Wall clock time and date at job start Mon Mar 30 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 7 7 C 1.50701 * 126.03424 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47711 * 145.00675 * 7 6 5 9 9 C 1.53097 * 109.48019 * 265.03234 * 7 6 5 10 10 C 1.53176 * 109.16281 * 177.59561 * 9 7 6 11 11 C 1.53182 * 109.03560 * 303.01980 * 10 9 7 12 12 C 1.53094 * 109.16048 * 56.98480 * 11 10 9 13 13 H 1.09005 * 109.48671 * 182.40658 * 12 11 10 14 14 C 1.50698 * 109.48374 * 62.37310 * 12 11 10 15 15 H 1.07997 * 120.00161 * 0.05636 * 14 12 11 16 16 C 1.37876 * 119.99614 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99826 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 120.00281 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47070 * 90.00029 * 18 16 14 20 20 H 1.48506 * 109.46674 * 209.99797 * 18 16 14 21 21 H 1.48493 * 109.47134 * 329.99689 * 18 16 14 22 22 O 1.42900 * 109.48562 * 24.97708 * 7 6 5 23 23 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 24 24 C 1.50703 * 126.12821 * 0.04077 * 23 3 2 25 25 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 26 26 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 27 27 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 29 29 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 30 30 H 1.08000 * 125.90525 * 179.81578 * 5 4 3 31 31 H 1.09000 * 109.52421 * 297.50254 * 9 7 6 32 32 H 1.09003 * 109.52177 * 57.68848 * 9 7 6 33 33 H 1.08997 * 109.54380 * 183.15746 * 10 9 7 34 34 H 1.08995 * 109.61679 * 62.93145 * 10 9 7 35 35 H 1.08995 * 109.52561 * 297.07479 * 11 10 9 36 36 H 1.09007 * 109.57380 * 176.91450 * 11 10 9 37 37 H 0.96994 * 120.00132 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47152 * 269.68605 * 24 23 3 39 39 H 1.09001 * 109.46980 * 149.68706 * 24 23 3 40 40 H 1.09004 * 109.47113 * 29.68687 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 2.7158 3.3394 0.6666 7 6 3.1296 4.4916 1.5453 8 1 2.5101 4.5057 2.4420 9 6 4.5992 4.3287 1.9426 10 6 5.0288 5.5335 2.7853 11 6 4.7816 6.8163 1.9855 12 6 3.3050 6.8831 1.5867 13 1 3.1319 7.7726 0.9808 14 6 2.4517 6.9461 2.8272 15 1 2.9155 6.9400 3.8025 16 6 1.0790 7.0120 2.7170 17 7 0.3342 7.0664 3.7996 18 14 0.2768 7.0225 1.0300 19 1 -0.0049 5.6272 0.6071 20 1 -0.9947 7.7874 1.0914 21 1 1.1920 7.6615 0.0507 22 8 2.9637 5.7187 0.8320 23 6 2.2828 2.1298 1.0913 24 6 2.1297 1.6943 2.5258 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0035 4.1518 -1.3710 31 1 4.7200 3.4152 2.5248 32 1 5.2152 4.2737 1.0450 33 1 6.0891 5.4516 3.0245 34 1 4.4480 5.5609 3.7072 35 1 5.4012 6.8116 1.0888 36 1 5.0331 7.6825 2.5976 37 1 -0.6315 7.1124 3.7221 38 1 1.1255 1.9363 2.8738 39 1 2.8630 2.2131 3.1433 40 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703742658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:44 Heat of formation + Delta-G solvation = -2.984068 kcal Electronic energy + Delta-G solvation = -21168.492599 eV Core-core repulsion = 18176.689661 eV Total energy + Delta-G solvation = -2991.802938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32079 -39.98808 -35.58127 -34.67156 -34.21339 -33.66616 -32.00280 -29.95344 -28.25187 -27.34729 -25.02945 -24.37273 -23.61113 -21.58467 -20.54093 -20.25343 -18.74999 -17.61710 -16.93685 -16.39950 -16.16946 -16.02916 -15.60586 -15.45304 -14.98429 -14.63627 -14.44145 -14.07971 -13.90833 -13.80065 -13.53538 -13.33965 -13.21181 -13.04755 -12.80640 -12.69553 -12.45822 -12.18721 -11.91538 -11.79587 -11.74119 -11.53529 -11.22294 -10.83808 -10.58902 -10.15690 -9.95030 -9.11572 -8.31296 -6.39210 0.88042 1.35767 1.41699 1.53576 1.63337 1.81583 2.38761 2.96586 3.35786 3.71111 3.81485 4.08280 4.09799 4.15832 4.25411 4.26800 4.28969 4.39066 4.55135 4.62353 4.64336 4.70229 4.77429 4.78031 4.91629 5.00779 5.02668 5.07074 5.17950 5.21201 5.27998 5.31943 5.39446 5.48309 5.60942 5.72500 5.75668 6.14610 6.19634 6.69587 6.73406 6.93443 7.36180 8.82296 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.007845 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.506751 B = 3568.095033 C = 4127.118846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 N -0.371 5.371 4 N -0.328 5.328 5 C 0.056 3.944 6 C -0.249 4.249 7 C 0.182 3.818 8 H 0.040 0.960 9 C -0.122 4.122 10 C -0.109 4.109 11 C -0.127 4.127 12 C 0.168 3.832 13 H 0.058 0.942 14 C -0.530 4.530 15 H 0.050 0.950 16 C 0.040 3.960 17 N -0.935 5.935 18 Si 0.948 3.052 19 H -0.289 1.289 20 H -0.306 1.306 21 H -0.255 1.255 22 O -0.404 6.404 23 C 0.088 3.912 24 C -0.090 4.090 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.182 0.818 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -15.008 -4.703 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.155 5.155 4 N -0.150 5.150 5 C -0.129 4.129 6 C -0.260 4.260 7 C 0.123 3.877 8 H 0.058 0.942 9 C -0.160 4.160 10 C -0.146 4.146 11 C -0.165 4.165 12 C 0.112 3.888 13 H 0.075 0.925 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.159 4.159 17 N -0.575 5.575 18 Si 0.778 3.222 19 H -0.216 1.216 20 H -0.234 1.234 21 H -0.179 1.179 22 O -0.324 6.324 23 C -0.040 4.040 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.198 0.802 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.837 -15.890 -5.864 17.614 hybrid contribution -0.695 1.109 0.320 1.347 sum 4.142 -14.781 -5.544 16.321 Atomic orbital electron populations 1.22168 0.94107 1.04370 1.01735 1.22031 0.95442 0.76302 1.06124 1.48890 1.51185 1.12900 1.02479 1.77188 1.23797 1.04745 1.09261 1.23739 0.98649 0.95442 0.95027 1.19905 1.15313 0.96444 0.94384 1.19688 0.94963 0.81254 0.91775 0.94174 1.21972 0.95683 0.98455 0.99890 1.21456 1.00672 0.94199 0.98266 1.21912 0.96321 0.98464 0.99807 1.20235 0.92927 0.84908 0.90692 0.92477 1.21665 0.91430 1.50098 0.93595 0.93202 1.25550 0.98262 0.93248 0.98886 1.70044 1.05634 1.51801 1.30003 0.85659 0.76758 0.77664 0.82150 1.21576 1.23404 1.17932 1.87668 1.87821 1.14645 1.42296 1.21083 0.99041 0.91716 0.92143 1.20580 1.03793 1.03561 0.86904 0.92987 0.94001 0.87308 0.87862 0.85953 0.80150 0.90601 0.91678 0.90506 0.93322 0.91590 0.91879 0.92725 0.90501 0.89615 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.24 71.98 0.74 -2.25 16 2 C 0.12 2.26 6.96 86.38 0.60 2.86 16 3 N -0.37 -11.09 3.61 -334.69 -1.21 -12.30 16 4 N -0.33 -11.78 12.58 -57.02 -0.72 -12.50 16 5 C 0.06 2.14 11.49 85.24 0.98 3.12 16 6 C -0.25 -9.57 5.23 -20.14 -0.11 -9.67 16 7 C 0.18 7.57 2.38 29.88 0.07 7.64 16 8 H 0.04 1.94 6.96 -2.39 -0.02 1.93 16 9 C -0.12 -4.19 5.40 30.69 0.17 -4.02 16 10 C -0.11 -3.82 5.78 30.71 0.18 -3.64 16 11 C -0.13 -4.88 5.59 30.69 0.17 -4.71 16 12 C 0.17 7.93 2.64 29.88 0.08 8.01 16 13 H 0.06 2.75 7.20 -2.38 -0.02 2.73 16 14 C -0.53 -29.26 7.17 25.60 0.18 -29.08 16 15 H 0.05 2.97 7.12 -2.91 -0.02 2.95 16 16 C 0.04 2.34 5.47 84.65 0.46 2.80 16 17 N -0.93 -57.57 13.96 21.45 0.30 -57.28 16 18 Si 0.95 49.30 26.18 68.60 1.80 51.10 16 19 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 20 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 21 H -0.26 -12.71 6.54 99.48 0.65 -12.06 16 22 O -0.40 -18.78 7.53 -148.98 -1.12 -19.90 16 23 C 0.09 2.85 6.93 41.40 0.29 3.13 16 24 C -0.09 -2.21 9.81 71.24 0.70 -1.51 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.12 1.49 7.04 -2.39 -0.02 1.48 16 30 H 0.18 6.56 8.06 -2.91 -0.02 6.54 16 31 H 0.08 2.26 7.75 -2.39 -0.02 2.24 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.95 6.85 -2.39 -0.02 1.93 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 2.15 7.50 -2.39 -0.02 2.13 16 40 H 0.10 1.68 7.07 -2.38 -0.02 1.66 16 Total: -1.00 -70.69 316.84 4.51 -66.18 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.95 Total: 12.01 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.51 Total: -27.32 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.63 Total: -82.07 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.12 Total: -19.90 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.80 Total: 51.10 kcal Total: -70.69 4.51 -66.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703742658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.197 kcal (2) G-P(sol) polarization free energy of solvation -70.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds