Wall clock time and date at job start Mon Mar 30 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.49167 * 2 1 4 4 C 1.52306 * 115.91369 * 351.86512 * 3 2 1 5 5 C 1.51364 * 60.10366 * 106.18203 * 4 3 2 6 6 H 1.09002 * 115.85348 * 251.98604 * 5 4 3 7 7 C 1.52539 * 117.52738 * 111.33962 * 5 4 3 8 8 C 1.52866 * 110.48630 * 270.70843 * 7 5 4 9 9 C 1.53301 * 108.58168 * 53.46384 * 8 7 5 10 10 C 1.52068 * 114.63600 * 205.61204 * 3 2 1 11 11 C 1.53100 * 109.47571 * 239.97545 * 2 1 3 12 12 C 1.53311 * 109.19441 * 297.62406 * 11 2 1 13 13 C 1.53177 * 108.96735 * 303.05955 * 12 11 2 14 14 C 1.53098 * 109.21356 * 56.95427 * 13 12 11 15 15 H 1.08999 * 109.47859 * 62.34349 * 14 13 12 16 16 C 1.50697 * 109.47706 * 182.36284 * 14 13 12 17 17 H 1.07999 * 120.00348 * 0.02562 * 16 14 13 18 18 C 1.37883 * 119.99752 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99677 * 359.97438 * 18 16 14 20 20 Si 1.86792 * 119.99951 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47566 * 89.99877 * 20 18 16 22 22 H 1.48499 * 109.47296 * 210.00025 * 20 18 16 23 23 H 1.48508 * 109.47447 * 329.99807 * 20 18 16 24 24 O 1.42899 * 109.41440 * 302.35638 * 14 13 12 25 25 H 1.08995 * 109.46974 * 299.96806 * 1 2 3 26 26 H 1.08998 * 109.46867 * 59.96465 * 1 2 3 27 27 H 1.08994 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08996 * 117.53257 * 213.89924 * 4 3 2 29 29 H 1.09000 * 117.53422 * 359.13899 * 4 3 2 30 30 H 1.09004 * 110.04258 * 149.84857 * 7 5 4 31 31 H 1.08996 * 108.32933 * 30.48600 * 7 5 4 32 32 H 1.08998 * 109.62181 * 293.73515 * 8 7 5 33 33 H 1.09000 * 109.77059 * 173.27723 * 8 7 5 34 34 H 1.08997 * 109.62119 * 165.82629 * 9 8 7 35 35 H 1.09003 * 109.76844 * 45.37174 * 9 8 7 36 36 H 1.08997 * 109.27294 * 314.63767 * 10 3 2 37 37 H 1.08999 * 109.26921 * 74.11022 * 10 3 2 38 38 H 1.08992 * 109.52355 * 57.53561 * 11 2 1 39 39 H 1.08999 * 109.51737 * 177.65906 * 11 2 1 40 40 H 1.09001 * 109.62384 * 183.18541 * 12 11 2 41 41 H 1.09002 * 109.52711 * 62.87886 * 12 11 2 42 42 H 1.09002 * 109.52487 * 297.01638 * 13 12 11 43 43 H 1.09004 * 109.52023 * 176.89257 * 13 12 11 44 44 H 0.96997 * 119.99668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 0.9842 2.5223 -0.1938 5 6 1.5983 2.3041 1.1723 6 1 0.9502 1.8406 1.9162 7 6 2.5088 3.3991 1.7190 8 6 3.9550 3.1575 1.2870 9 6 3.9895 2.9992 -0.2375 10 6 3.4271 1.6240 -0.5975 11 6 2.0405 -0.7222 -1.2497 12 6 1.5756 -2.1827 -1.2131 13 6 2.0764 -2.8323 0.0806 14 6 1.5645 -2.0285 1.2789 15 1 0.4749 -2.0551 1.2956 16 6 2.1014 -2.6285 2.5527 17 1 2.7438 -3.4958 2.5124 18 6 1.7726 -2.0702 3.7698 19 7 0.9909 -1.0138 3.8189 20 14 2.4388 -2.8134 5.3488 21 1 3.7365 -2.1758 5.6872 22 1 1.4713 -2.5824 6.4514 23 1 2.6382 -4.2733 5.1632 24 8 2.0066 -0.6743 1.1663 25 1 -0.3633 0.5133 0.8902 26 1 -0.3633 0.5144 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2746 3.4185 -0.7420 29 1 -0.0475 2.1990 -0.3321 30 1 2.4556 3.4202 2.8076 31 1 2.1688 4.3565 1.3242 32 1 4.3308 2.2491 1.7578 33 1 4.5741 4.0051 1.5810 34 1 5.0178 3.0779 -0.5904 35 1 3.3825 3.7760 -0.7026 36 1 4.0903 0.8513 -0.2090 37 1 3.3662 1.5330 -1.6820 38 1 1.6421 -0.2356 -2.1399 39 1 3.1297 -0.6864 -1.2716 40 1 1.9824 -2.7180 -2.0710 41 1 0.4866 -2.2192 -1.2416 42 1 3.1664 -2.8401 0.0861 43 1 1.7045 -3.8550 0.1423 44 1 0.7599 -0.6208 4.6751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709196775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:17 Heat of formation + Delta-G solvation = -58.714571 kcal Electronic energy + Delta-G solvation = -22205.773350 eV Core-core repulsion = 19315.094099 eV Total energy + Delta-G solvation = -2890.679250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61961 -39.22785 -35.23750 -34.38268 -33.91777 -32.47790 -30.99073 -29.21889 -27.27458 -25.54515 -24.38155 -23.69835 -22.26145 -21.56324 -19.95975 -18.80183 -18.58884 -17.45461 -16.59420 -16.32961 -15.69709 -15.41493 -15.28812 -14.95425 -14.70250 -14.53937 -14.39039 -13.88021 -13.56583 -13.13601 -13.13304 -12.94770 -12.81975 -12.74053 -12.52313 -12.42761 -12.29627 -11.99110 -11.82630 -11.72793 -11.52502 -11.45843 -11.36728 -10.90825 -10.78241 -10.57365 -10.47147 -10.07279 -9.50838 -8.10754 -6.29449 1.37678 1.39308 1.48902 2.40523 2.82239 3.16734 3.63479 3.81373 3.86643 4.03895 4.06649 4.14721 4.19888 4.27959 4.38183 4.42216 4.49619 4.53170 4.58785 4.68485 4.74759 4.79844 4.85199 4.87224 4.92103 4.97838 5.04311 5.06710 5.15070 5.17427 5.20037 5.25770 5.33859 5.35224 5.39298 5.45452 5.49528 5.56825 5.58080 5.61618 5.70642 5.85942 6.29271 6.72636 7.36456 7.48702 8.95527 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.008473 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.274292 B = 3303.882789 C = 4140.505784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.099 4.099 4 C -0.157 4.157 5 C -0.144 4.144 6 H 0.059 0.941 7 C -0.081 4.081 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.073 4.073 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.139 4.139 14 C 0.220 3.780 15 H -0.016 1.016 16 C -0.555 4.555 17 H 0.057 0.943 18 C 0.030 3.970 19 N -0.886 5.886 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.280 1.280 23 H -0.264 1.264 24 O -0.370 6.370 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 8.436 -10.942 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 C -0.099 4.099 4 C -0.194 4.194 5 C -0.163 4.163 6 H 0.078 0.922 7 C -0.118 4.118 8 C -0.155 4.155 9 C -0.148 4.148 10 C -0.110 4.110 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.177 4.177 14 C 0.164 3.836 15 H 0.002 0.998 16 C -0.592 4.592 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.523 5.523 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.189 1.189 24 O -0.290 6.290 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.418 8.638 -10.695 13.959 hybrid contribution -0.198 -0.945 1.380 1.684 sum 2.220 7.693 -9.315 12.284 Atomic orbital electron populations 1.22377 0.97414 1.00955 1.00976 1.20971 0.91887 0.90976 0.87219 1.20885 0.96480 0.89913 1.02627 1.23086 0.97676 0.99716 0.98892 1.21591 1.02377 1.00686 0.91645 0.92210 1.20929 0.94523 0.96891 0.99444 1.21527 0.96042 1.00941 0.96958 1.21582 1.01534 0.96591 0.95101 1.20780 0.92537 0.97576 1.00097 1.22137 1.01098 0.95484 0.98013 1.21667 1.00450 0.96151 0.97142 1.22137 1.00035 0.99283 0.96290 1.19442 0.92252 0.79831 0.92076 0.99801 1.21436 1.32713 1.13332 0.91724 0.92473 1.25805 0.94479 0.94806 1.02166 1.70175 1.34985 1.21541 1.25569 0.85677 0.78192 0.79169 0.79281 1.20411 1.20577 1.18867 1.88298 1.72705 1.26498 1.41494 0.94667 0.90103 0.93940 0.86545 0.88652 0.93493 0.90031 0.94690 0.90274 0.90441 0.90330 0.93770 0.90090 0.89698 0.91781 0.90312 0.92413 0.93468 0.92661 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.26 6.49 71.98 0.47 -5.79 16 2 C 0.13 5.18 0.78 -10.76 -0.01 5.17 16 3 C -0.10 -3.40 2.09 -53.02 -0.11 -3.51 16 4 C -0.16 -4.55 8.60 29.83 0.26 -4.29 16 5 C -0.14 -5.27 5.23 -11.79 -0.06 -5.33 16 6 H 0.06 2.77 7.37 -2.39 -0.02 2.76 16 7 C -0.08 -2.46 5.87 30.40 0.18 -2.28 16 8 C -0.12 -3.31 5.94 30.65 0.18 -3.13 16 9 C -0.11 -2.66 5.70 30.66 0.17 -2.49 16 10 C -0.07 -2.14 4.07 30.25 0.12 -2.01 16 11 C -0.13 -4.37 4.16 30.73 0.13 -4.24 16 12 C -0.12 -4.05 5.73 30.76 0.18 -3.87 16 13 C -0.14 -6.08 5.35 30.69 0.16 -5.92 16 14 C 0.22 11.74 2.17 29.88 0.06 11.80 16 15 H -0.02 -0.90 6.34 -2.39 -0.02 -0.92 16 16 C -0.55 -32.54 8.79 25.60 0.23 -32.32 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 18 C 0.03 1.78 5.40 84.66 0.46 2.23 16 19 N -0.89 -53.91 12.84 21.45 0.28 -53.64 16 20 Si 0.95 45.44 29.54 68.60 2.03 47.46 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 24 O -0.37 -19.39 9.15 -148.98 -1.36 -20.75 16 25 H 0.03 1.54 6.79 -2.39 -0.02 1.52 16 26 H 0.08 2.52 6.88 -2.39 -0.02 2.50 16 27 H 0.04 1.76 4.98 -2.39 -0.01 1.75 16 28 H 0.12 2.65 7.28 -2.39 -0.02 2.64 16 29 H 0.10 2.76 5.59 -2.39 -0.01 2.75 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.02 8.06 -2.39 -0.02 2.00 16 32 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.60 7.13 -2.39 -0.02 1.58 16 36 H 0.04 1.53 7.64 -2.39 -0.02 1.51 16 37 H 0.08 1.99 7.78 -2.39 -0.02 1.97 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 2.17 6.66 -2.39 -0.02 2.15 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -66.73 319.43 4.32 -62.42 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.96 Total: 20.50 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 2.42 Total: -55.99 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.28 Total: -53.64 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.36 Total: -20.75 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.73 4.32 -62.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709196775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.702 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds