Wall clock time and date at job start Mon Mar 30 2020 07:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46894 * 2 1 4 4 N 1.40088 * 126.03690 * 270.02054 * 3 2 1 5 5 C 1.30831 * 108.20570 * 179.69859 * 4 3 2 6 6 C 1.39873 * 108.20414 * 0.44240 * 5 4 3 7 7 C 1.50689 * 126.04142 * 179.81412 * 6 5 4 8 8 H 1.09003 * 110.35651 * 214.00106 * 7 6 5 9 9 C 1.54947 * 110.31190 * 91.85872 * 7 6 5 10 10 C 1.55310 * 100.94399 * 204.64144 * 9 7 6 11 11 C 1.54376 * 102.25097 * 34.13221 * 10 9 7 12 12 C 1.53002 * 109.90960 * 98.20254 * 11 10 9 13 13 C 1.50702 * 109.82728 * 219.12824 * 11 10 9 14 14 H 1.08002 * 120.00299 * 359.59348 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.30907 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 O 1.43235 * 107.59255 * 338.64306 * 11 10 9 22 22 C 1.34949 * 126.03856 * 90.00580 * 3 2 1 23 23 C 1.50694 * 126.12651 * 0.03261 * 22 3 2 24 24 H 1.08999 * 109.47055 * 60.00056 * 1 2 3 25 25 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47063 * 300.00171 * 1 2 3 27 27 H 1.08997 * 109.47205 * 239.99724 * 2 1 3 28 28 H 1.09005 * 109.46910 * 119.99523 * 2 1 3 29 29 H 1.07998 * 125.89652 * 180.25358 * 5 4 3 30 30 H 1.09007 * 111.12103 * 322.56168 * 9 7 6 31 31 H 1.08996 * 111.12600 * 86.71972 * 9 7 6 32 32 H 1.08996 * 110.84239 * 275.94186 * 10 9 7 33 33 H 1.09001 * 110.84550 * 152.32144 * 10 9 7 34 34 H 1.08995 * 109.47226 * 180.22797 * 12 11 10 35 35 H 1.09007 * 109.46768 * 300.23385 * 12 11 10 36 36 H 1.08997 * 109.46649 * 60.22336 * 12 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47385 * 269.97970 * 23 22 3 39 39 H 1.08995 * 109.47161 * 29.97852 * 23 22 3 40 40 H 1.09000 * 109.47087 * 149.97954 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2926 2.1584 -1.1328 5 6 2.7017 3.3348 -0.7322 6 6 2.7107 3.3413 0.6665 7 6 3.1187 4.4955 1.5451 8 1 3.6007 4.1300 2.4519 9 6 1.8845 5.3610 1.9037 10 6 2.5589 6.7285 2.1988 11 6 3.7350 6.7363 1.1988 12 6 3.3567 7.5444 -0.0441 13 6 4.9543 7.3385 1.8482 14 1 4.9048 7.6901 2.8682 15 6 6.1346 7.4353 1.1422 16 7 6.1949 7.0072 -0.0999 17 14 7.6480 8.1748 1.9498 18 1 8.0109 7.3748 3.1472 19 1 8.7780 8.1648 0.9862 20 1 7.3583 9.5729 2.3577 21 8 4.0007 5.3773 0.8324 22 6 2.2830 2.1298 1.0912 23 6 2.1300 1.6943 2.5257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.9864 4.1576 -1.3711 30 1 1.1983 5.4353 1.0600 31 1 1.3770 4.9744 2.7875 32 1 2.9225 6.7680 3.2256 33 1 1.8727 7.5510 1.9971 34 1 4.1900 7.5419 -0.7467 35 1 2.4820 7.0968 -0.5161 36 1 3.1284 8.5702 0.2452 37 1 7.0252 7.0757 -0.5967 38 1 1.1241 1.9317 2.8722 39 1 2.2951 0.6194 2.5988 40 1 2.8600 2.2169 3.1439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703743056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:59 Heat of formation + Delta-G solvation = 25.052539 kcal Electronic energy + Delta-G solvation = -20747.577727 eV Core-core repulsion = 17756.990548 eV Total energy + Delta-G solvation = -2990.587179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94663 -38.14631 -34.45400 -33.03651 -32.05968 -30.87284 -30.12595 -28.58831 -26.80328 -25.19693 -24.26634 -23.32302 -21.31946 -19.98999 -19.15549 -18.84489 -16.40161 -16.33238 -15.25467 -14.99198 -14.79193 -14.43874 -13.87237 -13.59698 -13.20034 -13.04755 -13.01065 -12.43418 -12.17467 -12.12485 -12.04504 -11.86031 -11.59124 -11.43168 -11.10385 -10.89435 -10.81722 -10.56964 -10.48085 -10.34898 -9.93985 -9.83822 -9.43183 -8.99655 -8.84465 -8.39485 -7.96011 -7.59091 -5.85796 -4.02089 2.21223 2.79285 3.31192 3.37022 3.41962 3.43876 4.49474 4.55923 4.86088 4.91607 5.05281 5.09683 5.25222 5.36645 5.40540 5.54245 5.60647 5.65089 5.68454 5.83233 5.86152 5.92599 6.04932 6.19931 6.29364 6.40088 6.52585 6.65547 6.75184 6.85373 6.99928 7.03653 7.18127 7.21520 7.39585 7.52796 7.87430 8.16009 8.19823 8.46861 8.75855 9.16529 9.69009 11.15894 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.005186 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.898084 B = 5398.244324 C = 5516.075880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.380 5.380 4 N -0.311 5.311 5 C 0.081 3.919 6 C -0.213 4.213 7 C 0.155 3.845 8 H 0.054 0.946 9 C -0.144 4.144 10 C -0.141 4.141 11 C 0.229 3.771 12 C -0.138 4.138 13 C -0.535 4.535 14 H 0.056 0.944 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 O -0.343 6.343 22 C 0.071 3.929 23 C -0.087 4.087 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.186 0.814 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.034 0.966 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -11.507 3.237 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 N -0.164 5.164 4 N -0.132 5.132 5 C -0.104 4.104 6 C -0.224 4.224 7 C 0.094 3.906 8 H 0.072 0.928 9 C -0.182 4.182 10 C -0.179 4.179 11 C 0.192 3.808 12 C -0.195 4.195 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.123 4.123 16 N -0.495 5.495 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 O -0.263 6.263 22 C -0.055 4.055 23 C -0.146 4.146 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.203 0.797 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.497 -12.477 1.898 16.415 hybrid contribution 0.903 0.923 1.230 1.783 sum -9.595 -11.554 3.128 15.341 Atomic orbital electron populations 1.22179 0.94795 1.02506 1.03190 1.21489 0.94816 0.78856 1.03775 1.48469 1.52848 1.11612 1.03511 1.77312 1.23702 1.04486 1.07676 1.23779 0.96715 0.94966 0.94989 1.20061 1.11817 0.95934 0.94578 1.20765 0.89492 0.88357 0.91945 0.92802 1.23206 0.97921 0.96787 1.00305 1.23223 0.98282 0.95389 1.01034 1.19614 0.91077 0.80141 0.90009 1.21964 0.99852 0.97222 1.00492 1.21252 0.95713 1.41157 0.99164 0.92546 1.24980 0.98467 0.94182 0.94665 1.69945 1.26251 1.44371 1.08945 0.86795 0.82877 0.79644 0.79357 1.20302 1.21306 1.20319 1.88754 1.55720 1.16610 1.65187 1.20617 1.02329 0.92133 0.90402 1.20401 1.03240 1.01278 0.89648 0.91700 0.90959 0.92133 0.89177 0.89530 0.79737 0.91750 0.92265 0.91853 0.92314 0.89269 0.96947 0.94737 0.93114 0.90677 0.91746 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 2 C 0.13 1.40 6.96 -4.04 -0.03 1.37 16 3 N -0.38 -5.89 3.61 -57.14 -0.21 -6.09 16 4 N -0.31 -5.79 12.58 30.62 0.39 -5.41 16 5 C 0.08 1.61 11.52 -17.37 -0.20 1.41 16 6 C -0.21 -4.07 5.25 -105.06 -0.55 -4.62 16 7 C 0.15 3.20 3.64 -26.86 -0.10 3.10 16 8 H 0.05 1.11 7.33 -51.93 -0.38 0.73 16 9 C -0.14 -2.66 6.56 -24.48 -0.16 -2.82 16 10 C -0.14 -2.95 6.08 -24.79 -0.15 -3.10 16 11 C 0.23 5.73 0.82 -91.05 -0.07 5.66 16 12 C -0.14 -3.37 8.51 37.16 0.32 -3.06 16 13 C -0.54 -14.77 8.22 -34.44 -0.28 -15.05 16 14 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 15 C 0.08 2.30 5.26 -17.82 -0.09 2.20 16 16 N -0.86 -24.87 10.93 55.43 0.61 -24.26 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 O -0.34 -8.81 9.46 -35.23 -0.33 -9.14 16 22 C 0.07 1.13 6.93 -82.27 -0.57 0.56 16 23 C -0.09 -1.00 9.90 36.00 0.36 -0.65 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.71 7.05 -51.93 -0.37 0.34 16 29 H 0.19 3.74 8.06 -52.49 -0.42 3.32 16 30 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 33 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 34 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.59 7.08 -51.93 -0.37 0.22 16 40 H 0.09 1.01 7.27 -51.93 -0.38 0.63 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -31.82 324.66 -7.20 -39.02 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.36 Total: 0.76 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.16 Total: -16.11 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.78 Total: -35.76 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.33 Total: -9.14 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.82 -7.20 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703743056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.070 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds