 1.22038 0.97767 0.97715 0.99352 1.21477 0.99005 0.94754 0.99616 1.21966 0.98884 0.97421 0.98570 1.20278 0.90954 0.84685 0.92432 0.91815 1.21446 0.91318 1.52288 0.93144 0.90594 1.24984 0.97447 0.92760 0.96808 1.69956 1.05400 1.49319 1.28507 0.86437 0.77306 0.78622 0.84740 1.20121 1.23510 1.18983 1.87723 1.87437 1.13939 1.42257 1.20640 1.00983 0.92375 0.90532 1.20460 1.04098 1.00990 0.89349 0.91894 0.91713 0.90872 0.89201 0.89374 0.80129 0.92744 0.92645 0.93867 0.90856 0.93827 0.92149 0.92730 0.90151 0.89378 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 37.15 0.38 -1.38 16 2 C 0.13 1.47 6.96 -4.04 -0.03 1.44 16 3 N -0.38 -6.04 3.61 -57.14 -0.21 -6.25 16 4 N -0.31 -5.74 12.58 30.63 0.39 -5.36 16 5 C 0.07 1.39 11.49 -17.36 -0.20 1.19 16 6 C -0.21 -4.14 5.23 -105.05 -0.55 -4.69 16 7 C 0.18 3.73 2.38 -27.83 -0.07 3.66 16 8 H 0.08 1.80 6.96 -51.93 -0.36 1.44 16 9 C -0.13 -2.36 5.40 -26.59 -0.14 -2.50 16 10 C -0.11 -2.05 5.78 -26.55 -0.15 -2.20 16 11 C -0.13 -2.60 5.59 -26.59 -0.15 -2.75 16 12 C 0.17 4.07 2.64 -27.84 -0.07 3.99 16 13 H 0.06 1.55 7.20 -51.93 -0.37 1.17 16 14 C -0.54 -14.74 7.17 -34.44 -0.25 -14.99 16 15 H 0.08 2.20 7.12 -52.49 -0.37 1.82 16 16 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 18 Si 0.90 23.43 26.18 -169.99 -4.45 18.98 16 19 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 21 H -0.27 -6.75 6.54 56.52 0.37 -6.38 16 22 O -0.39 -9.18 7.53 -35.23 -0.27 -9.44 16 23 C 0.08 1.37 6.93 -82.27 -0.57 0.80 16 24 C -0.09 -1.21 9.81 36.01 0.35 -0.86 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.75 7.04 -51.93 -0.37 0.39 16 30 H 0.18 3.26 8.06 -52.49 -0.42 2.83 16 31 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.48 6.85 -51.93 -0.36 1.12 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.18 7.50 -51.93 -0.39 0.79 16 40 H 0.06 0.65 7.07 -51.93 -0.37 0.29 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -32.03 316.84 -6.92 -38.94 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.38 Total: 0.39 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.54 Total: -15.99 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.95 Total: -37.65 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.27 Total: -9.44 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.45 Total: 18.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.03 -6.92 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703742658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.904 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds