Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 C 1.53009 * 109.46905 * 240.00227 * 2 1 3 5 5 C 1.50700 * 109.47083 * 120.00467 * 2 1 3 6 6 C 1.34334 * 126.16615 * 74.99888 * 5 2 1 7 7 O 1.34756 * 107.11118 * 180.25962 * 6 5 2 8 8 C 1.33969 * 107.75627 * 359.57910 * 7 6 5 9 9 C 1.50702 * 125.62176 * 180.13591 * 8 7 6 10 10 N 1.46491 * 109.47046 * 270.33784 * 9 8 7 11 11 C 1.36936 * 120.00087 * 90.00312 * 10 9 8 12 12 H 1.07999 * 120.00225 * 217.81172 * 11 10 9 13 13 C 1.38813 * 120.00383 * 37.80876 * 11 10 9 14 14 N 1.31620 * 119.99688 * 20.70062 * 13 11 10 15 15 Si 1.86797 * 120.00590 * 200.69843 * 13 11 10 16 16 H 1.48506 * 109.46827 * 59.99713 * 15 13 11 17 17 H 1.48497 * 109.47308 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46883 * 300.00252 * 15 13 11 19 19 C 1.46497 * 120.00136 * 269.99523 * 10 9 8 20 20 C 1.53002 * 117.50319 * 194.24600 * 19 10 9 21 21 C 1.53000 * 117.50020 * 125.58637 * 19 10 9 22 22 N 1.30256 * 108.76024 * 0.42583 * 8 7 6 23 23 H 1.08996 * 109.46779 * 299.99419 * 1 2 3 24 24 H 1.09003 * 109.47051 * 59.99918 * 1 2 3 25 25 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47505 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47623 * 300.00114 * 3 2 1 28 28 H 1.08997 * 109.47170 * 60.00212 * 3 2 1 29 29 H 1.09000 * 109.47245 * 299.99506 * 4 2 1 30 30 H 1.08998 * 109.47072 * 60.00398 * 4 2 1 31 31 H 1.09000 * 109.46966 * 180.02562 * 4 2 1 32 32 H 1.07994 * 126.44274 * 0.02562 * 6 5 2 33 33 H 1.09004 * 109.46685 * 30.34142 * 9 8 7 34 34 H 1.09001 * 109.46710 * 150.33455 * 9 8 7 35 35 H 0.96998 * 120.00218 * 174.92843 * 14 13 11 36 36 H 1.09004 * 115.55137 * 339.91741 * 19 10 9 37 37 H 1.09004 * 117.49277 * 359.97438 * 20 19 10 38 38 H 1.08993 * 117.50277 * 145.01852 * 20 19 10 39 39 H 1.09004 * 117.50155 * 214.98461 * 21 19 10 40 40 H 1.09002 * 117.49952 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 2.0319 -2.0382 1.4348 7 8 2.5585 -2.2514 2.6568 8 6 2.8806 -1.0593 3.1765 9 6 3.5026 -0.8311 4.5300 10 7 2.4462 -0.6703 5.5321 11 6 1.9588 -1.7650 6.1948 12 1 0.9059 -1.8319 6.4258 13 6 2.8179 -2.7888 6.5698 14 7 4.1102 -2.5598 6.6704 15 14 2.1403 -4.4914 6.9319 16 1 1.4583 -5.0200 5.7232 17 1 3.2547 -5.3982 7.3073 18 1 1.1690 -4.4096 8.0524 19 6 1.9113 0.6616 5.8252 20 6 1.0666 0.8209 7.0910 21 6 0.3976 0.8551 5.7146 22 7 2.5619 -0.1297 2.3216 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7217 -1.2491 32 1 1.6732 -2.7926 0.7503 33 1 4.1254 -1.6863 4.7925 34 1 4.1159 0.0696 4.5008 35 1 4.7012 -3.2533 7.0029 36 1 2.5479 1.4980 5.5366 37 1 0.9086 -0.0655 7.7054 38 1 1.1473 1.7620 7.6348 39 1 0.0384 1.8188 5.3535 40 1 -0.2002 -0.0086 5.4233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724355294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 55.058658 kcal Electronic energy + Delta-G solvation = -20710.455833 eV Core-core repulsion = 17721.169816 eV Total energy + Delta-G solvation = -2989.286017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.48314 -37.16981 -36.94559 -33.78400 -33.20315 -31.11259 -28.98523 -27.28536 -27.15122 -25.81875 -23.81477 -22.42388 -21.36570 -20.51512 -19.94191 -18.77448 -16.81670 -16.25005 -15.66238 -15.45947 -14.67686 -14.43077 -14.08542 -13.92577 -13.85216 -13.32430 -12.97777 -12.76605 -12.29137 -12.01378 -11.89015 -11.56261 -11.24956 -10.98293 -10.96533 -10.88414 -10.87339 -10.75194 -10.60614 -10.45702 -10.17538 -10.11862 -9.72633 -9.68390 -9.34096 -8.57185 -8.00233 -6.69046 -6.00959 -3.56530 2.26189 3.28950 3.35690 3.39000 3.42877 3.68595 4.34015 4.58239 4.90786 4.94268 5.11407 5.15625 5.23124 5.34875 5.54809 5.59005 5.63883 5.79745 5.83078 5.90999 5.96303 6.03925 6.09468 6.10772 6.16718 6.19336 6.41321 6.42739 6.49439 6.52225 6.60244 6.64019 6.79254 6.96393 7.07060 7.16025 7.29408 7.70172 8.32733 8.65692 8.95948 9.58384 10.14027 11.02615 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.006613 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.159816 B = 4232.926703 C = 4937.711979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.006 4.006 6 C -0.110 4.110 7 O -0.195 6.195 8 C 0.214 3.786 9 C 0.226 3.774 10 N -0.532 5.532 11 C -0.270 4.270 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.279 1.279 19 C 0.129 3.871 20 C -0.192 4.192 21 C -0.222 4.222 22 N -0.500 5.500 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.195 0.805 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 3.986 -11.189 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 C -0.184 4.184 4 C -0.196 4.196 5 C -0.126 4.126 6 C -0.181 4.181 7 O -0.080 6.080 8 C 0.004 3.996 9 C 0.097 3.903 10 N -0.248 5.248 11 C -0.399 4.399 12 H 0.082 0.918 13 C -0.178 4.178 14 N -0.526 5.526 15 Si 0.732 3.268 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.205 1.205 19 C 0.020 3.980 20 C -0.230 4.230 21 C -0.262 4.262 22 N -0.229 5.229 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.212 0.788 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.056 4.429 -11.016 12.259 hybrid contribution -0.741 -1.745 -0.041 1.896 sum -3.797 2.684 -11.056 11.994 Atomic orbital electron populations 1.21866 0.93885 1.01788 1.01812 1.18823 0.94941 0.95253 0.89593 1.21661 1.01176 0.94231 1.01301 1.21898 1.01333 0.99982 0.96339 1.21454 1.03723 0.91079 0.96373 1.24399 1.07742 0.98287 0.87700 1.84573 1.60014 1.36674 1.26747 1.29106 0.96239 0.76175 0.98052 1.19770 0.90287 1.03836 0.76421 1.43282 1.42596 1.01340 1.37566 1.18914 0.92290 0.95657 1.33045 0.91799 1.25233 0.95425 0.99754 0.97427 1.69826 1.03173 1.33678 1.45876 0.86348 0.78240 0.83661 0.78502 1.20544 1.21256 1.20452 1.21141 0.89634 0.88613 0.98575 1.23104 1.06772 1.01817 0.91349 1.23293 1.00542 1.00870 1.01505 1.70350 1.17612 1.33345 1.01640 0.92317 0.92406 0.92791 0.92647 0.93309 0.91807 0.92715 0.92227 0.92462 0.78825 0.86081 0.90626 0.92757 0.88873 0.88215 0.90559 0.90804 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.46 37.16 0.31 -1.40 16 2 C 0.01 0.20 0.95 -155.66 -0.15 0.05 16 3 C -0.13 -1.71 8.05 37.15 0.30 -1.41 16 4 C -0.14 -1.55 8.19 37.16 0.30 -1.25 16 5 C -0.01 -0.11 5.53 -82.81 -0.46 -0.57 16 6 C -0.11 -1.99 11.45 29.35 0.34 -1.65 16 7 O -0.19 -4.35 10.78 5.35 0.06 -4.29 16 8 C 0.21 4.81 7.93 -12.95 -0.10 4.71 16 9 C 0.23 5.30 5.96 -5.20 -0.03 5.26 16 10 N -0.53 -13.07 2.77 -167.03 -0.46 -13.53 16 11 C -0.27 -7.16 8.04 -15.06 -0.12 -7.28 16 12 H 0.06 1.73 7.21 -52.49 -0.38 1.35 16 13 C 0.02 0.62 4.97 -17.43 -0.09 0.53 16 14 N -0.88 -24.15 11.44 55.49 0.63 -23.51 16 15 Si 0.90 21.22 29.60 -169.99 -5.03 16.19 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.13 2.81 6.61 -67.93 -0.45 2.36 16 20 C -0.19 -3.86 9.81 -26.69 -0.26 -4.12 16 21 C -0.22 -4.45 10.08 -26.69 -0.27 -4.72 16 22 N -0.50 -10.44 10.67 -7.35 -0.08 -10.52 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 29 H 0.05 0.57 7.51 -51.93 -0.39 0.18 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.19 2.72 7.66 -52.49 -0.40 2.32 16 33 H 0.12 3.11 5.51 -51.93 -0.29 2.82 16 34 H 0.08 1.64 8.04 -51.93 -0.42 1.23 16 35 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 36 H 0.09 1.89 8.10 -51.93 -0.42 1.47 16 37 H 0.10 2.20 6.96 -51.93 -0.36 1.83 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.79 7.99 -51.93 -0.41 1.37 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -28.61 331.25 -6.99 -35.60 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.43 Total: 4.55 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.67 Total: -9.47 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.09 Total: -47.57 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.06 Total: -4.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.61 -6.99 -35.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724355294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.659 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds