Wall clock time and date at job start Mon Mar 30 2020 07:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46757 * 2 1 4 4 O 1.42900 * 109.46729 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99711 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46991 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47126 * 65.00315 * 6 5 4 8 8 C 1.39858 * 119.99811 * 180.02562 * 7 6 5 9 9 C 1.39597 * 119.83889 * 359.97438 * 8 7 6 10 10 C 1.38057 * 120.54825 * 179.97438 * 9 8 7 11 11 C 1.38738 * 120.22062 * 0.02562 * 10 9 8 12 12 N 1.38867 * 120.16444 * 179.97438 * 11 10 9 13 13 C 1.41568 * 119.67472 * 0.02562 * 11 10 9 14 14 C 1.41022 * 120.27025 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99839 * 25.84246 * 14 13 11 16 16 C 1.39886 * 120.00172 * 205.84636 * 14 13 11 17 17 N 1.30903 * 119.99916 * 17.10174 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 197.10522 * 16 14 13 19 19 H 1.48504 * 109.47048 * 94.49815 * 18 16 14 20 20 H 1.48493 * 109.47403 * 214.50088 * 18 16 14 21 21 H 1.48506 * 109.47112 * 334.50068 * 18 16 14 22 22 C 1.38003 * 119.83532 * 179.71875 * 8 7 6 23 23 H 1.08999 * 109.47257 * 300.00312 * 1 2 3 24 24 H 1.08998 * 109.47051 * 60.00516 * 1 2 3 25 25 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47488 * 240.00418 * 2 1 3 27 27 H 1.08998 * 109.47051 * 119.99484 * 2 1 3 28 28 H 1.08999 * 109.47492 * 59.99831 * 3 2 1 29 29 H 1.08998 * 109.46919 * 299.99565 * 3 2 1 30 30 H 1.08995 * 109.47256 * 59.99634 * 5 4 3 31 31 H 1.09008 * 109.47275 * 299.99608 * 5 4 3 32 32 H 1.09001 * 109.46862 * 184.99545 * 6 5 4 33 33 H 1.08997 * 109.47439 * 304.99889 * 6 5 4 34 34 H 0.97005 * 120.00179 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.72621 * 359.97438 * 9 8 7 36 36 H 1.07994 * 119.88982 * 180.02562 * 10 9 8 37 37 H 0.96994 * 119.99872 * 359.97438 * 12 11 10 38 38 H 0.97004 * 120.00054 * 180.02562 * 12 11 10 39 39 H 0.96998 * 119.99664 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.11959 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5754 2.6273 -0.0012 7 7 6.0161 2.0063 -1.2527 8 6 7.3783 1.7896 -1.4840 9 6 8.3150 2.1667 -0.5202 10 6 9.6632 1.9591 -0.7330 11 6 10.1020 1.3721 -1.9110 12 7 11.4584 1.1643 -2.1241 13 6 9.1601 0.9870 -2.8953 14 6 9.5922 0.3888 -4.0971 15 1 10.5267 -0.1517 -4.1257 16 6 8.8103 0.4955 -5.2521 17 7 7.8713 1.4047 -5.3251 18 14 9.1060 -0.6594 -6.6902 19 1 8.1861 -1.8208 -6.5897 20 1 8.8555 0.0618 -7.9639 21 1 10.5117 -1.1373 -6.6603 22 6 7.7893 1.1990 -2.6616 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9565 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.7288 3.2893 0.8886 31 1 3.7281 3.2888 -0.8913 32 1 6.0183 3.6193 0.0878 33 1 5.8911 2.0115 0.8409 34 1 5.3631 1.7448 -1.9207 35 1 7.9824 2.6247 0.3996 36 1 10.3787 2.2546 0.0200 37 1 12.1017 1.4301 -1.4486 38 1 11.7625 0.7540 -2.9488 39 1 7.3289 1.4784 -6.1259 40 1 7.0614 0.9052 -3.4034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714975293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:31 Heat of formation + Delta-G solvation = -36.660692 kcal Electronic energy + Delta-G solvation = -19398.246156 eV Core-core repulsion = 16404.982890 eV Total energy + Delta-G solvation = -2993.263266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.35344 -37.68674 -35.31820 -33.74036 -33.39318 -31.86627 -29.37970 -28.96417 -26.25783 -25.43245 -24.62930 -22.35765 -21.57716 -20.73734 -19.60596 -17.11735 -16.68982 -16.22883 -16.09023 -15.40619 -15.04524 -14.79646 -14.53726 -14.31681 -13.64985 -13.25948 -12.95925 -12.51406 -12.39029 -12.15017 -12.09830 -11.78389 -11.63451 -11.31063 -11.10902 -11.05299 -10.99372 -10.93675 -10.85013 -10.32785 -9.83793 -9.67622 -9.57225 -9.25381 -9.00012 -7.69010 -7.16859 -6.57483 -5.46300 -4.01159 2.95113 3.16920 3.19659 3.35994 3.54047 3.66892 4.07452 4.51102 4.82575 4.86474 4.88076 5.12786 5.27687 5.29851 5.36113 5.40104 5.46675 5.51712 5.59363 5.80724 5.91840 5.99501 6.05155 6.11710 6.22769 6.42090 6.68638 7.17683 7.20469 7.26228 7.37126 7.55499 7.76335 7.93952 8.06454 8.18378 8.51658 8.82088 8.96774 9.01084 9.06082 9.31482 9.40120 10.42213 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004626 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.396428 B = 6050.700426 C = 7372.438085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.381 6.381 5 C 0.053 3.947 6 C 0.142 3.858 7 N -0.758 5.758 8 C 0.179 3.821 9 C -0.257 4.257 10 C -0.152 4.152 11 C 0.083 3.917 12 N -0.889 5.889 13 C 0.096 3.904 14 C -0.465 4.465 15 H 0.071 0.929 16 C 0.077 3.923 17 N -0.800 5.800 18 Si 0.901 3.099 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.265 1.265 22 C -0.201 4.201 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.390 0.610 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.005 0.842 7.248 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.300 6.300 5 C -0.024 4.024 6 C 0.016 3.984 7 N -0.393 5.393 8 C 0.081 3.919 9 C -0.281 4.281 10 C -0.176 4.176 11 C -0.018 4.018 12 N -0.432 5.432 13 C 0.091 3.909 14 C -0.497 4.497 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.427 5.427 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.225 4.225 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.150 0.870 7.264 12.511 hybrid contribution -0.006 -0.243 -0.976 1.006 sum -10.156 0.627 6.288 11.961 Atomic orbital electron populations 1.21693 0.95023 1.02095 1.01808 1.21458 0.95380 0.95846 1.03557 1.22513 0.81705 0.97664 0.99714 1.87989 1.18886 1.27789 1.95319 1.22788 0.94475 0.84865 1.00243 1.21013 0.90204 0.97771 0.89379 1.44229 1.04783 1.71258 1.19058 1.17520 0.82155 0.97686 0.94585 1.19594 0.92271 1.16519 0.99701 1.19695 0.94607 1.06980 0.96368 1.17853 0.84094 1.03663 0.96152 1.41801 1.04090 1.74411 1.22899 1.16966 0.90106 0.92437 0.91372 1.19134 1.06037 1.30952 0.93529 0.91094 1.25739 0.94281 0.94238 0.99589 1.69894 1.17491 1.27009 1.28258 0.86434 0.79650 0.81010 0.80272 1.19683 1.20653 1.18924 1.20458 0.95770 1.10037 0.96259 0.92721 0.92597 0.92124 0.90934 0.91192 0.93788 0.93598 0.92731 0.92972 0.92170 0.92796 0.77661 0.89779 0.89817 0.80157 0.78365 0.91520 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.29 6.30 -26.73 -0.17 -1.46 16 3 C 0.06 0.68 5.94 37.16 0.22 0.91 16 4 O -0.38 -5.60 10.29 -35.23 -0.36 -5.96 16 5 C 0.05 0.71 6.07 37.16 0.23 0.93 16 6 C 0.14 2.33 5.29 -4.04 -0.02 2.31 16 7 N -0.76 -15.44 5.68 -58.64 -0.33 -15.77 16 8 C 0.18 4.35 6.64 -83.77 -0.56 3.79 16 9 C -0.26 -6.03 9.31 -39.14 -0.36 -6.40 16 10 C -0.15 -3.60 9.86 -39.46 -0.39 -3.98 16 11 C 0.08 2.07 6.79 -83.22 -0.56 1.51 16 12 N -0.89 -18.72 8.98 32.75 0.29 -18.43 16 13 C 0.10 2.63 5.57 -106.65 -0.59 2.03 16 14 C -0.47 -12.50 8.48 -37.91 -0.32 -12.82 16 15 H 0.07 1.81 6.70 -52.49 -0.35 1.46 16 16 C 0.08 2.00 5.14 -17.33 -0.09 1.91 16 17 N -0.80 -21.35 11.03 55.55 0.61 -20.74 16 18 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.20 -5.39 8.50 -38.75 -0.33 -5.72 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 33 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.39 7.83 8.48 -40.82 -0.35 7.49 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.37 6.66 8.83 -40.82 -0.36 6.30 16 38 H 0.39 8.02 7.05 -40.82 -0.29 7.73 16 39 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.12 3.22 6.25 -52.49 -0.33 2.89 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -29.66 330.21 -8.64 -38.30 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -6.21 Total: 21.14 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.58 Total: -17.81 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.57 Total: -54.93 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.36 Total: -5.96 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.66 -8.64 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714975293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.636 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds